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Volumn 25, Issue 14, 2016, Pages 3125-3141

Genome-wide interrogation reveals hundreds of long intergenic noncoding RNAs that associate with cardiometabolic traits

Author keywords

[No Author keywords available]

Indexed keywords

LONG UNTRANSLATED RNA;

EID: 85016100490     PISSN: 09646906     EISSN: 14602083     Source Type: Journal    
DOI: 10.1093/hmg/ddw154     Document Type: Article
Times cited : (33)

References (72)
  • 2
    • 77952557918 scopus 로고    scopus 로고
    • Missing heritability and strategies for finding the underlying causes of complex disease
    • Eichler, E.E., Flint, J., Gibson, G., Kong, A., Leal, S.M., Moore, J.H. and Nadeau, J.H. (2010) Missing heritability and strategies for finding the underlying causes of complex disease. Nat. Rev. Genet., 11, 446-450.
    • (2010) Nat. Rev. Genet , vol.11 , pp. 446-450
    • Eichler, E.E.1    Flint, J.2    Gibson, G.3    Kong, A.4    Leal, S.M.5    Moore, J.H.6    Nadeau, J.H.7
  • 5
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • Consortium, E.P. (2012) An integrated encyclopedia of DNA elements in the human genome. Nature, 489, 57-74.
    • (2012) Nature , vol.489 , pp. 57-74
    • Consortium, E.P.1
  • 6
    • 84879987789 scopus 로고    scopus 로고
    • lincRNAs: genomics, evolution, and mechanisms
    • Ulitsky, I. and Bartel, D.P. (2013) lincRNAs: genomics, evolution, and mechanisms. Cell, 154, 26-46.
    • (2013) Cell , vol.154 , pp. 26-46
    • Ulitsky, I.1    Bartel, D.P.2
  • 7
    • 84922984420 scopus 로고    scopus 로고
    • Unexpected selection to retain high GC content and splicing enhancers within exons of multiexonic lncRNA loci
    • Haerty, W. and Ponting, C.P. (2015) Unexpected selection to retain high GC content and splicing enhancers within exons of multiexonic lncRNA loci. RNA, 21, 333-346.
    • (2015) RNA , vol.21 , pp. 333-346
    • Haerty, W.1    Ponting, C.P.2
  • 13
    • 62549117314 scopus 로고    scopus 로고
    • An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles
    • Clemson, C.M., Hutchinson, J.N., Sara, S.A., Ensminger, A.W., Fox, A.H., Chess, A. and Lawrence, J.B. (2009) An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles. Mol. Cell, 33, 717-726.
    • (2009) Mol. Cell , vol.33 , pp. 717-726
    • Clemson, C.M.1    Hutchinson, J.N.2    Sara, S.A.3    Ensminger, A.W.4    Fox, A.H.5    Chess, A.6    Lawrence, J.B.7
  • 17
    • 84901608759 scopus 로고    scopus 로고
    • LincSNP: a database of linking diseaseassociated SNPs to human large intergenic non-coding RNAs
    • Ning, S., Zhao, Z., Ye, J., Wang, P., Zhi, H., Li, R., Wang, T. and Li, X. (2014) LincSNP: a database of linking diseaseassociated SNPs to human large intergenic non-coding RNAs. BMC Bioinformatics, 15, 152.
    • (2014) BMC Bioinformatics , vol.15 , pp. 152
    • Ning, S.1    Zhao, Z.2    Ye, J.3    Wang, P.4    Zhi, H.5    Li, R.6    Wang, T.7    Li, X.8
  • 18
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • Cabili, M.N., Trapnell, C., Goff, L., Koziol, M., Tazon-Vega, B., Regev, A. and Rinn, J.L. (2011) Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev, 25, 1915-1927.
    • (2011) Genes Dev , vol.25 , pp. 1915-1927
    • Cabili, M.N.1    Trapnell, C.2    Goff, L.3    Koziol, M.4    Tazon-Vega, B.5    Regev, A.6    Rinn, J.L.7
  • 20
    • 84879671055 scopus 로고    scopus 로고
    • Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs
    • Hangauer, M.J., Vaughn, I.W. and McManus, M.T. (2013) Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs. PLoS Genet., 9, e1003569.
    • (2013) PLoS Genet , vol.9
    • Hangauer, M.J.1    Vaughn, I.W.2    McManus, M.T.3
  • 22
    • 0344429906 scopus 로고    scopus 로고
    • MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage nonsmall cell lung cancer
    • Ji, P., Diederichs, S., Wang, W., Boing, S., Metzger, R., Schneider, P.M., Tidow, N., Brandt, B., Buerger, H., Bulk, E. et al. (2003) MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage nonsmall cell lung cancer. Oncogene, 22, 8031-8041.
    • (2003) Oncogene , vol.22 , pp. 8031-8041
    • Ji, P.1    Diederichs, S.2    Wang, W.3    Boing, S.4    Metzger, R.5    Schneider, P.M.6    Tidow, N.7    Brandt, B.8    Buerger, H.9    Bulk, E.10
  • 23
    • 33847185603 scopus 로고    scopus 로고
    • A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains
    • Hutchinson, J.N., Ensminger, A.W., Clemson, C.M., Lynch, C.R., Lawrence, J.B. and Chess, A. (2007) A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains. BMC Genomics, 8, 39.
    • (2007) BMC Genomics , vol.8 , pp. 39
    • Hutchinson, J.N.1    Ensminger, A.W.2    Clemson, C.M.3    Lynch, C.R.4    Lawrence, J.B.5    Chess, A.6
  • 25
  • 31
    • 77952363272 scopus 로고    scopus 로고
    • Chromosome 9p21 SNPs Associated with Multiple Disease Phenotypes Correlate with ANRIL Expression
    • Cunnington, M.S., Santibanez Koref, M., Mayosi, B.M., Burn, J. and Keavney, B. (2010) Chromosome 9p21 SNPs Associated with Multiple Disease Phenotypes Correlate with ANRIL Expression. PLoS Genet., 6, e1000899.
    • (2010) PLoS Genet , vol.6
    • Cunnington, M.S.1    Santibanez Koref, M.2    Mayosi, B.M.3    Burn, J.4    Keavney, B.5
  • 35
    • 84929705123 scopus 로고    scopus 로고
    • Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species
    • Hezroni, H., Koppstein, D., Schwartz, M.G., Avrutin, A., Bartel, D.P. and Ulitsky, I. (2015) Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species. Cell Rep., 11, 1110-1122.
    • (2015) Cell Rep , vol.11 , pp. 1110-1122
    • Hezroni, H.1    Koppstein, D.2    Schwartz, M.G.3    Avrutin, A.4    Bartel, D.P.5    Ulitsky, I.6
  • 41
    • 84883736533 scopus 로고    scopus 로고
    • CCAT2, a novel noncoding RNA mapping to 8q24, underlies metastatic progression and chromosomal instability in colon cancer
    • Ling, H., Spizzo, R., Atlasi, Y., Nicoloso, M., Shimizu, M., Redis, R.S., Nishida, N., Gafa, R., Song, J., Guo, Z. et al. (2013) CCAT2, a novel noncoding RNA mapping to 8q24, underlies metastatic progression and chromosomal instability in colon cancer. Genome Res., 23, 1446-1461.
    • (2013) Genome Res , vol.23 , pp. 1446-1461
    • Ling, H.1    Spizzo, R.2    Atlasi, Y.3    Nicoloso, M.4    Shimizu, M.5    Redis, R.S.6    Nishida, N.7    Gafa, R.8    Song, J.9    Guo, Z.10
  • 43
    • 36849011549 scopus 로고    scopus 로고
    • Studies of association of variants near the HHEX, CDKN2A/B, and IGF2BP2 genes with type 2 diabetes and impaired insulin release in 10, 705 Danish subjects: validation and extension of genome-wide association studies
    • Grarup, N., Rose, C.S., Andersson, E.A., Andersen, G., Nielsen, A.L., Albrechtsen, A., Clausen, J.O., Rasmussen, S.S., Jorgensen, T., Sandbaek, A. et al. (2007) Studies of association of variants near the HHEX, CDKN2A/B, and IGF2BP2 genes with type 2 diabetes and impaired insulin release in 10, 705 Danish subjects: validation and extension of genome-wide association studies. Diabetes, 56, 3105-3111.
    • (2007) Diabetes , vol.56 , pp. 3105-3111
    • Grarup, N.1    Rose, C.S.2    Andersson, E.A.3    Andersen, G.4    Nielsen, A.L.5    Albrechtsen, A.6    Clausen, J.O.7    Rasmussen, S.S.8    Jorgensen, T.9    Sandbaek, A.10
  • 47
  • 48
    • 84886724189 scopus 로고    scopus 로고
    • Expression and regulation of intergenic long noncoding RNAs during T cell development and differentiation
    • Hu, G., Tang, Q., Sharma, S., Yu, F., Escobar, T.M., Muljo, S.A., Zhu, J. and Zhao, K. (2013) Expression and regulation of intergenic long noncoding RNAs during T cell development and differentiation. Nat. Immunol, 14, 1190-1198.
    • (2013) Nat. Immunol , vol.14 , pp. 1190-1198
    • Hu, G.1    Tang, Q.2    Sharma, S.3    Yu, F.4    Escobar, T.M.5    Muljo, S.A.6    Zhu, J.7    Zhao, K.8
  • 49
    • 84899486799 scopus 로고    scopus 로고
    • The STAT3-binding long noncoding RNA lnc-DC controls human dendritic cell differentiation
    • Wang, P., Xue, Y., Han, Y., Lin, L., Wu, C., Xu, S., Jiang, Z., Xu, J., Liu, Q. and Cao, X. (2014) The STAT3-binding long noncoding RNA lnc-DC controls human dendritic cell differentiation. Science, 344, 310-313.
    • (2014) Science , vol.344 , pp. 310-313
    • Wang, P.1    Xue, Y.2    Han, Y.3    Lin, L.4    Wu, C.5    Xu, S.6    Jiang, Z.7    Xu, J.8    Liu, Q.9    Cao, X.10
  • 55
    • 84946725147 scopus 로고    scopus 로고
    • Long Noncoding RNA ADINR Regulates Adipogenesis by Transcriptionally Activating C/EBPalpha
    • Xiao, T., Liu, L., Li, H., Sun, Y., Luo, H., Li, T., Wang, S., Dalton, S., Zhao, R.C. and Chen, R. (2015) Long Noncoding RNA ADINR Regulates Adipogenesis by Transcriptionally Activating C/EBPalpha. Stem Cell Rep., 5, 856-865.
    • (2015) Stem Cell Rep , vol.5 , pp. 856-865
    • Xiao, T.1    Liu, L.2    Li, H.3    Sun, Y.4    Luo, H.5    Li, T.6    Wang, S.7    Dalton, S.8    Zhao, R.C.9    Chen, R.10
  • 56
    • 84905499238 scopus 로고    scopus 로고
    • A long noncoding RNA transcriptional regulatory circuit drives thermogenic adipocyte differentiation
    • Zhao, X.Y., Li, S., Wang, G.X., Yu, Q. and Lin, J.D. (2014) A long noncoding RNA transcriptional regulatory circuit drives thermogenic adipocyte differentiation. Mol. Cell, 55, 372-382.
    • (2014) Mol. Cell , vol.55 , pp. 372-382
    • Zhao, X.Y.1    Li, S.2    Wang, G.X.3    Yu, Q.4    Lin, J.D.5
  • 57
    • 84928192649 scopus 로고    scopus 로고
    • De Novo Reconstruction of Adipose Tissue Transcriptomes Reveals Long Non-coding RNA Regulators of Brown Adipocyte Development
    • Alvarez-Dominguez, J.R., Bai, Z., Xu, D., Yuan, B., Lo, K.A., Yoon, M.J., Lim, Y.C., Knoll, M., Slavov, N., Chen, S. et al. (2015) De Novo Reconstruction of Adipose Tissue Transcriptomes Reveals Long Non-coding RNA Regulators of Brown Adipocyte Development. Cell Metab., 21, 764-776.
    • (2015) Cell Metab , vol.21 , pp. 764-776
    • Alvarez-Dominguez, J.R.1    Bai, Z.2    Xu, D.3    Yuan, B.4    Lo, K.A.5    Yoon, M.J.6    Lim, Y.C.7    Knoll, M.8    Slavov, N.9    Chen, S.10
  • 58
    • 84869052718 scopus 로고    scopus 로고
    • Cis-acting noncoding RNAs: friends and foes
    • Guil, S. and Esteller, M. (2012) Cis-acting noncoding RNAs: friends and foes. Nat. Struct. Mol. Biol., 19, 1068-1075.
    • (2012) Nat. Struct. Mol. Biol , vol.19 , pp. 1068-1075
    • Guil, S.1    Esteller, M.2
  • 60
    • 84959423145 scopus 로고    scopus 로고
    • A Simple Test of Class-Level Genetic Association Can Reveal Novel Cardiometabolic Trait Loci
    • Qian, J., Nunez, S., Reed, E., Reilly, M.P. and Foulkes, A.S. (2016) A Simple Test of Class-Level Genetic Association Can Reveal Novel Cardiometabolic Trait Loci. PLoS One, 11, e0148218.
    • (2016) PLoS One , vol.11
    • Qian, J.1    Nunez, S.2    Reed, E.3    Reilly, M.P.4    Foulkes, A.S.5
  • 67
    • 79251619566 scopus 로고    scopus 로고
    • Identification of ADAMTS7 as a novel locus for coronary atherosclerosis and association of ABO with myocardial infarction in the presence of coronary atherosclerosis: two genome-wide association studies
    • Reilly, M.P., Li, M., He, J., Ferguson, J.F., Stylianou, I.M., Mehta, N.N., Burnett, M.S., Devaney, J.M., Knouff, C.W., Thompson, J.R. et al. (2011) Identification of ADAMTS7 as a novel locus for coronary atherosclerosis and association of ABO with myocardial infarction in the presence of coronary atherosclerosis: two genome-wide association studies. Lancet, 377, 383-392.
    • (2011) Lancet , vol.377 , pp. 383-392
    • Reilly, M.P.1    Li, M.2    He, J.3    Ferguson, J.F.4    Stylianou, I.M.5    Mehta, N.N.6    Burnett, M.S.7    Devaney, J.M.8    Knouff, C.W.9    Thompson, J.R.10
  • 68
    • 67349163739 scopus 로고    scopus 로고
    • The Pakistan Risk of Myocardial Infarction Study: a resource for the study of genetic, lifestyle and other determinants of myocardial infarction in South Asia
    • Saleheen, D., Zaidi, M., Rasheed, A., Ahmad, U., Hakeem, A., Murtaza, M., Kayani, W., Faruqui, A., Kundi, A., Zaman, K.S. et al. (2009) The Pakistan Risk of Myocardial Infarction Study: a resource for the study of genetic, lifestyle and other determinants of myocardial infarction in South Asia. Eur. J. Epidemiol., 24, 329-338.
    • (2009) Eur. J. Epidemiol , vol.24 , pp. 329-338
    • Saleheen, D.1    Zaidi, M.2    Rasheed, A.3    Ahmad, U.4    Hakeem, A.5    Murtaza, M.6    Kayani, W.7    Faruqui, A.8    Kundi, A.9    Zaman, K.S.10
  • 71
    • 84455206362 scopus 로고    scopus 로고
    • Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution
    • Ulitsky, I., Shkumatava, A., Jan, C.H., Sive, H. and Bartel, D.P. (2011) Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. Cell, 147, 1537-1550.
    • (2011) Cell , vol.147 , pp. 1537-1550
    • Ulitsky, I.1    Shkumatava, A.2    Jan, C.H.3    Sive, H.4    Bartel, D.P.5


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