-
1
-
-
70350023619
-
The maternal-to-zygotic transition: A play in two acts
-
Tadros, W. & Lipshitz, H. D. The maternal-to-zygotic transition: a play in two acts. Development 136, 3033-3042 (2009).
-
(2009)
Development
, vol.136
, pp. 3033-3042
-
-
Tadros, W.1
Lipshitz, H.D.2
-
2
-
-
84964314537
-
Zygotic genome activation during the maternal-to-zygotic transition
-
Lee, M. T., Bonneau, A. R. & Giraldez, A. J. Zygotic genome activation during the maternal-to-zygotic transition. Annu. Rev. Cell Dev. Biol. 30, 581-613 (2014).
-
(2014)
Annu. Rev. Cell Dev. Biol.
, vol.30
, pp. 581-613
-
-
Lee, M.T.1
Bonneau, A.R.2
Giraldez, A.J.3
-
3
-
-
79960930489
-
Transcript clearance during the maternalto-zygotic transition
-
Walser, C. B. & Lipshitz, H. D. Transcript clearance during the maternalto-zygotic transition. Curr. Opin. Genet. Dev. 21, 431-443 (2011).
-
(2011)
Curr. Opin. Genet. Dev.
, vol.21
, pp. 431-443
-
-
Walser, C.B.1
Lipshitz, H.D.2
-
4
-
-
33645124258
-
Zebrafish MIR-430 promotes deadenylation and clearance of maternal mRNAs
-
Giraldez, A. J. et al. Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs. Science 312, 75-79 (2006).
-
(2006)
Science
, vol.312
, pp. 75-79
-
-
Giraldez, A.J.1
-
5
-
-
84962533940
-
Codon usage and 3' UTR length determine maternal mRNA stability in zebrafish
-
Mishima, Y. & Tomari, Y. Codon usage and 3' UTR length determine maternal mRNA stability in zebrafish. Mol. Cell 61, 874-885 (2016).
-
(2016)
Mol. Cell
, vol.61
, pp. 874-885
-
-
Mishima, Y.1
Tomari, Y.2
-
6
-
-
30544437719
-
Transcriptome analysis of zebrafish embryogenesis using microarrays
-
Mathavan, S. et al. Transcriptome analysis of zebrafish embryogenesis using microarrays. PLoS Genet. 1, 260-276 (2005).
-
(2005)
PLoS Genet.
, vol.1
, pp. 260-276
-
-
Mathavan, S.1
-
7
-
-
80051555960
-
Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition
-
Aanes, H. et al. Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition. Genome Res. 21, 1328-1338 (2011).
-
(2011)
Genome Res.
, vol.21
, pp. 1328-1338
-
-
Aanes, H.1
-
8
-
-
84919952154
-
High-resolution sequencing and modeling identifies distinct dynamic RNA regulatory strategies
-
Rabani, M. et al. High-resolution sequencing and modeling identifies distinct dynamic RNA regulatory strategies. Cell 159, 1698-1710 (2014).
-
(2014)
Cell
, vol.159
, pp. 1698-1710
-
-
Rabani, M.1
-
9
-
-
85006500569
-
Characterization of Novikoff Hepatoma messenger-RNA methylation
-
Desrosiers, R., Friderici, K. & Rottman, F. Characterization of Novikoff Hepatoma messenger-RNA methylation. Fed. Proc. 34, 628-628 (1975).
-
(1975)
Fed. Proc.
, vol.34
, pp. 628
-
-
Desrosiers, R.1
Friderici, K.2
Rottman, F.3
-
10
-
-
81355146483
-
N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO
-
Jia, G. et al. N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO. Nat. Chem. Biol. 7, 885-887 (2011).
-
(2011)
Nat. Chem. Biol.
, vol.7
, pp. 885-887
-
-
Jia, G.1
-
11
-
-
84872274463
-
ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility
-
Zheng, G. et al. ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility. Mol. Cell 49, 18-29 (2013).
-
(2013)
Mol. Cell
, vol.49
, pp. 18-29
-
-
Zheng, G.1
-
12
-
-
84897110592
-
A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation
-
Liu, J. et al. A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation. Nat. Chem. Biol. 10, 93-95 (2014).
-
(2014)
Nat. Chem. Biol.
, vol.10
, pp. 93-95
-
-
Liu, J.1
-
13
-
-
84892372347
-
N6-methyladenosine-dependent regulation of messenger RNA stability
-
Wang, X. et al. N6-methyladenosine-dependent regulation of messenger RNA stability. Nature 505, 117-120 (2014).
-
(2014)
Nature
, vol.505
, pp. 117-120
-
-
Wang, X.1
-
14
-
-
84922342926
-
Stem cells. M6A mRNA methylation facilitates resolution of naive pluripotency toward differentiation
-
Geula, S. et al. Stem cells. m6A mRNA methylation facilitates resolution of naive pluripotency toward differentiation. Science 347, 1002-1006 (2015).
-
(2015)
Science
, vol.347
, pp. 1002-1006
-
-
Geula, S.1
-
15
-
-
84919457819
-
M6A RNA modification controls cell fate transition in mammalian embryonic stem cells
-
Batista, P. J. et al. m6A RNA modification controls cell fate transition in mammalian embryonic stem cells. Cell Stem Cell 15, 707-719 (2014).
-
(2014)
Cell Stem Cell
, vol.15
, pp. 707-719
-
-
Batista, P.J.1
-
16
-
-
84893310526
-
N6-methyladenosine modification destabilizes developmental regulators in embryonic stem cells
-
Wang, Y. et al. N6-methyladenosine modification destabilizes developmental regulators in embryonic stem cells. Nat. Cell Biol. 16, 191-198 (2014).
-
(2014)
Nat. Cell Biol.
, vol.16
, pp. 191-198
-
-
Wang, Y.1
-
17
-
-
0027386243
-
The zebrafish midblastula transition
-
Kane, D. A. & Kimmel, C. B. The zebrafish midblastula transition. Development 119, 447-456 (1993).
-
(1993)
Development
, vol.119
, pp. 447-456
-
-
Kane, D.A.1
Kimmel, C.B.2
-
18
-
-
84860779086
-
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
-
Dominissini, D. et al. Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq. Nature 485, 201-206 (2012).
-
(2012)
Nature
, vol.485
, pp. 201-206
-
-
Dominissini, D.1
-
19
-
-
84921512407
-
High-resolution N6 -methyladenosine (m6A) map using photo-crosslinking-assisted m6A sequencing
-
Chen, K. et al. High-resolution N6 -methyladenosine (m6A) map using photo-crosslinking-assisted m6A sequencing. Angew. Chem. Int. Ed. 54, 1587-1590 (2015).
-
(2015)
Angew. Chem. Int. Ed.
, vol.54
, pp. 1587-1590
-
-
Chen, K.1
-
20
-
-
84938417580
-
Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome
-
Linder, B. et al. Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome. Nat. Methods 12, 767-772 (2015).
-
(2015)
Nat. Methods
, vol.12
, pp. 767-772
-
-
Linder, B.1
-
21
-
-
84862649489
-
Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons
-
Meyer, K. D. et al. Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons. Cell 149, 1635-1646 (2012).
-
(2012)
Cell
, vol.149
, pp. 1635-1646
-
-
Meyer, K.D.1
-
22
-
-
84890107723
-
High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis
-
Schwartz, S. et al. High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis. Cell 155, 1409-1421 (2013).
-
(2013)
Cell
, vol.155
, pp. 1409-1421
-
-
Schwartz, S.1
-
23
-
-
33645217973
-
Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster
-
Gerber, A. P., Luschnig, S., Krasnow, M. A., Brown, P. O. & Herschlag, D. Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster. Proc. Natl Acad. Sci. USA 103, 4487-4492 (2006).
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 4487-4492
-
-
Gerber, A.P.1
Luschnig, S.2
Krasnow, M.A.3
Brown, P.O.4
Herschlag, D.5
-
24
-
-
84939141051
-
Brain tumor is a sequence-specific RNA-binding protein that directs maternal mRNA clearance during the Drosophila maternal-to-zygotic transition
-
Laver, J. D. et al. Brain tumor is a sequence-specific RNA-binding protein that directs maternal mRNA clearance during the Drosophila maternal-to-zygotic transition. Genome Biol. 16, 94 (2015).
-
(2015)
Genome Biol.
, vol.16
, pp. 94
-
-
Laver, J.D.1
-
25
-
-
84905732318
-
Global characterization of the oocyte-to-embryo transition in Caenorhabditis elegans uncovers a novel mRNA clearance mechanism
-
Stoeckius, M. et al. Global characterization of the oocyte-to-embryo transition in Caenorhabditis elegans uncovers a novel mRNA clearance mechanism. EMBO J. 33, 1751-1766 (2014).
-
(2014)
EMBO J.
, vol.33
, pp. 1751-1766
-
-
Stoeckius, M.1
-
26
-
-
0029045033
-
Stages of embryonic development of the zebrafish
-
Kimmel, C. B., Ballard, W. W., Kimmel, S. R., Ullmann, B. & Schilling, T. F. Stages of embryonic development of the zebrafish. Dev. Dyn. 203, 253-310 (1995).
-
(1995)
Dev. Dyn.
, vol.203
, pp. 253-310
-
-
Kimmel, C.B.1
Ballard, W.W.2
Kimmel, S.R.3
Ullmann, B.4
Schilling, T.F.5
-
27
-
-
84921741417
-
In situ hybridization on whole-mount zebrafish embryos and young larvae
-
Thisse, B. & Thisse, C. In situ hybridization on whole-mount zebrafish embryos and young larvae. Methods Mol. Biol. 1211, 53-67 (2014).
-
(2014)
Methods Mol. Biol.
, vol.1211
, pp. 53-67
-
-
Thisse, B.1
Thisse, C.2
-
28
-
-
84876996918
-
TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
-
Kim, D. et al. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 14, R36 (2013).
-
(2013)
Genome Biol.
, vol.14
, pp. R36
-
-
Kim, D.1
-
29
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
Heinz, S. et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 38, 576-589 (2010).
-
(2010)
Mol. Cell
, vol.38
, pp. 576-589
-
-
Heinz, S.1
-
30
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell, C. et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28, 511-515 (2010).
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
-
31
-
-
3142756502
-
Open source clustering software
-
de Hoon, M. J. L., Imoto, S., Nolan, J. & Miyano, S. Open source clustering software. Bioinformatics 20, 1453-1454 (2004).
-
(2004)
Bioinformatics
, vol.20
, pp. 1453-1454
-
-
De Hoon, M.J.L.1
Imoto, S.2
Nolan, J.3
Miyano, S.4
-
32
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang, W., Sherman, B. T. & Lempicki, R. A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protocols 4, 44-57 (2009).
-
(2009)
Nat. Protocols
, vol.4
, pp. 44-57
-
-
Huang, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
33
-
-
58549112996
-
Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
-
Huang, W., Sherman, B. T. & Lempicki, R. A. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 37, 1-13 (2009).
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1-13
-
-
Huang, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
34
-
-
79960610118
-
REVIGO summarizes and visualizes long lists of gene ontology terms
-
Supek, F., Bosnjak, M., Skunca, N. & Smuc, T. REVIGO summarizes and visualizes long lists of gene ontology terms. PLoS One 6, e21800 (2011).
-
(2011)
PLoS One
, vol.6
, pp. e21800
-
-
Supek, F.1
Bosnjak, M.2
Skunca, N.3
Smuc, T.4
-
35
-
-
84862778053
-
Ribosome profiling shows that MIR-430 reduces translation before causing mRNA decay in zebrafish
-
Bazzini, A. A., Lee, M. T. & Giraldez, A. J. Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish. Science 336, 233-237 (2012).
-
(2012)
Science
, vol.336
, pp. 233-237
-
-
Bazzini, A.A.1
Lee, M.T.2
Giraldez, A.J.3
-
36
-
-
84888038427
-
Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition
-
Lee, M. T. et al. Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition. Nature 503, 360-364 (2013).
-
(2013)
Nature
, vol.503
, pp. 360-364
-
-
Lee, M.T.1
|