-
1
-
-
60149099385
-
Evolution and functions of long noncoding RNAs
-
Ponting, C.P., Oliver, P.L. and Reik, W. (2009) Evolution and functions of long noncoding RNAs. Cell, 136, 629-641.
-
(2009)
Cell
, vol.136
, pp. 629-641
-
-
Ponting, C.P.1
Oliver, P.L.2
Reik, W.3
-
2
-
-
38649114329
-
Specific expression of long noncoding RNAs in the mouse brain
-
Mercer, T.R., Dinger, M.E., Sunkin, S.M., Mehler, M.F. and Mattick, J.S. (2008) Specific expression of long noncoding RNAs in the mouse brain. Proc. Natl. Acad. Sci. U.S.A., 105, 716-721.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 716-721
-
-
Mercer, T.R.1
Dinger, M.E.2
Sunkin, S.M.3
Mehler, M.F.4
Mattick, J.S.5
-
3
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel, D.P. (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell, 116, 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
4
-
-
58249088751
-
MicroRNAs: Target recognition and regulatory functions
-
Bartel, D.P. (2009) MicroRNAs: target recognition and regulatory functions. Cell, 136, 215-233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
5
-
-
84890559595
-
Long non-coding RNAs: New players in cell differentiation and development
-
Fatica, A. and Bozzoni, I. (2014) Long non-coding RNAs: new players in cell differentiation and development. Nat. Rev. Genet., 15, 7-21.
-
(2014)
Nat. Rev. Genet.
, vol.15
, pp. 7-21
-
-
Fatica, A.1
Bozzoni, I.2
-
6
-
-
0036703184
-
The expanding snoRNA world
-
Bachellerie, J.P., Cavaille, J. and Huttenhofer, A. (2002) The expanding snoRNA world. Biochimie, 84, 775-790.
-
(2002)
Biochimie
, vol.84
, pp. 775-790
-
-
Bachellerie, J.P.1
Cavaille, J.2
Huttenhofer, A.3
-
7
-
-
77955902024
-
The widespread regulation of microRNA biogenesis, function and decay
-
Krol, J., Loedige, I. and Filipowicz, W. (2010) The widespread regulation of microRNA biogenesis, function and decay. Nat. Rev. Genet., 11, 597-610.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 597-610
-
-
Krol, J.1
Loedige, I.2
Filipowicz, W.3
-
8
-
-
48449084118
-
Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells
-
Marson, A., Levine, S.S., Cole, M.F., Frampton, G.M., Brambrink, T., Johnstone, S., Guenther, M.G., Johnston, W.K., Wernig, M., Newman, J. et al. (2008) Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells. Cell, 134, 521-533.
-
(2008)
Cell
, vol.134
, pp. 521-533
-
-
Marson, A.1
Levine, S.S.2
Cole, M.F.3
Frampton, G.M.4
Brambrink, T.5
Johnstone, S.6
Guenther, M.G.7
Johnston, W.K.8
Wernig, M.9
Newman, J.10
-
9
-
-
80052869283
-
LincRNAs act in the circuitry controlling pluripotency and differentiation
-
Guttman, M., Donaghey, J., Carey, B.W., Garber, M., Grenier, J.K., Munson, G., Young, G., Lucas, A.B., Ach, R., Bruhn, L. et al. (2011) lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature, 477, 295-300.
-
(2011)
Nature
, vol.477
, pp. 295-300
-
-
Guttman, M.1
Donaghey, J.2
Carey, B.W.3
Garber, M.4
Grenier, J.K.5
Munson, G.6
Young, G.7
Lucas, A.B.8
Ach, R.9
Bruhn, L.10
-
10
-
-
84655173624
-
Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells
-
Lee, B.K., Bhinge, A.A., Battenhouse, A., McDaniell, R.M., Liu, Z., Song, L., Ni, Y., Birney, E., Lieb, J.D., Furey, T.S. et al. (2012) Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells. Genome Res., 22, 9-24.
-
(2012)
Genome Res.
, vol.22
, pp. 9-24
-
-
Lee, B.K.1
Bhinge, A.A.2
Battenhouse, A.3
McDaniell, R.M.4
Liu, Z.5
Song, L.6
Ni, Y.7
Birney, E.8
Lieb, J.D.9
Furey, T.S.10
-
11
-
-
70349312354
-
ChIP-seq: Advantages and challenges of a maturing technology
-
Park, P.J. (2009) ChIP-seq: advantages and challenges of a maturing technology. Nat. Rev. Genet., 10, 669-680.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 669-680
-
-
Park, P.J.1
-
12
-
-
60149091656
-
ChIP-seq accurately predicts tissue-specific activity of enhancers
-
Visel, A., Blow, M.J., Li, Z.R., Zhang, T., Akiyama, J.A., Holt, A., Plajzer-Frick, I., Shoukry, M., Wright, C., Chen, F. et al. (2009) ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature, 457, 854-858.
-
(2009)
Nature
, vol.457
, pp. 854-858
-
-
Visel, A.1
Blow, M.J.2
Li, Z.R.3
Zhang, T.4
Akiyama, J.A.5
Holt, A.6
Plajzer-Frick, I.7
Shoukry, M.8
Wright, C.9
Chen, F.10
-
13
-
-
68949213578
-
Insights from genomic profiling of transcription factors
-
Farnham, P.J. (2009) Insights from genomic profiling of transcription factors. Nat. Rev. Genet., 10, 605-616.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 605-616
-
-
Farnham, P.J.1
-
14
-
-
84876566914
-
ChIPBase: A database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data
-
Yang, J.H., Li, J.H., Jiang, S., Zhou, H. and Qu, L.H. (2013) ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data. Nucleic Acids Res., 41, D177-D187.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D177-D187
-
-
Yang, J.H.1
Li, J.H.2
Jiang, S.3
Zhou, H.4
Qu, L.H.5
-
15
-
-
78651339534
-
NCBI GEO: Archive for functional genomics data sets-10 years on
-
Barrett, T., Troup, D.B., Wilhite, S.E., Ledoux, P., Evangelista, C., Kim, I.F., Tomashevsky, M., Marshall, K.A., Phillippy, K.H., Sherman, P.M. et al. (2011) NCBI GEO: archive for functional genomics data sets-10 years on. Nucleic Acids Res., 39, D1005-D1010.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D1005-D1010
-
-
Barrett, T.1
Troup, D.B.2
Wilhite, S.E.3
Ledoux, P.4
Evangelista, C.5
Kim, I.F.6
Tomashevsky, M.7
Marshall, K.A.8
Phillippy, K.H.9
Sherman, P.M.10
-
16
-
-
79955550445
-
A user's guide to the encyclopedia of DNA elements (ENCODE)
-
Myers, R.M., Stamatoyannopoulos, J., Snyder, M., Dunham, I., Hardison, R.C., Bernstein, B.E., Gingeras, T.R., Kent, W.J., Birney, E., Wold, B. et al. (2011) A user's guide to the encyclopedia of DNA elements (ENCODE). PLoS Biol., 9, e1001046.
-
(2011)
PLoS Biol.
, vol.9
, pp. e1001046
-
-
Myers, R.M.1
Stamatoyannopoulos, J.2
Snyder, M.3
Dunham, I.4
Hardison, R.C.5
Bernstein, B.E.6
Gingeras, T.R.7
Kent, W.J.8
Birney, E.9
Wold, B.10
-
17
-
-
79953046943
-
A cis-regulatory map of the Drosophila genome
-
Negre, N., Brown, C.D., Ma, L.J., Bristow, C.A., Miller, S.W., Wagner, U., Kheradpour, P., Eaton, M.L., Loriaux, P., Sealfon, R. et al. (2011) A cis-regulatory map of the Drosophila genome. Nature, 471, 527-531.
-
(2011)
Nature
, vol.471
, pp. 527-531
-
-
Negre, N.1
Brown, C.D.2
Ma, L.J.3
Bristow, C.A.4
Miller, S.W.5
Wagner, U.6
Kheradpour, P.7
Eaton, M.L.8
Loriaux, P.9
Sealfon, R.10
-
18
-
-
78650410139
-
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project
-
Gerstein, M.B., Lu, Z.J., Van Nostrand, E.L., Cheng, C., Arshinoff, B.I., Liu, T., Yip, K.Y., Robilotto, R., Rechtsteiner, A., Ikegami, K. et al. (2010) Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science, 330, 1775-1787.
-
(2010)
Science
, vol.330
, pp. 1775-1787
-
-
Gerstein, M.B.1
Lu, Z.J.2
Van Nostrand, E.L.3
Cheng, C.4
Arshinoff, B.I.5
Liu, T.6
Yip, K.Y.7
Robilotto, R.8
Rechtsteiner, A.9
Ikegami, K.10
-
19
-
-
77957940722
-
The NIH roadmap epigenomics mapping consortium
-
Bernstein, B.E., Stamatoyannopoulos, J.A., Costello, J.F., Ren, B., Milosavljevic, A., Meissner, A., Kellis, M., Marra, M.A., Beaudet, A.L., Ecker, J.R. et al. (2010) The NIH roadmap epigenomics mapping consortium. Nat. Biotechnol., 28, 1045-1048.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 1045-1048
-
-
Bernstein, B.E.1
Stamatoyannopoulos, J.A.2
Costello, J.F.3
Ren, B.4
Milosavljevic, A.5
Meissner, A.6
Kellis, M.7
Marra, M.A.8
Beaudet, A.L.9
Ecker, J.R.10
-
20
-
-
84976878634
-
The UCSC Genome Browser database: 2016 update
-
Speir, M.L., Zweig, A.S., Rosenbloom, K.R., Raney, B.J., Paten, B., Nejad, P., Lee, B.T., Learned, K., Karolchik, D., Hinrichs, A.S. et al. (2016) The UCSC Genome Browser database: 2016 update. Nucleic Acids Res., 44, D717-D725.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D717-D725
-
-
Speir, M.L.1
Zweig, A.S.2
Rosenbloom, K.R.3
Raney, B.J.4
Paten, B.5
Nejad, P.6
Lee, B.T.7
Learned, K.8
Karolchik, D.9
Hinrichs, A.S.10
-
21
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
Quinlan, A.R. and Hall, I.M. (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics, 26, 841-842.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
22
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
Heinz, S., Benner, C., Spann, N., Bertolino, E., Lin, Y.C., Laslo, P., Cheng, J.X., Murre, C., Singh, H. and Glass, C.K. (2010) Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell, 38, 576-589.
-
(2010)
Mol. Cell
, vol.38
, pp. 576-589
-
-
Heinz, S.1
Benner, C.2
Spann, N.3
Bertolino, E.4
Lin, Y.C.5
Laslo, P.6
Cheng, J.X.7
Murre, C.8
Singh, H.9
Glass, C.K.10
-
23
-
-
84865760395
-
GENCODE: The reference human genome annotation for the ENCODE Project
-
Harrow, J., Frankish, A., Gonzalez, J.M., Tapanari, E., Diekhans, M., Kokocinski, F., Aken, B.L., Barrell, D., Zadissa, A., Searle, S. et al. (2012) GENCODE: the reference human genome annotation for The ENCODE Project. Genome Res., 22, 1760-1774.
-
(2012)
Genome Res.
, vol.22
, pp. 1760-1774
-
-
Harrow, J.1
Frankish, A.2
Gonzalez, J.M.3
Tapanari, E.4
Diekhans, M.5
Kokocinski, F.6
Aken, B.L.7
Barrell, D.8
Zadissa, A.9
Searle, S.10
-
24
-
-
84976870685
-
Ensembl 2016
-
Yates, A., Akanni, W., Amode, M.R., Barrell, D., Billis, K., Carvalho-Silva, D., Cummins, C., Clapham, P., Fitzgerald, S., Gil, L. et al. (2016) Ensembl 2016. Nucleic Acids Res., 44, D710-D716.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D710-D716
-
-
Yates, A.1
Akanni, W.2
Amode, M.R.3
Barrell, D.4
Billis, K.5
Carvalho-Silva, D.6
Cummins, C.7
Clapham, P.8
Fitzgerald, S.9
Gil, L.10
-
25
-
-
84891818318
-
MiRBase: Annotating high confidence microRNAs using deep sequencing data
-
Kozomara, A. and Griffiths-Jones, S. (2014) miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res., 42, D68-D73.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D68-D73
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
26
-
-
84976909135
-
DeepBase v2.0: Identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data
-
Zheng, L.L., Li, J.H., Wu, J., Sun, W.J., Liu, S., Wang, Z.L., Zhou, H., Yang, J.H. and Qu, L.H. (2016) deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data. Nucleic Acids Res., 44, D196-D202.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D196-D202
-
-
Zheng, L.L.1
Li, J.H.2
Wu, J.3
Sun, W.J.4
Liu, S.5
Wang, Z.L.6
Zhou, H.7
Yang, J.H.8
Qu, L.H.9
-
27
-
-
84941121620
-
AnimalTFDB 2.0: A resource for expression, prediction and functional study of animal transcription factors
-
Zhang, H.M., Liu, T., Liu, C.J., Song, S.Y., Zhang, X.T., Liu, W., Jia, H.B., Xue, Y. and Guo, A.Y. (2015) AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors. Nucleic Acids Res., 43, D76-D81.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D76-D81
-
-
Zhang, H.M.1
Liu, T.2
Liu, C.J.3
Song, S.Y.4
Zhang, X.T.5
Liu, W.6
Jia, H.B.7
Xue, Y.8
Guo, A.Y.9
-
28
-
-
77952214662
-
GREAT improves functional interpretation of cis-regulatory regions
-
McLean, C.Y., Bristor, D., Hiller, M., Clarke, S.L., Schaar, B.T., Lowe, C.B., Wenger, A.M. and Bejerano, G. (2010) GREAT improves functional interpretation of cis-regulatory regions. Nat. Biotechnol., 28, 495-501.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 495-501
-
-
McLean, C.Y.1
Bristor, D.2
Hiller, M.3
Clarke, S.L.4
Schaar, B.T.5
Lowe, C.B.6
Wenger, A.M.7
Bejerano, G.8
-
29
-
-
84875156063
-
Enhancers: Five essential questions
-
Pennacchio, L.A., Bickmore, W., Dean, A., Nobrega, M.A. and Bejerano, G. (2013) Enhancers: five essential questions. Nat. Rev. Genet., 14, 288-295.
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 288-295
-
-
Pennacchio, L.A.1
Bickmore, W.2
Dean, A.3
Nobrega, M.A.4
Bejerano, G.5
-
30
-
-
33750352462
-
Transcriptional regulatory elements in the human genome
-
Maston, G.A., Evans, S.K. and Green, M.R. (2006) Transcriptional regulatory elements in the human genome. Annu. Rev. Genomics Hum. Genet., 7, 29-59.
-
(2006)
Annu. Rev. Genomics Hum. Genet.
, vol.7
, pp. 29-59
-
-
Maston, G.A.1
Evans, S.K.2
Green, M.R.3
-
31
-
-
65549104157
-
Histone modifications at human enhancers reflect global cell-type-specific gene expression
-
Heintzman, N.D., Hon, G.C., Hawkins, R.D., Kheradpour, P., Stark, A., Harp, L.F., Ye, Z., Lee, L.K., Stuart, R.K., Ching, C.W. et al. (2009) Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature, 459, 108-112.
-
(2009)
Nature
, vol.459
, pp. 108-112
-
-
Heintzman, N.D.1
Hon, G.C.2
Hawkins, R.D.3
Kheradpour, P.4
Stark, A.5
Harp, L.F.6
Ye, Z.7
Lee, L.K.8
Stuart, R.K.9
Ching, C.W.10
-
32
-
-
46249112085
-
Combinatorial patterns of histone acetylations and methylations in the human genome
-
Wang, Z.B., Zang, C.Z., Rosenfeld, J.A., Schones, D.E., Barski, A., Cuddapah, S., Cui, K.R., Roh, T.Y., Peng, W.Q., Zhang, M.Q. et al. (2008) Combinatorial patterns of histone acetylations and methylations in the human genome. Nat. Genet., 40, 897-903.
-
(2008)
Nat. Genet.
, vol.40
, pp. 897-903
-
-
Wang, Z.B.1
Zang, C.Z.2
Rosenfeld, J.A.3
Schones, D.E.4
Barski, A.5
Cuddapah, S.6
Cui, K.R.7
Roh, T.Y.8
Peng, W.Q.9
Zhang, M.Q.10
-
33
-
-
21744457108
-
Global histone modification patterns predict risk of prostate cancer recurrence
-
Seligson, D.B., Horvath, S., Shi, T., Yu, H., Tze, S., Grunstein, M. and Kurdistani, S.K. (2005) Global histone modification patterns predict risk of prostate cancer recurrence. Nature, 435, 1262-1266.
-
(2005)
Nature
, vol.435
, pp. 1262-1266
-
-
Seligson, D.B.1
Horvath, S.2
Shi, T.3
Yu, H.4
Tze, S.5
Grunstein, M.6
Kurdistani, S.K.7
-
34
-
-
34250307630
-
The landscape of histone modifications across 1% of the human genome in five human cell lines
-
Koch, C.M., Andrews, R.M., Flicek, P., Dillon, S.C., Karaoz, U., Clelland, G.K., Wilcox, S., Beare, D.M., Fowler, J.C., Couttet, P. et al. (2007) The landscape of histone modifications across 1% of the human genome in five human cell lines. Genome Res., 17, 691-707.
-
(2007)
Genome Res.
, vol.17
, pp. 691-707
-
-
Koch, C.M.1
Andrews, R.M.2
Flicek, P.3
Dillon, S.C.4
Karaoz, U.5
Clelland, G.K.6
Wilcox, S.7
Beare, D.M.8
Fowler, J.C.9
Couttet, P.10
-
35
-
-
84976878197
-
Expression Atlas update-an integrated database of gene and protein expression in humans, animals and plants
-
Petryszak, R., Keays, M., Tang, Y.A., Fonseca, N.A., Barrera, E., Burdett, T., Fullgrabe, A., Fuentes, A.M.P., Jupp, S., Koskinen, S. et al. (2016) Expression Atlas update-an integrated database of gene and protein expression in humans, animals and plants. Nucleic Acids Res., 44, D746-D752.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D746-D752
-
-
Petryszak, R.1
Keays, M.2
Tang, Y.A.3
Fonseca, N.A.4
Barrera, E.5
Burdett, T.6
Fullgrabe, A.7
Fuentes, A.M.P.8
Jupp, S.9
Koskinen, S.10
-
36
-
-
84884994218
-
The Cancer Genome Atlas Pan-Cancer analysis project
-
The Cancer Genome Atlas Research, N.
-
The Cancer Genome Atlas Research, N., Weinstein, J.N., Collisson, E.A., Mills, G.B., Shaw, K.R.M., Ozenberger, B.A., Ellrott, K., Shmulevich, I., Sander, C. and Stuart, J.M. (2013) The Cancer Genome Atlas Pan-Cancer analysis project. Nat. Genet., 45, 1113-1120.
-
(2013)
Nat. Genet.
, vol.45
, pp. 1113-1120
-
-
Weinstein, J.N.1
Collisson, E.A.2
Mills, G.B.3
Shaw, K.R.M.4
Ozenberger, B.A.5
Ellrott, K.6
Shmulevich, I.7
Sander, C.8
Stuart, J.M.9
-
37
-
-
84878682420
-
The Genotype-Tissue Expression (GTEx) project
-
Lonsdale, J., Thomas, J., Salvatore, M., Phillips, R., Lo, E., Shad, S., Hasz, R., Walters, G., Garcia, F., Young, N. et al. (2013) The Genotype-Tissue Expression (GTEx) project. Nat. Genet., 45, 580-585.
-
(2013)
Nat. Genet.
, vol.45
, pp. 580-585
-
-
Lonsdale, J.1
Thomas, J.2
Salvatore, M.3
Phillips, R.4
Lo, E.5
Shad, S.6
Hasz, R.7
Walters, G.8
Garcia, F.9
Young, N.10
-
38
-
-
69749083447
-
JBrowse: A next-generation genome browser
-
Skinner, M.E., Uzilov, A.V., Stein, L.D., Mungall, C.J. and Holmes, I.H. (2009) JBrowse: a next-generation genome browser. Genome Res., 19, 1630-1638.
-
(2009)
Genome Res.
, vol.19
, pp. 1630-1638
-
-
Skinner, M.E.1
Uzilov, A.V.2
Stein, L.D.3
Mungall, C.J.4
Holmes, I.H.5
-
39
-
-
84872540994
-
DNA-binding specificities of human transcription factors
-
Jolma, A., Yan, J., Whitington, T., Toivonen, J., Nitta, K.R., Rastas, P., Morgunova, E., Enge, M., Taipale, M., Wei, G. et al. (2013) DNA-binding specificities of human transcription factors. Cell, 152, 327-339.
-
(2013)
Cell
, vol.152
, pp. 327-339
-
-
Jolma, A.1
Yan, J.2
Whitington, T.3
Toivonen, J.4
Nitta, K.R.5
Rastas, P.6
Morgunova, E.7
Enge, M.8
Taipale, M.9
Wei, G.10
-
40
-
-
84865856641
-
Sequence and chromatin determinants of cell-type-specific transcription factor binding
-
Arvey, A., Agius, P., Noble, W.S. and Leslie, C. (2012) Sequence and chromatin determinants of cell-type-specific transcription factor binding. Genome Res., 22, 1723-1734.
-
(2012)
Genome Res.
, vol.22
, pp. 1723-1734
-
-
Arvey, A.1
Agius, P.2
Noble, W.S.3
Leslie, C.4
-
41
-
-
84865249952
-
Transcription factors: From enhancer binding to developmental control
-
Spitz, F. and Furlong, E.E. (2012) Transcription factors: from enhancer binding to developmental control. Nat. Rev. Genet., 13, 613-626.
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 613-626
-
-
Spitz, F.1
Furlong, E.E.2
-
42
-
-
45749135780
-
Inducible expression of microRNA-194 is regulated by HNF-1 alpha during intestinal epithelial cell differentiation
-
Hino, K., Tsuchiya, K., Fukao, T., Kiga, K., Okamoto, R., Kanai, T. and Watanabe, M. (2008) Inducible expression of microRNA-194 is regulated by HNF-1 alpha during intestinal epithelial cell differentiation. RNA, 14, 1433-1442.
-
(2008)
RNA
, vol.14
, pp. 1433-1442
-
-
Hino, K.1
Tsuchiya, K.2
Fukao, T.3
Kiga, K.4
Okamoto, R.5
Kanai, T.6
Watanabe, M.7
-
43
-
-
84859462370
-
Transforming growth factor beta 1 represses proximal tubular cell microRNA-192 expression through decreased hepatocyte nuclear factor DNA binding
-
Jenkins, R.H., Martin, J., Phillips, A.O., Bowen, T. and Fraser, D.J. (2012) Transforming growth factor beta 1 represses proximal tubular cell microRNA-192 expression through decreased hepatocyte nuclear factor DNA binding. Biochem. J., 443, 407-416.
-
(2012)
Biochem. J.
, vol.443
, pp. 407-416
-
-
Jenkins, R.H.1
Martin, J.2
Phillips, A.O.3
Bowen, T.4
Fraser, D.J.5
-
44
-
-
84876311383
-
Long noncoding RNA CCAT1, which could be activated by c-Myc, promotes the progression of gastric carcinoma
-
Yang, F., Xue, X.C., Bi, J.W., Zheng, L.M., Zhi, K.K., Gu, Y. and Fang, G.E. (2013) Long noncoding RNA CCAT1, which could be activated by c-Myc, promotes the progression of gastric carcinoma. J. Cancer Res. Clin., 139, 437-445.
-
(2013)
J. Cancer Res. Clin.
, vol.139
, pp. 437-445
-
-
Yang, F.1
Xue, X.C.2
Bi, J.W.3
Zheng, L.M.4
Zhi, K.K.5
Gu, Y.6
Fang, G.E.7
-
45
-
-
84925283122
-
C-Myc-activated long noncoding RNA CCAT1 promotes colon cancer cell proliferation and invasion
-
He, X.L., Tan, X.M., Wang, X., Jin, H.Y., Liu, L., Ma, L.M., Yu, H. and Fan, Z.N. (2014) C-Myc-activated long noncoding RNA CCAT1 promotes colon cancer cell proliferation and invasion. Tumor Biol., 35, 12181-12188.
-
(2014)
Tumor Biol.
, vol.35
, pp. 12181-12188
-
-
He, X.L.1
Tan, X.M.2
Wang, X.3
Jin, H.Y.4
Liu, L.5
Ma, L.M.6
Yu, H.7
Fan, Z.N.8
-
46
-
-
84856351646
-
Colon cancer associated transcript-1: A novel RNA expressed in malignant and pre-malignant human tissues
-
Nissan, A., Stojadinovic, A., Mitrani-Rosenbaum, S., Halle, D., Grinbaum, R., Roistacher, M., Bochem, A., Dayanc, B.E., Ritter, G., Gomceli, I. et al. (2012) Colon cancer associated transcript-1: a novel RNA expressed in malignant and pre-malignant human tissues. Int. J. Cancer, 130, 1598-1606.
-
(2012)
Int. J. Cancer
, vol.130
, pp. 1598-1606
-
-
Nissan, A.1
Stojadinovic, A.2
Mitrani-Rosenbaum, S.3
Halle, D.4
Grinbaum, R.5
Roistacher, M.6
Bochem, A.7
Dayanc, B.E.8
Ritter, G.9
Gomceli, I.10
-
47
-
-
33845969545
-
Identification of a Ctcf cofactor, Yy1, for the X chromosome binary switch
-
Donohoe, M.E., Zhang, L.F., Xu, N., Shi, Y. and Lee, J.T. (2007) Identification of a Ctcf cofactor, Yy1, for the X chromosome binary switch. Mol. Cell, 25, 43-56.
-
(2007)
Mol. Cell
, vol.25
, pp. 43-56
-
-
Donohoe, M.E.1
Zhang, L.F.2
Xu, N.3
Shi, Y.4
Lee, J.T.5
-
48
-
-
84857864826
-
YY1 associates with the macrosatellite DXZ4 on the inactive X chromosome and binds with CTCF to a hypomethylated form in some male carcinomas
-
Moseley, S.C., Rizkallah, R., Tremblay, D.C., Anderson, B.R., Hurt, M.M. and Chadwick, B.P. (2012) YY1 associates with the macrosatellite DXZ4 on the inactive X chromosome and binds with CTCF to a hypomethylated form in some male carcinomas. Nucleic Acids Res., 40, 1596-1608.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 1596-1608
-
-
Moseley, S.C.1
Rizkallah, R.2
Tremblay, D.C.3
Anderson, B.R.4
Hurt, M.M.5
Chadwick, B.P.6
-
49
-
-
0026072263
-
YY1 is an initiator sequence-binding protein that directs and activates transcription in vitro
-
Seto, E., Shi, Y. and Shenk, T. (1991) YY1 is an initiator sequence-binding protein that directs and activates transcription in vitro. Nature, 354, 241-245.
-
(1991)
Nature
, vol.354
, pp. 241-245
-
-
Seto, E.1
Shi, Y.2
Shenk, T.3
-
50
-
-
0028223852
-
TATA-binding protein-independent initiation: YY1, TFIIB, and RNA polymerase II direct basal transcription on supercoiled template DNA
-
Usheva, A. and Shenk, T. (1994) TATA-binding protein-independent initiation: YY1, TFIIB, and RNA polymerase II direct basal transcription on supercoiled template DNA. Cell, 76, 1115-1121.
-
(1994)
Cell
, vol.76
, pp. 1115-1121
-
-
Usheva, A.1
Shenk, T.2
-
51
-
-
75549092303
-
TransmiR: A transcription factor-microRNA regulation database
-
Wang, J., Lu, M., Qiu, C.X. and Cui, Q.H. (2010) TransmiR: a transcription factor-microRNA regulation database. Nucleic Acids Res., 38, D119-D122.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. D119-D122
-
-
Wang, J.1
Lu, M.2
Qiu, C.X.3
Cui, Q.H.4
-
52
-
-
77956520986
-
CircuitsDB: A database of mixed microRNA/transcription factor feed-forward regulatory circuits in human and mouse
-
Friard, O., Re, A., Taverna, D., De Bortoli, M. and Cora, D. (2010) CircuitsDB: a database of mixed microRNA/transcription factor feed-forward regulatory circuits in human and mouse. BMC Bioinformatics, 11, 435.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 435
-
-
Friard, O.1
Re, A.2
Taverna, D.3
De Bortoli, M.4
Cora, D.5
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