-
1
-
-
84912566327
-
Cryo-EM enters a new era
-
Kühlbrandt W (2014) Cryo-EM enters a new era. eLife 3:e03678.
-
(2014)
ELife
, vol.3
, pp. e03678
-
-
Kühlbrandt, W.1
-
2
-
-
84939268956
-
Overview and future of single particle electron cryomicroscopy
-
Henderson R (2015) Overview and future of single particle electron cryomicroscopy. Arch Biochem Biophys 581:19-24.
-
(2015)
Arch Biochem Biophys
, vol.581
, pp. 19-24
-
-
Henderson, R.1
-
3
-
-
84880607763
-
High-resolution noise substitution to measure overfitting and validate resolution in 3D structure determination by single particle electron cryomicroscopy
-
Chen S, et al. (2013) High-resolution noise substitution to measure overfitting and validate resolution in 3D structure determination by single particle electron cryomicroscopy. Ultramicroscopy 135:24-35.
-
(2013)
Ultramicroscopy
, vol.135
, pp. 24-35
-
-
Chen, S.1
-
4
-
-
84919444103
-
An atomic model of brome mosaic virus using direct electron detection and real-space optimization
-
Wang Z, et al. (2014) An atomic model of brome mosaic virus using direct electron detection and real-space optimization. Nat Commun 5:4808.
-
(2014)
Nat Commun
, vol.5
, pp. 4808
-
-
Wang, Z.1
-
5
-
-
0017319054
-
Structure and assembly of the capsid of bacteriophage P22
-
King J, et al. (1976) Structure and assembly of the capsid of bacteriophage P22. Philos Trans R Soc Lond B Biol Sci 276(943):37-49.
-
(1976)
Philos Trans R Soc Lond B Biol Sci
, vol.276
, Issue.943
, pp. 37-49
-
-
King, J.1
-
6
-
-
0027210999
-
Temperature-sensitive mutations in the phage P22 coat protein which interfere with polypeptide chain folding
-
Gordon CL, King J (1993) Temperature-sensitive mutations in the phage P22 coat protein which interfere with polypeptide chain folding. J Biol Chem 268(13): 9358-9368.
-
(1993)
J Biol Chem
, vol.268
, Issue.13
, pp. 9358-9368
-
-
Gordon, C.L.1
King, J.2
-
7
-
-
0028997655
-
In vitro folding of phage P22 coat protein with amino acid substitutions that confer in vivo temperature sensitivity
-
Teschke CM, King J (1995) In vitro folding of phage P22 coat protein with amino acid substitutions that confer in vivo temperature sensitivity. Biochemistry 34(20): 6815-6826.
-
(1995)
Biochemistry
, vol.34
, Issue.20
, pp. 6815-6826
-
-
Teschke, C.M.1
King, J.2
-
8
-
-
0002608842
-
The procapsid-to-capsid transition in double-stranded DNA bacteriophages
-
eds Chiu W, Burnett RM, Garcea RL (Oxford Univ Press, New York)
-
King J, Chiu W (1997) The procapsid-to-capsid transition in double-stranded DNA bacteriophages. Structural Biology of Viruses, eds Chiu W, Burnett RM, Garcea RL (Oxford Univ Press, New York), pp 288-311.
-
(1997)
Structural Biology of Viruses
, pp. 288-311
-
-
King, J.1
Chiu, W.2
-
9
-
-
0034703226
-
Topologically linked protein rings in the bacteriophage HK97 capsid
-
Wikoff WR, et al. (2000) Topologically linked protein rings in the bacteriophage HK97 capsid. Science 289(5487):2129-2133.
-
(2000)
Science
, vol.289
, Issue.5487
, pp. 2129-2133
-
-
Wikoff, W.R.1
-
10
-
-
0344010492
-
The refined structure of a protein catenane: The HK97 bacteriophage capsid at 3.44 Å resolution
-
Helgstrand C, et al. (2003) The refined structure of a protein catenane: The HK97 bacteriophage capsid at 3.44 Å resolution. J Mol Biol 334(5):885-899.
-
(2003)
J Mol Biol
, vol.334
, Issue.5
, pp. 885-899
-
-
Helgstrand, C.1
-
11
-
-
79952163890
-
Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus
-
Chen DH, et al. (2011) Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus. Proc Natl Acad Sci USA 108(4):1355-1360.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.4
, pp. 1355-1360
-
-
Chen, D.H.1
-
12
-
-
84902328524
-
Multiple functional roles of the accessory I-domain of bacteriophage P22 coat protein revealed by NMR structure and cryoEM modeling
-
Rizzo AA, et al. (2014) Multiple functional roles of the accessory I-domain of bacteriophage P22 coat protein revealed by NMR structure and cryoEM modeling. Structure 22(6):830-841.
-
(2014)
Structure
, vol.22
, Issue.6
, pp. 830-841
-
-
Rizzo, A.A.1
-
13
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen VB, et al. (2010) MolProbity: All-atom structure validation for macromolecular crystallography. Acta Crystallogr D Biol Crystallogr 66(Pt 1):12-21.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
-
14
-
-
84959080555
-
EMRinger: Side chain-directed model and map validation for 3D cryo-electron microscopy
-
Barad BA, et al. (2015) EMRinger: Side chain-directed model and map validation for 3D cryo-electron microscopy. Nat Methods 12(10):943-946.
-
(2015)
Nat Methods
, vol.12
, Issue.10
, pp. 943-946
-
-
Barad, B.A.1
-
15
-
-
0033605231
-
The structure of bacteriorhodopsin at 3.0 Å resolution based on electron crystallography: Implication of the charge distribution
-
Mitsuoka K, et al. (1999) The structure of bacteriorhodopsin at 3.0 Å resolution based on electron crystallography: Implication of the charge distribution. J Mol Biol 286(3): 861-882.
-
(1999)
J Mol Biol
, vol.286
, Issue.3
, pp. 861-882
-
-
Mitsuoka, K.1
-
16
-
-
84905974179
-
Structure of β-galactosidase at 3.2-Å resolution obtained by cryo-electron microscopy
-
Bartesaghi A, Matthies D, Banerjee S, Merk A, Subramaniam S (2014) Structure of β-galactosidase at 3.2-Å resolution obtained by cryo-electron microscopy. Proc Natl Acad Sci USA 111(32):11709-11714.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, Issue.32
, pp. 11709-11714
-
-
Bartesaghi, A.1
Matthies, D.2
Banerjee, S.3
Merk, A.4
Subramaniam, S.5
-
17
-
-
84925281992
-
Electron crystallography of ultrathin 3D protein crystals: Atomic model with charges
-
Yonekura K, Kato K, Ogasawara M, Tomita M, Toyoshima C (2015) Electron crystallography of ultrathin 3D protein crystals: Atomic model with charges. Proc Natl Acad Sci USA 112(11):3368-3373.
-
(2015)
Proc Natl Acad Sci USA
, vol.112
, Issue.11
, pp. 3368-3373
-
-
Yonekura, K.1
Kato, K.2
Ogasawara, M.3
Tomita, M.4
Toyoshima, C.5
-
18
-
-
0015106320
-
Limitations to significant information in biological electron microscopy as a result of radiation damage
-
Glaeser RM (1971) Limitations to significant information in biological electron microscopy as a result of radiation damage. J Ultrastruct Res 36(3):466-482.
-
(1971)
J Ultrastruct Res
, vol.36
, Issue.3
, pp. 466-482
-
-
Glaeser, R.M.1
-
19
-
-
0036107260
-
Modeling chemical bonding effects for protein electron crystallography: The transferable fragmental electrostatic potential (TFESP) method
-
Zhong S, Dadarlat VM, Glaeser RM, Head-Gordon T, Downing KH (2002) Modeling chemical bonding effects for protein electron crystallography: The transferable fragmental electrostatic potential (TFESP) method. Acta Crystallogr A 58(Pt 2):162-170.
-
(2002)
Acta Crystallogr A
, vol.58
, pp. 162-170
-
-
Zhong, S.1
Dadarlat, V.M.2
Glaeser, R.M.3
Head-Gordon, T.4
Downing, K.H.5
-
20
-
-
84870887665
-
Specificity of an anti-capsid antibody associated with hepatitis B virus-related acute liver failure
-
Wu W, et al. (2013) Specificity of an anti-capsid antibody associated with hepatitis B virus-related acute liver failure. J Struct Biol 181(1):53-60.
-
(2013)
J Struct Biol
, vol.181
, Issue.1
, pp. 53-60
-
-
Wu, W.1
-
21
-
-
84943582075
-
3D structural fluctuation of IgG1 antibody revealed by individual particle electron tomography
-
Zhang X, et al. (2015) 3D structural fluctuation of IgG1 antibody revealed by individual particle electron tomography. Sci Rep 5:9803.
-
(2015)
Sci Rep
, vol.5
, pp. 9803
-
-
Zhang, X.1
-
22
-
-
84954290403
-
2.9 Å resolution cryo-EM 3D reconstruction of close-packed virus particles
-
Liu Z, Guo F, Wang F, Li TC, Jiang W (2016) 2.9 Å resolution cryo-EM 3D reconstruction of close-packed virus particles. Structure 24(2):319-328.
-
(2016)
Structure
, vol.24
, Issue.2
, pp. 319-328
-
-
Liu, Z.1
Guo, F.2
Wang, F.3
Li, T.C.4
Jiang, W.5
-
23
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams PD, et al. (2010) PHENIX: A comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr 66(Pt 2):213-221.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
-
24
-
-
84860273177
-
Towards automated crystallographic structure refinement with phenix.refine
-
Afonine PV, et al. (2012) Towards automated crystallographic structure refinement with phenix.refine. Acta Crystallogr D Biol Crystallogr 68(Pt 4):352-367.
-
(2012)
Acta Crystallogr D Biol Crystallogr
, vol.68
, pp. 352-367
-
-
Afonine, P.V.1
-
25
-
-
84880659509
-
Validated near-atomic resolution structure of bacteriophage epsilon15 derived from cryo-EM and modeling
-
Baker ML, et al. (2013) Validated near-atomic resolution structure of bacteriophage epsilon15 derived from cryo-EM and modeling. Proc Natl Acad Sci USA 110(30): 12301-12306.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.30
, pp. 12301-12306
-
-
Baker, M.L.1
-
26
-
-
84908434273
-
Capsid expansion mechanism of bacteriophage T7 revealed by multistate atomic models derived from cryo-EM reconstructions
-
Guo F, et al. (2014) Capsid expansion mechanism of bacteriophage T7 revealed by multistate atomic models derived from cryo-EM reconstructions. Proc Natl Acad Sci USA 111(43):E4606-E4614.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, Issue.43
, pp. E4606-E4614
-
-
Guo, F.1
-
27
-
-
34548232365
-
Inference of macromolecular assemblies from crystalline state
-
Krissinel E, Henrick K (2007) Inference of macromolecular assemblies from crystalline state. J Mol Biol 372(3):774-797.
-
(2007)
J Mol Biol
, vol.372
, Issue.3
, pp. 774-797
-
-
Krissinel, E.1
Henrick, K.2
-
28
-
-
0030659457
-
PDBsum: A web-based database of summaries and analyses of all PDB structures
-
Laskowski RA, et al. (1997) PDBsum: A web-based database of summaries and analyses of all PDB structures. Trends Biochem Sci 22(12):488-490.
-
(1997)
Trends Biochem Sci
, vol.22
, Issue.12
, pp. 488-490
-
-
Laskowski, R.A.1
-
29
-
-
0037379808
-
Penton release from P22 heatexpanded capsids suggests importance of stabilizing penton-hexon interactions during capsid maturation
-
Teschke CM, McGough A, Thuman-Commike PA (2003) Penton release from P22 heatexpanded capsids suggests importance of stabilizing penton-hexon interactions during capsid maturation. Biophys J 84(4):2585-2592.
-
(2003)
Biophys J
, vol.84
, Issue.4
, pp. 2585-2592
-
-
Teschke, C.M.1
McGough, A.2
Thuman-Commike, P.A.3
-
30
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, et al. (2000) The Protein Data Bank. Nucleic Acids Res 28(1):235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, Issue.1
, pp. 235-242
-
-
Berman, H.M.1
-
31
-
-
84934443131
-
Single particle cryo-electron microscopy and 3-D reconstruction of viruses
-
Guo F, JiangW (2014) Single particle cryo-electron microscopy and 3-D reconstruction of viruses. Methods Mol Biol 1117:401-443.
-
(2014)
Methods Mol Biol
, vol.1117
, pp. 401-443
-
-
Guo, F.1
Jiang, W.2
-
32
-
-
84863011711
-
Outcome of the first Electron Microscopy Validation Task Force meeting
-
Henderson R, et al. (2012) Outcome of the first Electron Microscopy Validation Task Force meeting. Structure 20(2):205-214.
-
(2012)
Structure
, vol.20
, Issue.2
, pp. 205-214
-
-
Henderson, R.1
-
33
-
-
84866078359
-
Prevention of overfitting in cryo-EM structure determination
-
Scheres SH, Chen S (2012) Prevention of overfitting in cryo-EM structure determination. Nat Methods 9(9):853-854.
-
(2012)
Nat Methods
, vol.9
, Issue.9
, pp. 853-854
-
-
Scheres, S.H.1
Chen, S.2
-
34
-
-
4444221565
-
UCSF Chimera - A visualization system for exploratory research and analysis
-
Pettersen EF, et al. (2004) UCSF Chimera - A visualization system for exploratory research and analysis. J Comput Chem 25(13):1605-1612.
-
(2004)
J Comput Chem
, vol.25
, Issue.13
, pp. 1605-1612
-
-
Pettersen, E.F.1
-
36
-
-
33845332754
-
EMAN2: An extensible image processing suite for electron microscopy
-
Tang G, et al. (2007) EMAN2: An extensible image processing suite for electron microscopy. J Struct Biol 157(1):38-46.
-
(2007)
J Struct Biol
, vol.157
, Issue.1
, pp. 38-46
-
-
Tang, G.1
-
37
-
-
0038441501
-
Accurate determination of local defocus and specimen tilt in electron microscopy
-
Mindell JA, Grigorieff N (2003) Accurate determination of local defocus and specimen tilt in electron microscopy. J Struct Biol 142(3):334-347.
-
(2003)
J Struct Biol
, vol.142
, Issue.3
, pp. 334-347
-
-
Mindell, J.A.1
Grigorieff, N.2
-
38
-
-
0033787642
-
Local average intensity-based method for identifying spherical particles in electron micrographs
-
Kivioja T, Ravantti J, Verkhovsky A, Ukkonen E, Bamford D (2000) Local average intensity-based method for identifying spherical particles in electron micrographs. J Struct Biol 131(2):126-134.
-
(2000)
J Struct Biol
, vol.131
, Issue.2
, pp. 126-134
-
-
Kivioja, T.1
Ravantti, J.2
Verkhovsky, A.3
Ukkonen, E.4
Bamford, D.5
-
39
-
-
76749153367
-
Radiation damage effects at four specimen temperatures from 4 to 100 K
-
Bammes BE, Jakana J, Schmid MF, Chiu W (2010) Radiation damage effects at four specimen temperatures from 4 to 100 K. J Struct Biol 169(3):331-341.
-
(2010)
J Struct Biol
, vol.169
, Issue.3
, pp. 331-341
-
-
Bammes, B.E.1
Jakana, J.2
Schmid, M.F.3
Chiu, W.4
-
40
-
-
34548643898
-
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm
-
Liu X, Jiang W, Jakana J, Chiu W (2007) Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. J Struct Biol 160(1):11-27.
-
(2007)
J Struct Biol
, vol.160
, Issue.1
, pp. 11-27
-
-
Liu, X.1
Jiang, W.2
Jakana, J.3
Chiu, W.4
|