메뉴 건너뛰기




Volumn 27, Issue 3, 2017, Pages 393-406

TRUB1 is the predominant pseudouridine synthase acting on mammalian mRNA via a predictable and conserved code

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; PSEUDOURIDINE; SYNTHETASE; TRANSFER RNA; TRUB1 PROTEIN; UNCLASSIFIED DRUG; MUTASE; PSEUDOURIDINE SYNTHASES;

EID: 85016469686     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.207613.116     Document Type: Article
Times cited : (98)

References (35)
  • 1
    • 0036529621 scopus 로고    scopus 로고
    • Comparative genomics and evolution of proteins involved in RNA metabolism
    • Anantharaman V, Koonin EV, Aravind L. 2002. Comparative genomics and evolution of proteins involved in RNA metabolism. Nucleic Acids Res 30: 1427-1464.
    • (2002) Nucleic Acids Res , vol.30 , pp. 1427-1464
    • Anantharaman, V.1    Koonin, E.V.2    Aravind, L.3
  • 2
    • 0032245524 scopus 로고    scopus 로고
    • Mapping of pseudouridine residues in RNA to nucleotide resolution
    • Bakin AV, Ofengand J. 1998. Mapping of pseudouridine residues in RNA to nucleotide resolution. Methods Mol Biol 77: 297-309.
    • (1998) Methods Mol Biol , vol.77 , pp. 297-309
    • Bakin, A.V.1    Ofengand, J.2
  • 3
    • 0030772852 scopus 로고    scopus 로고
    • The yeast gene YNL292w encodes a pseudouridine synthase (Pus4) catalyzing the formation of 55 in both mitochondrial and cytoplasmic tRNAs
    • Becker HF, Motorin Y, Planta RJ, Grosjean H. 1997. The yeast gene YNL292w encodes a pseudouridine synthase (Pus4) catalyzing the formation of 55 in both mitochondrial and cytoplasmic tRNAs. Nucleic Acids Res 25: 4493-4499.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4493-4499
    • Becker, H.F.1    Motorin, Y.2    Planta, R.J.3    Grosjean, H.4
  • 5
    • 2442691791 scopus 로고    scopus 로고
    • Missense mutation in pseudouridine synthase 1 (PUS1) causes mitochondrial myopathy and sideroblastic anemia (MLASA
    • Bykhovskaya Y, Casas K, Mengesha E, Inbal A, Fischel-Ghodsian N. 2004. Missense mutation in pseudouridine synthase 1 (PUS1) causes mitochondrial myopathy and sideroblastic anemia (MLASA). Am J Hum Genet 74: 1303-1308.
    • (2004) Am J Hum Genet , vol.74 , pp. 1303-1308
    • Bykhovskaya, Y.1    Casas, K.2    Mengesha, E.3    Inbal, A.4    Fischel-Ghodsian, N.5
  • 7
    • 0033935223 scopus 로고    scopus 로고
    • Pseudouridine in RNA: What, where, how, and why
    • Charette M, GrayMW. 2000. Pseudouridine in RNA: what, where, how, and why. IUBMB Life 49: 341-351.
    • (2000) IUBMB Life , vol.49 , pp. 341-351
    • Charette, M.1    Gray, M.W.2
  • 10
    • 0031300248 scopus 로고    scopus 로고
    • The effect of pseudouridine and pH on the structure and dynamics of the anticodon stem-loop of tRNA(Lys,3)
    • Durant PC, Davis DR. 1997. The effect of pseudouridine and pH on the structure and dynamics of the anticodon stem-loop of tRNA(Lys,3). Nucleic Acids Symp Ser 36: 56-57.
    • (1997) Nucleic Acids Symp ser , vol.36 , pp. 56-57
    • Durant, P.C.1    Davis, D.R.2
  • 11
    • 0033534387 scopus 로고    scopus 로고
    • Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine
    • Durant PC, Davis DR. 1999. Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine. J Mol Biol 285: 115-131.
    • (1999) J Mol Biol , vol.285 , pp. 115-131
    • Durant, P.C.1    Davis, D.R.2
  • 12
    • 84896541267 scopus 로고    scopus 로고
    • Nonsense mutation in pseudouridylate synthase 1 (PUS1) in two brothers affected by myopathy, lactic acidosis and sideroblastic anaemia (MLASA)
    • Fernandez-Vizarra E, Berardinelli A, Valente L, Tiranti V, Zeviani M. 2009. Nonsense mutation in pseudouridylate synthase 1 (PUS1) in two brothers affected by myopathy, lactic acidosis and sideroblastic anaemia (MLASA). BMJ Case Rep 2009. doi: 10.1136/bcr.05.2009.1889.
    • (2009) BMJ Case Rep , vol.2009
    • Fernandez-Vizarra, E.1    Berardinelli, A.2    Valente, L.3    Tiranti, V.4    Zeviani, M.5
  • 13
    • 0032488604 scopus 로고    scopus 로고
    • Molecular recognition of tRNA by tRNA pseudouridine 55 synthase
    • Gu X, Yu M, Ivanetich KM, Santi DV. 1998. Molecular recognition of tRNA by tRNA pseudouridine 55 synthase. Biochemistry 37: 339-343.
    • (1998) Biochemistry , vol.37 , pp. 339-343
    • Gu, X.1    Yu, M.2    Ivanetich, K.M.3    Santi, D.V.4
  • 14
    • 0029832294 scopus 로고    scopus 로고
    • Identification of new RNA modifying enzymes by iterative genome search using known modifying enzymes as probes
    • Gustafsson C, Reid R, Greene PJ, Santi DV. 1996. Identification of new RNA modifying enzymes by iterative genome search using known modifying enzymes as probes. Nucleic Acids Res 24: 3756-3762.
    • (1996) Nucleic Acids Res , vol.24 , pp. 3756-3762
    • Gustafsson, C.1    Reid, R.2    Greene, P.J.3    Santi, D.V.4
  • 16
    • 0035966271 scopus 로고    scopus 로고
    • Cocrystal structure of a tRNA 55 pseudouridine synthase: Nucleotide flipping by an RNA-modifying enzyme
    • Hoang C, Ferré-D'Amaré AR. 2001. Cocrystal structure of a tRNA 55 pseudouridine synthase: nucleotide flipping by an RNA-modifying enzyme. Cell 107: 929-939.
    • (2001) Cell , vol.107 , pp. 929-939
    • Hoang, C.1    Ferré-D'Amaré, A.R.2
  • 17
    • 79959284255 scopus 로고    scopus 로고
    • Converting nonsense codons into sense codons by targeted pseudouridylation
    • Karijolich J, Yu Y-T. 2011. Converting nonsense codons into sense codons by targeted pseudouridylation. Nature 474: 395-398.
    • (2011) Nature , vol.474 , pp. 395-398
    • Karijolich, J.1    Yu, Y.-T.2
  • 19
    • 0029945504 scopus 로고    scopus 로고
    • Pseudouridine synthases: Four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases
    • Koonin EV. 1996. Pseudouridine synthases: four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases. Nucleic Acids Res 24: 2411-2415.
    • (1996) Nucleic Acids Res , vol.24 , pp. 2411-2415
    • Koonin, E.V.1
  • 20
    • 0031914957 scopus 로고    scopus 로고
    • Characterization of yeast protein Deg1 as pseudouridine synthase (Pus3) catalyzing the formation of 38 and 39 in tRNA anticodon loop
    • Lecointe F, Simos G, Sauer A, Hurt EC, Motorin Y, Grosjean H. 1998. Characterization of yeast protein Deg1 as pseudouridine synthase (Pus3) catalyzing the formation of 38 and 39 in tRNA anticodon loop. J Biol Chem 273: 1316-1323.
    • (1998) J Biol Chem , vol.273 , pp. 1316-1323
    • Lecointe, F.1    Simos, G.2    Sauer, A.3    Hurt, E.C.4    Motorin, Y.5    Grosjean, H.6
  • 21
    • 84937514684 scopus 로고    scopus 로고
    • Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome
    • Li X, Zhu P, Ma S, Song J, Bai J, Sun F, Yi C. 2015. Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome. Nat Chem Biol 11: 592-597.
    • (2015) Nat Chem Biol , vol.11 , pp. 592-597
    • Li, X.1    Zhu, P.2    Ma, S.3    Song, J.4    Bai, J.5    Sun, F.6    Yi, C.7
  • 22
    • 84957828213 scopus 로고    scopus 로고
    • Transcriptomewide mapping reveals reversible and dynamic N1-methyladenosine methylome
    • Li X, Xiong X, Wang K, Wang L, Shu X, Ma S, Yi C. 2016. Transcriptomewide mapping reveals reversible and dynamic N1-methyladenosine methylome. Nat Chem Biol 12: 311-316.
    • (2016) Nat Chem Biol , vol.12 , pp. 311-316
    • Li, X.1    Xiong, X.2    Wang, K.3    Wang, L.4    Shu, X.5    Ma, S.6    Yi, C.7
  • 23
    • 84924072927 scopus 로고    scopus 로고
    • N6-methyladenosinedependent RNA structural switches regulate RNA-protein interactions
    • Liu N, Dai Q, Zheng G, He C, Parisien M, Pan T. 2015. N6-methyladenosinedependent RNA structural switches regulate RNA-protein interactions. Nature 518: 560-564.
    • (2015) Nature , vol.518 , pp. 560-564
    • Liu, N.1    Dai, Q.2    Zheng, G.3    He, C.4    Parisien, M.5    Pan, T.6
  • 24
    • 84908626586 scopus 로고    scopus 로고
    • Transcriptome-wide mapping of pseudouridines: Pseudouridine synthases modify specific mRNAs in S. Cerevisiae
    • Lovejoy AF, Riordan DP, Brown PO. 2014. Transcriptome-wide mapping of pseudouridines: Pseudouridine synthases modify specific mRNAs in S. cerevisiae. PLoS One 9: e110799.
    • (2014) PLoS One , vol.9 , pp. e110799
    • Lovejoy, A.F.1    Riordan, D.P.2    Brown, P.O.3
  • 26
    • 84923011476 scopus 로고    scopus 로고
    • Small RNAs with big implications: New insights into H/ACA snoRNA function and their role in human disease
    • McMahon M, Contreras A, Ruggero D. 2015. Small RNAs with big implications: new insights into H/ACA snoRNA function and their role in human disease. Wiley Interdiscip Rev RNA 6: 173-189.
    • (2015) Wiley Interdiscip Rev RNA , vol.6 , pp. 173-189
    • McMahon, M.1    Contreras, A.2    Ruggero, D.3
  • 27
    • 84862649489 scopus 로고    scopus 로고
    • Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons
    • Meyer K, Saletore Y, Zumbo P, Elemento O, Mason C, Jaffrey S. 2012. Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons. Cell 149: 1635-1646.
    • (2012) Cell , vol.149 , pp. 1635-1646
    • Meyer, K.1    Saletore, Y.2    Zumbo, P.3    Elemento, O.4    Mason, C.5    Jaffrey, S.6
  • 28
    • 0029258983 scopus 로고
    • Purification, cloning, and properties of the tRNA 55 synthase from Escherichia coli
    • Nurse K, Wrzesinski J, Bakin A, Lane BG, Ofengand J. 1995. Purification, cloning, and properties of the tRNA 55 synthase from Escherichia coli. RNA 1: 102-112.
    • (1995) RNA , vol.1 , pp. 102-112
    • Nurse, K.1    Wrzesinski, J.2    Bakin, A.3    Lane, B.G.4    Ofengand, J.5
  • 31
    • 84964036730 scopus 로고    scopus 로고
    • A homozygous truncating mutation in PUS3 expands the role of tRNA modification in normal cognition
    • Shaheen R, Han L, Faqeih E, Ewida N, Alobeid E, Phizicky EM, Alkuraya FS. 2016. A homozygous truncating mutation in PUS3 expands the role of tRNA modification in normal cognition. Hum Genet 135: 707-713.
    • (2016) Hum Genet , vol.135 , pp. 707-713
    • Shaheen, R.1    Han, L.2    Faqeih, E.3    Ewida, N.4    Alobeid, E.5    Phizicky, E.M.6    Alkuraya, F.S.7
  • 32
    • 84924914622 scopus 로고    scopus 로고
    • Pseudouridine: Still mysterious, but never a fake (uridine)!
    • Spenkuch F, Motorin Y, Helm M. 2014. Pseudouridine: still mysterious, but never a fake (uridine)! RNA Biol 11: 1540-1554.
    • (2014) RNA Biol , vol.11 , pp. 1540-1554
    • Spenkuch, F.1    Motorin, Y.2    Helm, M.3
  • 34
    • 84941712451 scopus 로고    scopus 로고
    • N6-methyladenosine modification in a long non-coding RNA hairpin predisposes its conformation to protein binding
    • Zhou KI, Parisien M, Dai Q, Liu N, Diatchenko L, Sachleben JR, Pan T. 2015. N6-methyladenosine modification in a long non-coding RNA hairpin predisposes its conformation to protein binding. J Mol Biol 428: 822-833.
    • (2015) J Mol Biol , vol.428 , pp. 822-833
    • Zhou, K.I.1    Parisien, M.2    Dai, Q.3    Liu, N.4    Diatchenko, L.5    Sachleben, J.R.6    Pan, T.7
  • 35
    • 1542390747 scopus 로고    scopus 로고
    • The human TruB family of pseudouridine synthase genes, including the Dyskeratosis Congenita 1 gene and the novelmember TRUB1
    • Zucchini C, Strippoli P, Biolchi A, Solmi R, Lenzi L, D'Addabbo P, Carinci P, Valvassori L. 2003. The human TruB family of pseudouridine synthase genes, including the Dyskeratosis Congenita 1 gene and the novelmember TRUB1. Int J Mol Med 11: 697-704.
    • (2003) Int J Mol Med , vol.11 , pp. 697-704
    • Zucchini, C.1    Strippoli, P.2    Biolchi, A.3    Solmi, R.4    Lenzi, L.5    D'Addabbo, P.6    Carinci, P.7    Valvassori, L.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.