메뉴 건너뛰기




Volumn 13, Issue 3, 2017, Pages

Visualizing the structure of RNA-seq expression data using grade of membership models

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL EXPERIMENT; BIOLOGY; CELL MATURATION; CLUSTER ANALYSIS; GENE EXPRESSION; GERM CELL; INNER CELL MASS; MODEL; MORULA; NONHUMAN; PREIMPLANTATION EMBRYO; TROPHOBLAST; ALGORITHM; ANIMAL; BLASTOCYST; BRAIN; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; HUMAN; METABOLISM; MOUSE; PROCEDURES; REPRODUCIBILITY; SEQUENCE ANALYSIS;

EID: 85016564624     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1006599     Document Type: Article
Times cited : (107)

References (59)
  • 2
    • 0033569406 scopus 로고    scopus 로고
    • Molecular classification of cancer: class discovery and class prediction by gene expression monitoring
    • Oct, 10521349
    • Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP, et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science. 1999Oct;286(5439):531–7. doi: 10.1126/science.286.5439.531 10521349
    • (1999) Science , vol.286 , Issue.5439 , pp. 531-537
    • Golub, T.R.1    Slonim, D.K.2    Tamayo, P.3    Huard, C.4    Gaasenbeek, M.5    Mesirov, J.P.6
  • 3
    • 0034598746 scopus 로고    scopus 로고
    • Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
    • 10676951
    • Alizadeh AA, Eisen MB, Davis RE, Ma C, Lossos IS, Rosenwald A, Boldrick JC, et al. Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature. 2000;403(6769):503–11. doi: 10.1038/35000501 10676951
    • (2000) Nature , vol.403 , Issue.6769 , pp. 503-511
    • Alizadeh, A.A.1    Eisen, M.B.2    Davis, R.E.3    Ma, C.4    Lossos, I.S.5    Rosenwald, A.6    Boldrick, J.C.7
  • 4
    • 28644449917 scopus 로고    scopus 로고
    • How does gene expression clustering work?
    • 16333293
    • D’haeseleer P, How does gene expression clustering work?Nature Biotechnology. 2005;23(12):1499–501. doi: 10.1038/nbt1205-1499 16333293
    • (2005) Nature Biotechnology , vol.23 , Issue.12 , pp. 1499-1501
    • D’haeseleer, P.1
  • 6
    • 60849129589 scopus 로고    scopus 로고
    • Erosheva EA.Seattle (WA): Department of Statistics, University of Washington. 2006;Technical report No.:492
    • Erosheva EA. Latent class representation of the grade of membership model. Seattle (WA): Department of Statistics, University of Washington. 2006;Technical report No.:492.
    • (2006) Latent class representation of the grade of membership model.
  • 7
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • June, 10835412
    • Pritchard JK, Stephens M, Donnelly P, Inference of population structure using multilocus genotype data. Genetics. 2000June;155(2):945–59. 10835412
    • (2000) Genetics , vol.155 , Issue.2 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 10
    • 84953204417 scopus 로고    scopus 로고
    • A simple model-based approach to inferring and visualizing cancer mutation signatures
    • Dec, 26630308
    • Shiraishi Y, Tremmel G, Miyano S, Stephens M, A simple model-based approach to inferring and visualizing cancer mutation signatures. PLoS Genetics. 2015Dec;11(12):e1005657. doi: 10.1371/journal.pgen.1005657 26630308
    • (2015) PLoS Genetics , vol.11 , Issue.12 , pp. e1005657
    • Shiraishi, Y.1    Tremmel, G.2    Miyano, S.3    Stephens, M.4
  • 11
    • 85016574932 scopus 로고    scopus 로고
    • Lindsay J, Mandoiu I, Nelson C. Gene expression deconvolution using single-cells
    • Lindsay J, Mandoiu I, Nelson C. Gene expression deconvolution using single-cells. Proceedings of the 2013 American Association of Human Genetics meeting. 2013. http://dna.engr.uconn.edu/bibtexmngr/upload/Lal.13.pdf.
    • (2013) Proceedings of the 2013 American Association of Human Genetics meeting.
  • 12
    • 84880530294 scopus 로고    scopus 로고
    • DeMix: deconvolution for mixed cancer transcriptomes using raw measured data
    • Aug, 23712657
    • Ahn J, Yuan Y, Parmigiani G, Suraokar MB, Diao L, Wistuba II, et al. DeMix: deconvolution for mixed cancer transcriptomes using raw measured data. Bioinformatics. 2013Aug;29(15):1865–71. doi: 10.1093/bioinformatics/btt301 23712657
    • (2013) Bioinformatics , vol.29 , Issue.15 , pp. 1865-1871
    • Ahn, J.1    Yuan, Y.2    Parmigiani, G.3    Suraokar, M.B.4    Diao, L.5    Wistuba, I.I.6
  • 13
    • 84875282688 scopus 로고    scopus 로고
    • Computational purification of individual tumor gene expression profiles leads to significant improvements in prognostic prediction
    • Mar, 23537167
    • Quon G, Haider S, Deshwar AG, Cui A, Boutros PC, Morris Q, Computational purification of individual tumor gene expression profiles leads to significant improvements in prognostic prediction. Genome Medicine. 2013Mar;5(3):29. doi: 10.1186/gm433 23537167
    • (2013) Genome Medicine , vol.5 , Issue.3 , pp. 29
    • Quon, G.1    Haider, S.2    Deshwar, A.G.3    Cui, A.4    Boutros, P.C.5    Morris, Q.6
  • 14
    • 77249157887 scopus 로고    scopus 로고
    • Biomarker discovery in heterogeneous tissue samples—taking the in-silico deconfounding approach
    • Jan, 20070912
    • Repsilber D, Kern S, Telaar A, Walzl G, Black GF, Selbig J, et al. Biomarker discovery in heterogeneous tissue samples—taking the in-silico deconfounding approach. BMC Bioinformatics. 2010Jan;11:27. doi: 10.1186/1471-2105-11-27 20070912
    • (2010) BMC Bioinformatics , vol.11 , pp. 27
    • Repsilber, D.1    Kern, S.2    Telaar, A.3    Walzl, G.4    Black, G.F.5    Selbig, J.6
  • 15
    • 76949086352 scopus 로고    scopus 로고
    • Applying unmixing to gene expression data for tumor phylogeny inference
    • Jan, 20089185
    • Schwartz R, Shackney SE, Applying unmixing to gene expression data for tumor phylogeny inference. BMC Bioinformatics. 2010Jan;11(1):42. doi: 10.1186/1471-2105-11-42 20089185
    • (2010) BMC Bioinformatics , vol.11 , Issue.1 , pp. 42
    • Schwartz, R.1    Shackney, S.E.2
  • 16
    • 84922353869 scopus 로고    scopus 로고
    • UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples
    • Jan, 25212756
    • Wang N, Gong T, Clarke R, Chen L, Shih IeM, Zhang Z, et al. UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples. Bioinformatics. 2015Jan;31(1):137–9. doi: 10.1093/bioinformatics/btu607 25212756
    • (2015) Bioinformatics , vol.31 , Issue.1 , pp. 137-139
    • Wang, N.1    Gong, T.2    Clarke, R.3    Chen, L.4    Shih, I.M.5    Zhang, Z.6
  • 17
    • 77951634577 scopus 로고    scopus 로고
    • Cell type-specific gene expression differences in complex tissues
    • Apr, 20208531
    • Shen-Orr SS, Tibshirani R, Khatri P, Bodian DL, Staedtler F, Perry NM, et al. Cell type-specific gene expression differences in complex tissues. Nature Methods. 2010Apr;7(4):287–9. doi: 10.1038/nmeth.1439 20208531
    • (2010) Nature Methods , vol.7 , Issue.4 , pp. 287-289
    • Shen-Orr, S.S.1    Tibshirani, R.2    Khatri, P.3    Bodian, D.L.4    Staedtler, F.5    Perry, N.M.6
  • 18
    • 84872023313 scopus 로고    scopus 로고
    • PERT: A method for expression deconvolution of human blood samples from varied microenvironmental and developmental conditions
    • 23284283
    • Qiao W, Quon G, Csaszar E, Yu M, Morris Q, Zandstra PW, PERT: A method for expression deconvolution of human blood samples from varied microenvironmental and developmental conditions. PLoS Computational Biology. 2012;8(12):e1002838. doi: 10.1371/journal.pcbi.1002838 23284283
    • (2012) PLoS Computational Biology , vol.8 , Issue.12 , pp. e1002838
    • Qiao, W.1    Quon, G.2    Csaszar, E.3    Yu, M.4    Morris, Q.5    Zandstra, P.W.6
  • 19
    • 78650539308 scopus 로고    scopus 로고
    • From RNA-seq reads to differential expression results
    • 21176179
    • Oshlack A, Robinson MD, Young MD, From RNA-seq reads to differential expression results. Genome Biology. 2010;11(12):220. doi: 10.1186/gb-2010-11-12-220 21176179
    • (2010) Genome Biology , vol.11 , Issue.12 , pp. 220
    • Oshlack, A.1    Robinson, M.D.2    Young, M.D.3
  • 22
    • 85016648806 scopus 로고    scopus 로고
    • Dey K, Hsiao CJ, Stephens M. CountClust: Clustering and visualizing RNA-Seq expression data using grade of membership models. Version 1.0.2 [R/Bioconductor package]. Available from:
    • Dey K, Hsiao CJ, Stephens M. CountClust: Clustering and visualizing RNA-Seq expression data using grade of membership models. Version 1.0.2 [R/Bioconductor package]. Available from: https://www.bioconductor.org/packages/3.3/bioc/html/CountClust.html
  • 23
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: open software development for computational biology and bioinformatics
    • Sep, 15461798
    • Gentleman R, Carey VJ, Bates DB, Bolstad B, Dettling M, Dudoit S, et al. Bioconductor: open software development for computational biology and bioinformatics. Genome Biology. 2004Sep;5:R80. doi: 10.1186/gb-2004-5-10-r80 15461798
    • (2004) Genome Biology , vol.5 , pp. R80
    • Gentleman, R.1    Carey, V.J.2    Bates, D.B.3    Bolstad, B.4    Dettling, M.5    Dudoit, S.6
  • 25
  • 26
    • 84940969958 scopus 로고    scopus 로고
    • A reanalysis of mouse ENCODE comparative gene expression data
    • 26236466,. Version 1
    • Gilad Y, Mizrahi-Man O, A reanalysis of mouse ENCODE comparative gene expression data. Version 1. F1000Research. 2015;4:121. doi: 10.12688/f1000research.6536.1 26236466
    • (2015) F1000Research , vol.4 , pp. 121
    • Gilad, Y.1    Mizrahi-Man, O.2
  • 27
    • 84960371162 scopus 로고    scopus 로고
    • Differential effects of myelin basic protein-activated Th1 and Th2 cells on the local immune microenvironment of injured spinal cord
    • Mar, 26772636
    • Hu JG, Shi LL, Chen YJ, Xie XM, Zhang N, Zhu AY, et al. Differential effects of myelin basic protein-activated Th1 and Th2 cells on the local immune microenvironment of injured spinal cord. Experimental Neurology. 2016Mar;277:190–201. doi: 10.1016/j.expneurol.2016.01.002 26772636
    • (2016) Experimental Neurology , vol.277 , pp. 190-201
    • Hu, J.G.1    Shi, L.L.2    Chen, Y.J.3    Xie, X.M.4    Zhang, N.5    Zhu, A.Y.6
  • 29
    • 0030989488 scopus 로고    scopus 로고
    • ENC-1: a novel mammalian kelch-related gene specifically expressed in the nervous system encodes an actin-binding protein
    • May, 9096139
    • Hernandez MC, Andres-Barquin PJ, Martinez S, Bulfone A, Rubenstein JL, Israel MA, ENC-1: a novel mammalian kelch-related gene specifically expressed in the nervous system encodes an actin-binding protein. Journal of Neuroscience. 1997May;17(9):3038–51. 9096139
    • (1997) Journal of Neuroscience , vol.17 , Issue.9 , pp. 3038-3051
    • Hernandez, M.C.1    Andres-Barquin, P.J.2    Martinez, S.3    Bulfone, A.4    Rubenstein, J.L.5    Israel, M.A.6
  • 30
    • 67349146589 scopus 로고    scopus 로고
    • mRNA-Seq whole-transcriptome analysis of a single cell
    • May, 19349980
    • Tang F, Barbacioru C, Wang Y, Nordman E, Lee C, Xu N, et al. mRNA-Seq whole-transcriptome analysis of a single cell. Nature Methods. 2009May;6(5):377–82. doi: 10.1038/nmeth.1315 19349980
    • (2009) Nature Methods , vol.6 , Issue.5 , pp. 377-382
    • Tang, F.1    Barbacioru, C.2    Wang, Y.3    Nordman, E.4    Lee, C.5    Xu, N.6
  • 31
    • 84942940566 scopus 로고    scopus 로고
    • Defining cell types and states with single-cell genomics
    • 26430159
    • Trapnell C, Defining cell types and states with single-cell genomics. Genome Research. 2015;25:1491–8. doi: 10.1101/gr.190595.115 26430159
    • (2015) Genome Research , vol.25 , pp. 1491-1498
    • Trapnell, C.1
  • 32
    • 84893905629 scopus 로고    scopus 로고
    • Massively parallel single-cell RNA-Seq for marker-free decomposition of tissues into cell types
    • Feb, 24531970
    • Jaitin DA, Kenigsberg E, Keren-Shaul H, Elefant N, Paul F, Zaretsky I, et al. Massively parallel single-cell RNA-Seq for marker-free decomposition of tissues into cell types. Science. 2014Feb;343(6172):776–9. doi: 10.1126/science.1247651 24531970
    • (2014) Science , vol.343 , Issue.6172 , pp. 776-779
    • Jaitin, D.A.1    Kenigsberg, E.2    Keren-Shaul, H.3    Elefant, N.4    Paul, F.5    Zaretsky, I.6
  • 33
    • 84892179132 scopus 로고    scopus 로고
    • Single-cell RNA-Seq reveals dynamic, random monoallelic gene expression in mammalian cells
    • Jan, 24408435
    • Deng Q, Ramskold D, Reinius B, Sandberg R, Single-cell RNA-Seq reveals dynamic, random monoallelic gene expression in mammalian cells. Science. 2014Jan;343(6167):193–6. doi: 10.1126/science.1245316 24408435
    • (2014) Science , vol.343 , Issue.6167 , pp. 193-196
    • Deng, Q.1    Ramskold, D.2    Reinius, B.3    Sandberg, R.4
  • 34
    • 77956873627 scopus 로고    scopus 로고
    • Tackling the widespread and critical impact of batch effects in high-throughput data
    • Oct, 20838408
    • Leek JT, Scharpf RB, Bravo HC, Simcha D, Langmead B, Johnson WE, et al. Tackling the widespread and critical impact of batch effects in high-throughput data. Nature Reviews Genetics. 2010Oct;11(10):733–9. doi: 10.1038/nrg2825 20838408
    • (2010) Nature Reviews Genetics , vol.11 , Issue.10 , pp. 733-739
    • Leek, J.T.1    Scharpf, R.B.2    Bravo, H.C.3    Simcha, D.4    Langmead, B.5    Johnson, W.E.6
  • 35
    • 84941241201 scopus 로고    scopus 로고
    • Assessing the consistency of public human tissue RNA-seq data sets
    • Nov
    • Danielsson F, James T, Gomez-Cabrero D, Huss M, Assessing the consistency of public human tissue RNA-seq data sets. Briefings in Bioinformatics. 2015Nov;15(6):941–9. doi: 10.1093/bib/bbv017
    • (2015) Briefings in Bioinformatics , vol.15 , Issue.6 , pp. 941-949
    • Danielsson, F.1    James, T.2    Gomez-Cabrero, D.3    Huss, M.4
  • 36
    • 85016641525 scopus 로고    scopus 로고
    • Hicks SC, Teng M, Irizarry RA. On the widespread and critical impact of systematic bias and batch effects in single-cell RNA-Seq data. bioRXiv. 2015
    • Hicks SC, Teng M, Irizarry RA. On the widespread and critical impact of systematic bias and batch effects in single-cell RNA-Seq data. bioRXiv. 2015. https://doi.org/10.1101/025528
  • 37
    • 34848914038 scopus 로고    scopus 로고
    • Capturing heterogeneity in gene expression studies by surrogate variable analysis
    • Sep, 17907809
    • Leek JT, Storey JD, Capturing heterogeneity in gene expression studies by surrogate variable analysis. PLoS Genetics. 2007Sep;3(9):1724–35. doi: 10.1371/journal.pgen.0030161 17907809
    • (2007) PLoS Genetics , vol.3 , Issue.9 , pp. 1724-1735
    • Leek, J.T.1    Storey, J.D.2
  • 38
    • 84861734626 scopus 로고    scopus 로고
    • Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses
    • Feb, 22343431
    • Stegle O, Parts L, Piipari M, Winn J, Durbin R, Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses. Nature Protocols. 2012Feb;7(3):500–7. doi: 10.1038/nprot.2011.457 22343431
    • (2012) Nature Protocols , vol.7 , Issue.3 , pp. 500-507
    • Stegle, O.1    Parts, L.2    Piipari, M.3    Winn, J.4    Durbin, R.5
  • 39
    • 69849115375 scopus 로고    scopus 로고
    • Role of Bcl2-like 10 (Bcl2l10) in regulating mouse oocyte maturation
    • Sep, 19439730
    • Yoon SJ, Kim EY, Kim YS, Lee HS, Kim KH, Bae J, et al. Role of Bcl2-like 10 (Bcl2l10) in regulating mouse oocyte maturation. Biology of Reproduction. 2009Sep;81(3):497–506. doi: 10.1095/biolreprod.108.073759 19439730
    • (2009) Biology of Reproduction , vol.81 , Issue.3 , pp. 497-506
    • Yoon, S.J.1    Kim, E.Y.2    Kim, Y.S.3    Lee, H.S.4    Kim, K.H.5    Bae, J.6
  • 40
    • 67650832144 scopus 로고    scopus 로고
    • Gene expression during the oocyte-to-embryo transition in mammals
    • Sep, 19363788
    • Evsikov AV, De Evsikova C, Gene expression during the oocyte-to-embryo transition in mammals. Molecular Reproduction and Development. 2009Sep;76(9):805–18. doi: 10.1002/mrd.21038 19363788
    • (2009) Molecular Reproduction and Development , vol.76 , Issue.9 , pp. 805-818
    • Evsikov, A.V.1    De Evsikova, C.2
  • 41
    • 34347263069 scopus 로고    scopus 로고
    • Zscan4: a novel gene expressed exclusively in late 2-cell embryos and embryonic stem cells
    • Jul, 17553482
    • Falco G, Lee SL, Stanghellini I, Bassey UC, Hamatani T, Ko MS, Zscan4: a novel gene expressed exclusively in late 2-cell embryos and embryonic stem cells. Developmental Biology. 2007Jul;307(2):539–50. doi: 10.1016/j.ydbio.2007.05.003 17553482
    • (2007) Developmental Biology , vol.307 , Issue.2 , pp. 539-550
    • Falco, G.1    Lee, S.L.2    Stanghellini, I.3    Bassey, U.C.4    Hamatani, T.5    Ko, M.S.6
  • 42
    • 73349095689 scopus 로고    scopus 로고
    • Smarcc1/Baf155 couples self-renewal gene repression with changes in chromatic structure in mouse embroynic stem cells
    • Dec, 19785031
    • Schaniel C, Ang YS, Ratnakumar K, Cormier C, James T, Bernstein E, et al. Smarcc1/Baf155 couples self-renewal gene repression with changes in chromatic structure in mouse embroynic stem cells. Stem Cells. 2009Dec;27(12):2979–91. 19785031
    • (2009) Stem Cells , vol.27 , Issue.12 , pp. 2979-2991
    • Schaniel, C.1    Ang, Y.S.2    Ratnakumar, K.3    Cormier, C.4    James, T.5    Bernstein, E.6
  • 43
    • 0036744787 scopus 로고    scopus 로고
    • Unstable Kinetochore-Microtubule capture and chromosomal instability following deletion of CENP-E
    • Sep, 12361599
    • Putkey FR, Cramer T, Morphew MK, Silk AD, Johnson RS, Mclntosh JR, et al. Unstable Kinetochore-Microtubule capture and chromosomal instability following deletion of CENP-E. Developmental Cell. 2002Sep;3(3):351–65. doi: 10.1016/S1534-5807(02)00255-1 12361599
    • (2002) Developmental Cell , vol.3 , Issue.3 , pp. 351-365
    • Putkey, F.R.1    Cramer, T.2    Morphew, M.K.3    Silk, A.D.4    Johnson, R.S.5    Mclntosh, J.R.6
  • 44
    • 77951912210 scopus 로고    scopus 로고
    • Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst
    • Apr, 20412781
    • Guo G, Huss M, Tong GQ, Wang C, Li Sun L, Clarke ND, et al. Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst. Developmental Cell. 2010Apr;18(4):675–85. doi: 10.1016/j.devcel.2010.02.012 20412781
    • (2010) Developmental Cell , vol.18 , Issue.4 , pp. 675-685
    • Guo, G.1    Huss, M.2    Tong, G.Q.3    Wang, C.4    Li Sun, L.5    Clarke, N.D.6
  • 45
    • 34548154025 scopus 로고    scopus 로고
    • A systematic screen for genes expressed in definitive endoderm by Serial Analysis of Gene Expression (SAGE)
    • Aug, 17683524
    • Hou J, Charters AM, Lee SC, Zhao Y, Wu MK, Jones SJM, et al. A systematic screen for genes expressed in definitive endoderm by Serial Analysis of Gene Expression (SAGE). BMC Developmental Biology. 2007Aug;7:92. doi: 10.1186/1471-213X-7-92 17683524
    • (2007) BMC Developmental Biology , vol.7 , pp. 92
    • Hou, J.1    Charters, A.M.2    Lee, S.C.3    Zhao, Y.4    Wu, M.K.5    Jones, S.J.M.6
  • 46
    • 63449105389 scopus 로고    scopus 로고
    • Horseshoes in multidimensional scaling and local kernel methods
    • Sep
    • Diaconis P, Goel S, Holmes S, Horseshoes in multidimensional scaling and local kernel methods. The Annals of Applied Statistics. 2008Sep;2(3):777–807. doi: 10.1214/08-AOAS165
    • (2008) The Annals of Applied Statistics , vol.2 , Issue.3 , pp. 777-807
    • Diaconis, P.1    Goel, S.2    Holmes, S.3
  • 47
    • 42649093791 scopus 로고    scopus 로고
    • Interpreting principal component analyses of spatial population genetic variation
    • May, 18425127
    • Novembre J, Stephens M, Interpreting principal component analyses of spatial population genetic variation. Nature Genetics. 2008May;40(5):646–9. doi: 10.1038/ng.139 18425127
    • (2008) Nature Genetics , vol.40 , Issue.5 , pp. 646-649
    • Novembre, J.1    Stephens, M.2
  • 48
    • 65549115574 scopus 로고    scopus 로고
    • Blastocyst lineage formation, early embryonic asymmetries and axis patterning in the mouse
    • Mar, 19201946
    • Rossant J, Tam PP, Blastocyst lineage formation, early embryonic asymmetries and axis patterning in the mouse. Development. 2009Mar;136(5):701–713, doi: 10.1242/dev.017178 19201946
    • (2009) Development , vol.136 , Issue.5 , pp. 701-713
    • Rossant, J.1    Tam, P.P.2
  • 50
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies
    • Aug, 12930761
    • Falush D, Stephens M, Pritchard JK, Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics. 2003Aug;164(4):1567–87. 12930761
    • (2003) Genetics , vol.164 , Issue.4 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 51
    • 78049415423 scopus 로고    scopus 로고
    • Analysis of population Structure: A unifying framework and novel methods based on sparse factor analysis
    • Sep
    • Engelhardt BE, Stephens M, Analysis of population Structure: A unifying framework and novel methods based on sparse factor analysis. PLoS Genetics. 2010Sep;6(9):e101117. doi: 10.1371/journal.pgen.1001117
    • (2010) PLoS Genetics , vol.6 , Issue.9 , pp. e101117
    • Engelhardt, B.E.1    Stephens, M.2
  • 52
    • 70149096300 scopus 로고    scopus 로고
    • A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis
    • May, 19377034
    • Witten DM, Tibshirani R, Hastie T, A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis. Biostatistics. 2009May;10(3):515–534. doi: 10.1093/biostatistics/kxp008 19377034
    • (2009) Biostatistics , vol.10 , Issue.3 , pp. 515-534
    • Witten, D.M.1    Tibshirani, R.2    Hastie, T.3
  • 53
    • 1842539381 scopus 로고    scopus 로고
    • Bayesian model assessment in factor analysis
    • Jan
    • Lopes HF, West M, Bayesian model assessment in factor analysis. Statistica Sinica. 2004Jan;14(1):41–67.
    • (2004) Statistica Sinica , vol.14 , Issue.1 , pp. 41-67
    • Lopes, H.F.1    West, M.2
  • 54
    • 79957827711 scopus 로고    scopus 로고
    • Sparse Bayesian infinite factor models
    • Jun, 23049129
    • Bhattacharya A, Dunson DB, Sparse Bayesian infinite factor models. Biometrika. 2011Jun;98(2):291–306. doi: 10.1093/biomet/asr013 23049129
    • (2011) Biometrika , vol.98 , Issue.2 , pp. 291-306
    • Bhattacharya, A.1    Dunson, D.B.2
  • 55
    • 28744455932 scopus 로고    scopus 로고
    • Algorithms for selecting informative marker panels for population assignment
    • Nov, 16305328
    • Rosenberg NA, Algorithms for selecting informative marker panels for population assignment. Journal of Computational Biology. 2005Nov;12(9):1183–201. doi: 10.1089/cmb.2005.12.1183 16305328
    • (2005) Journal of Computational Biology , vol.12 , Issue.9 , pp. 1183-1201
    • Rosenberg, N.A.1
  • 56
    • 85016642841 scopus 로고    scopus 로고
    • Mark A, Thompson R, Afrasiabi C, Wu C. mygene: Access MyGene.Info services. Version 1.2.3 [R/Bioconductor package]. 2014. Available from:
    • Mark A, Thompson R, Afrasiabi C, Wu C. mygene: Access MyGene.Info services. Version 1.2.3 [R/Bioconductor package]. 2014. Available from: https://www.bioconductor.org/packages/release/bioc/html/mygene.html
  • 57
    • 84878682420 scopus 로고    scopus 로고
    • The Genotype-Tissue Expression (GTEx) project
    • Jun, 23715323
    • GTEx ConsortiumThe Genotype-Tissue Expression (GTEx) project. Nature Genetics. 2013Jun;45(6):580–5. doi: 10.1038/ng.2653 23715323
    • (2013) Nature Genetics , vol.45 , Issue.6 , pp. 580-585
  • 58
    • 84876008750 scopus 로고    scopus 로고
    • The ConsensusPathDB interaction database: 2013 update
    • Jan, 23143270
    • Kamburov A, Stelzl U, Lehrach H, Herwig R, The ConsensusPathDB interaction database: 2013 update. Nucleic Acids Research. 2013Jan;41(Database issue):D793–800. doi: 10.1093/nar/gks1055 23143270
    • (2013) Nucleic Acids Research , vol.41 , Issue.Database issue , pp. D793-800
    • Kamburov, A.1    Stelzl, U.2    Lehrach, H.3    Herwig, R.4
  • 59
    • 77958500367 scopus 로고    scopus 로고
    • Evidence mining and novelty assessment of protein-protein interactions with the ConsensusPathDB plugin for Cytoscape
    • Nov, 20847220
    • Pentchev K, Ono K, Herwig R, Ideker T, Kamburov A, Evidence mining and novelty assessment of protein-protein interactions with the ConsensusPathDB plugin for Cytoscape. Bioinformatics. 2010Nov;26(21):2796–7. doi: 10.1093/bioinformatics/btq522 20847220
    • (2010) Bioinformatics , vol.26 , Issue.21 , pp. 2796-2797
    • Pentchev, K.1    Ono, K.2    Herwig, R.3    Ideker, T.4    Kamburov, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.