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Volumn 542, Issue 7642, 2017, Pages 475-478

M6 A-dependent maternal mRNA clearance facilitates zebrafish maternal-to-zygotic transition

Author keywords

[No Author keywords available]

Indexed keywords

6 N METHYLADENOSINE; BINDING PROTEIN; CYCLINE; DNA; MESSENGER RNA; PROTEIN YTHDF2; UNCLASSIFIED DRUG; ADENOSINE; N(6)-METHYLADENOSINE; RNA BINDING PROTEIN; YTHDF2 PROTEIN, ZEBRAFISH; ZEBRAFISH PROTEIN;

EID: 85016160834     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature21355     Document Type: Article
Times cited : (441)

References (36)
  • 1
    • 70350023619 scopus 로고    scopus 로고
    • The maternal-to-zygotic transition: A play in two acts
    • Tadros, W. & Lipshitz, H. D. The maternal-to-zygotic transition: a play in two acts. Development 136, 3033-3042 (2009).
    • (2009) Development , vol.136 , pp. 3033-3042
    • Tadros, W.1    Lipshitz, H.D.2
  • 2
    • 84964314537 scopus 로고    scopus 로고
    • Zygotic genome activation during the maternal-to-zygotic transition
    • Lee, M. T., Bonneau, A. R. & Giraldez, A. J. Zygotic genome activation during the maternal-to-zygotic transition. Annu. Rev. Cell Dev. Biol. 30, 581-613 (2014).
    • (2014) Annu. Rev. Cell Dev. Biol. , vol.30 , pp. 581-613
    • Lee, M.T.1    Bonneau, A.R.2    Giraldez, A.J.3
  • 3
    • 79960930489 scopus 로고    scopus 로고
    • Transcript clearance during the maternalto-zygotic transition
    • Walser, C. B. & Lipshitz, H. D. Transcript clearance during the maternalto-zygotic transition. Curr. Opin. Genet. Dev. 21, 431-443 (2011).
    • (2011) Curr. Opin. Genet. Dev. , vol.21 , pp. 431-443
    • Walser, C.B.1    Lipshitz, H.D.2
  • 4
    • 33645124258 scopus 로고    scopus 로고
    • Zebrafish MIR-430 promotes deadenylation and clearance of maternal mRNAs
    • Giraldez, A. J. et al. Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs. Science 312, 75-79 (2006).
    • (2006) Science , vol.312 , pp. 75-79
    • Giraldez, A.J.1
  • 5
    • 84962533940 scopus 로고    scopus 로고
    • Codon usage and 3' UTR length determine maternal mRNA stability in zebrafish
    • Mishima, Y. & Tomari, Y. Codon usage and 3' UTR length determine maternal mRNA stability in zebrafish. Mol. Cell 61, 874-885 (2016).
    • (2016) Mol. Cell , vol.61 , pp. 874-885
    • Mishima, Y.1    Tomari, Y.2
  • 6
    • 30544437719 scopus 로고    scopus 로고
    • Transcriptome analysis of zebrafish embryogenesis using microarrays
    • Mathavan, S. et al. Transcriptome analysis of zebrafish embryogenesis using microarrays. PLoS Genet. 1, 260-276 (2005).
    • (2005) PLoS Genet. , vol.1 , pp. 260-276
    • Mathavan, S.1
  • 7
    • 80051555960 scopus 로고    scopus 로고
    • Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition
    • Aanes, H. et al. Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition. Genome Res. 21, 1328-1338 (2011).
    • (2011) Genome Res. , vol.21 , pp. 1328-1338
    • Aanes, H.1
  • 8
    • 84919952154 scopus 로고    scopus 로고
    • High-resolution sequencing and modeling identifies distinct dynamic RNA regulatory strategies
    • Rabani, M. et al. High-resolution sequencing and modeling identifies distinct dynamic RNA regulatory strategies. Cell 159, 1698-1710 (2014).
    • (2014) Cell , vol.159 , pp. 1698-1710
    • Rabani, M.1
  • 9
    • 85006500569 scopus 로고
    • Characterization of Novikoff Hepatoma messenger-RNA methylation
    • Desrosiers, R., Friderici, K. & Rottman, F. Characterization of Novikoff Hepatoma messenger-RNA methylation. Fed. Proc. 34, 628-628 (1975).
    • (1975) Fed. Proc. , vol.34 , pp. 628
    • Desrosiers, R.1    Friderici, K.2    Rottman, F.3
  • 10
    • 81355146483 scopus 로고    scopus 로고
    • N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO
    • Jia, G. et al. N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO. Nat. Chem. Biol. 7, 885-887 (2011).
    • (2011) Nat. Chem. Biol. , vol.7 , pp. 885-887
    • Jia, G.1
  • 11
    • 84872274463 scopus 로고    scopus 로고
    • ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility
    • Zheng, G. et al. ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility. Mol. Cell 49, 18-29 (2013).
    • (2013) Mol. Cell , vol.49 , pp. 18-29
    • Zheng, G.1
  • 12
    • 84897110592 scopus 로고    scopus 로고
    • A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation
    • Liu, J. et al. A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation. Nat. Chem. Biol. 10, 93-95 (2014).
    • (2014) Nat. Chem. Biol. , vol.10 , pp. 93-95
    • Liu, J.1
  • 13
    • 84892372347 scopus 로고    scopus 로고
    • N6-methyladenosine-dependent regulation of messenger RNA stability
    • Wang, X. et al. N6-methyladenosine-dependent regulation of messenger RNA stability. Nature 505, 117-120 (2014).
    • (2014) Nature , vol.505 , pp. 117-120
    • Wang, X.1
  • 14
    • 84922342926 scopus 로고    scopus 로고
    • Stem cells. M6A mRNA methylation facilitates resolution of naive pluripotency toward differentiation
    • Geula, S. et al. Stem cells. m6A mRNA methylation facilitates resolution of naive pluripotency toward differentiation. Science 347, 1002-1006 (2015).
    • (2015) Science , vol.347 , pp. 1002-1006
    • Geula, S.1
  • 15
    • 84919457819 scopus 로고    scopus 로고
    • M6A RNA modification controls cell fate transition in mammalian embryonic stem cells
    • Batista, P. J. et al. m6A RNA modification controls cell fate transition in mammalian embryonic stem cells. Cell Stem Cell 15, 707-719 (2014).
    • (2014) Cell Stem Cell , vol.15 , pp. 707-719
    • Batista, P.J.1
  • 16
    • 84893310526 scopus 로고    scopus 로고
    • N6-methyladenosine modification destabilizes developmental regulators in embryonic stem cells
    • Wang, Y. et al. N6-methyladenosine modification destabilizes developmental regulators in embryonic stem cells. Nat. Cell Biol. 16, 191-198 (2014).
    • (2014) Nat. Cell Biol. , vol.16 , pp. 191-198
    • Wang, Y.1
  • 17
    • 0027386243 scopus 로고
    • The zebrafish midblastula transition
    • Kane, D. A. & Kimmel, C. B. The zebrafish midblastula transition. Development 119, 447-456 (1993).
    • (1993) Development , vol.119 , pp. 447-456
    • Kane, D.A.1    Kimmel, C.B.2
  • 18
    • 84860779086 scopus 로고    scopus 로고
    • Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
    • Dominissini, D. et al. Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq. Nature 485, 201-206 (2012).
    • (2012) Nature , vol.485 , pp. 201-206
    • Dominissini, D.1
  • 19
    • 84921512407 scopus 로고    scopus 로고
    • High-resolution N6 -methyladenosine (m6A) map using photo-crosslinking-assisted m6A sequencing
    • Chen, K. et al. High-resolution N6 -methyladenosine (m6A) map using photo-crosslinking-assisted m6A sequencing. Angew. Chem. Int. Ed. 54, 1587-1590 (2015).
    • (2015) Angew. Chem. Int. Ed. , vol.54 , pp. 1587-1590
    • Chen, K.1
  • 20
    • 84938417580 scopus 로고    scopus 로고
    • Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome
    • Linder, B. et al. Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome. Nat. Methods 12, 767-772 (2015).
    • (2015) Nat. Methods , vol.12 , pp. 767-772
    • Linder, B.1
  • 21
    • 84862649489 scopus 로고    scopus 로고
    • Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons
    • Meyer, K. D. et al. Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons. Cell 149, 1635-1646 (2012).
    • (2012) Cell , vol.149 , pp. 1635-1646
    • Meyer, K.D.1
  • 22
    • 84890107723 scopus 로고    scopus 로고
    • High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis
    • Schwartz, S. et al. High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis. Cell 155, 1409-1421 (2013).
    • (2013) Cell , vol.155 , pp. 1409-1421
    • Schwartz, S.1
  • 23
    • 33645217973 scopus 로고    scopus 로고
    • Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster
    • Gerber, A. P., Luschnig, S., Krasnow, M. A., Brown, P. O. & Herschlag, D. Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster. Proc. Natl Acad. Sci. USA 103, 4487-4492 (2006).
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 4487-4492
    • Gerber, A.P.1    Luschnig, S.2    Krasnow, M.A.3    Brown, P.O.4    Herschlag, D.5
  • 24
    • 84939141051 scopus 로고    scopus 로고
    • Brain tumor is a sequence-specific RNA-binding protein that directs maternal mRNA clearance during the Drosophila maternal-to-zygotic transition
    • Laver, J. D. et al. Brain tumor is a sequence-specific RNA-binding protein that directs maternal mRNA clearance during the Drosophila maternal-to-zygotic transition. Genome Biol. 16, 94 (2015).
    • (2015) Genome Biol. , vol.16 , pp. 94
    • Laver, J.D.1
  • 25
    • 84905732318 scopus 로고    scopus 로고
    • Global characterization of the oocyte-to-embryo transition in Caenorhabditis elegans uncovers a novel mRNA clearance mechanism
    • Stoeckius, M. et al. Global characterization of the oocyte-to-embryo transition in Caenorhabditis elegans uncovers a novel mRNA clearance mechanism. EMBO J. 33, 1751-1766 (2014).
    • (2014) EMBO J. , vol.33 , pp. 1751-1766
    • Stoeckius, M.1
  • 27
    • 84921741417 scopus 로고    scopus 로고
    • In situ hybridization on whole-mount zebrafish embryos and young larvae
    • Thisse, B. & Thisse, C. In situ hybridization on whole-mount zebrafish embryos and young larvae. Methods Mol. Biol. 1211, 53-67 (2014).
    • (2014) Methods Mol. Biol. , vol.1211 , pp. 53-67
    • Thisse, B.1    Thisse, C.2
  • 28
    • 84876996918 scopus 로고    scopus 로고
    • TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
    • Kim, D. et al. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 14, R36 (2013).
    • (2013) Genome Biol. , vol.14 , pp. R36
    • Kim, D.1
  • 29
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • Heinz, S. et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 38, 576-589 (2010).
    • (2010) Mol. Cell , vol.38 , pp. 576-589
    • Heinz, S.1
  • 30
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
    • Trapnell, C. et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28, 511-515 (2010).
    • (2010) Nat. Biotechnol. , vol.28 , pp. 511-515
    • Trapnell, C.1
  • 32
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang, W., Sherman, B. T. & Lempicki, R. A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protocols 4, 44-57 (2009).
    • (2009) Nat. Protocols , vol.4 , pp. 44-57
    • Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 33
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
    • Huang, W., Sherman, B. T. & Lempicki, R. A. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 37, 1-13 (2009).
    • (2009) Nucleic Acids Res. , vol.37 , pp. 1-13
    • Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 34
    • 79960610118 scopus 로고    scopus 로고
    • REVIGO summarizes and visualizes long lists of gene ontology terms
    • Supek, F., Bosnjak, M., Skunca, N. & Smuc, T. REVIGO summarizes and visualizes long lists of gene ontology terms. PLoS One 6, e21800 (2011).
    • (2011) PLoS One , vol.6 , pp. e21800
    • Supek, F.1    Bosnjak, M.2    Skunca, N.3    Smuc, T.4
  • 35
    • 84862778053 scopus 로고    scopus 로고
    • Ribosome profiling shows that MIR-430 reduces translation before causing mRNA decay in zebrafish
    • Bazzini, A. A., Lee, M. T. & Giraldez, A. J. Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish. Science 336, 233-237 (2012).
    • (2012) Science , vol.336 , pp. 233-237
    • Bazzini, A.A.1    Lee, M.T.2    Giraldez, A.J.3
  • 36
    • 84888038427 scopus 로고    scopus 로고
    • Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition
    • Lee, M. T. et al. Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition. Nature 503, 360-364 (2013).
    • (2013) Nature , vol.503 , pp. 360-364
    • Lee, M.T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.