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F1000Research
Volumn 6, Issue , 2017, Pages
Picopore: A tool for reducing the storage size of Oxford Nanopore Technologies datasets without loss of functionality
Author keywords

Compression; Data Storage; DNA Sequencing; Genome Informatics; Nanopore Sequencing
Indexed keywords

ARTICLE; CLIENT SERVER APPLICATION; COMPUTER ANALYSIS; COMPUTER INTERFACE; INFORMATION PROCESSING; MINION; NANOTECHNOLOGY; NEXT GENERATION SEQUENCING; PICOPORE; PROMETHION; SOFTWARE;
EID: 85017116853     PISSN: 20461402     EISSN: 1759796X     Source Type: Journal    
DOI: 10.12688/f1000research.11022.1     Document Type: Article
Times cited : (8)
References (11)
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  • 2
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  • 3
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    • MinION Analysis and Reference Consortium: Phase 1 data release and analysis
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    • Ip, C.L.1    Loose, M.2    Tyson, J.R.3
  • 4
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    • Whole genome sequencing and assembly of a Caenorhabditis elegans genome with complex genomic rearrangements using the MinION sequencing device
    • Tyson JR O'Neil NJ Jain M: Whole genome sequencing and assembly of a Caenorhabditis elegans genome with complex genomic rearrangements using the MinION sequencing device. bioRxiv. 2017. 10.1101/099143
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    • Tyson, J.R.1    O'Neil, N.J.2    Jain, M.3
  • 5
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    • The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
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    • Jain M Olsen HE Paten B: The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community. Genome Biol. 2016;17(1):239. 27887629 10.1186/s13059-016-1103-0 5124260
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    • Jain, M.1    Olsen, H.E.2    Paten, B.3
  • 6
    • 79952595565 scopus 로고    scopus 로고
    • The numpy array:a structure for efficient numerical computation
    • van der Walt S Colbert SC Varoquaux G: The numpy array: a structure for efficient numerical computation. Comput Sci Eng. 2011;13(2):22-30. 10.1109/MCSE.2011.37
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    • van der Walt, S.1    Colbert, S.C.2    Varoquaux, G.3
  • 7
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    • A complete bacterial genome assembled de novo using only nanopore sequencing data
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    • Loman NJ Quick J Simpson JT: A complete bacterial genome assembled de novo using only nanopore sequencing data. Nat Methods. 2015;12(8):733-735. 26076426 10.1038/nmeth.3444
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    • Loman, N.J.1    Quick, J.2    Simpson, J.T.3
  • 8
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    • De novo identification of DNA modifications enabled by genome-guided nanopore signal processing
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    • scottgigante/picopore: 1.0.0 Stable [Data set]
    • Data Source
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    • Dataset 1 in: Picopore: A tool for reducing the storage size of Oxford Nanopore Technologies datasets without loss of functionality
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  • 11
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    • Toy datasets for compression by Picopore [Data set]
    • Data Source
    • Lucattini A Kinery A: Toy datasets for compression by Picopore [Data set]. Zenodo .2017. Data Source
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    • Lucattini, A.1    Kinery, A.2

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.