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Volumn 45, Issue D1, 2017, Pages D1040-D1045

PlantTFDB 4.0: Toward a central hub for transcription factors and regulatory interactions in plants

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR; PROTEIN BINDING;

EID: 85015685686     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkw982     Document Type: Article
Times cited : (1520)

References (38)
  • 1
    • 0034671865 scopus 로고    scopus 로고
    • Arabidopsis transcription factors: Genome-wide comparative analysis among eukaryotes
    • Riechmann,J.L., Heard,J., Martin,G. and Reuber,L. (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 290, 2105.
    • (2000) Science , vol.290 , pp. 2105
    • Riechmann, J.L.1    Heard, J.2    Martin, G.3    Reuber, L.4
  • 5
    • 42249096792 scopus 로고    scopus 로고
    • DATFAP: A database of primers and homology alignments for transcription factors from 13 plant species
    • Fredslund,J. (2008) DATFAP: a database of primers and homology alignments for transcription factors from 13 plant species. BMC Genomics, 9, 140.
    • (2008) BMC Genomics , vol.9 , pp. 140
    • Fredslund, J.1
  • 6
    • 84879170851 scopus 로고    scopus 로고
    • TreeTFDB: An integrative database of the transcription factors from six economically important tree crops for functional Predictions and comparative and functional genomics
    • Mochida,K., Yoshida,T., Sakurai,T., Yamaguchi-Shinozaki,K., Shinozaki,K. and Tran,L.-S.P. (2013) TreeTFDB: an integrative database of the transcription factors from six economically important tree crops for functional Predictions and comparative and functional genomics. DNA Res., 20, 151-162.
    • (2013) DNA Res. , vol.20 , pp. 151-162
    • Mochida, K.1    Yoshida, T.2    Sakurai, T.3    Yamaguchi-Shinozaki, K.4    Shinozaki, K.5    Tran, L.-S.P.6
  • 8
    • 77950465255 scopus 로고    scopus 로고
    • LegumeTFDB: An integrative database of Glycine max, Lotus japonicus and Medicago truncatula transcription factors
    • Mochida,K., Yoshida,T., Sakurai,T., Yamaguchi-Shinozaki,K., Shinozaki,K. and Tran,L.S. (2010) LegumeTFDB: an integrative database of Glycine max, Lotus japonicus and Medicago truncatula transcription factors. Bioinformatics, 26, 290-291.
    • (2010) Bioinformatics , vol.26 , pp. 290-291
    • Mochida, K.1    Yoshida, T.2    Sakurai, T.3    Yamaguchi-Shinozaki, K.4    Shinozaki, K.5    Tran, L.S.6
  • 10
    • 77952267071 scopus 로고    scopus 로고
    • WDBTF: An integrated database resource for studying wheat transcription factor families
    • Romeuf,I., Tessier,D., Dardevet,M., Branlard,G., Charmet,G. and Ravel,C. (2010) wDBTF: an integrated database resource for studying wheat transcription factor families. BMC Genomics, 11, 185.
    • (2010) BMC Genomics , vol.11 , pp. 185
    • Romeuf, I.1    Tessier, D.2    Dardevet, M.3    Branlard, G.4    Charmet, G.5    Ravel, C.6
  • 11
    • 19544382556 scopus 로고    scopus 로고
    • DATF: A database of Arabidopsis transcription factors
    • Guo,A., He,K., Liu,D., Bai,S., Gu,X., Wei,L. and Luo,J. (2005) DATF: a database of Arabidopsis transcription factors. Bioinformatics, 21, 2568.
    • (2005) Bioinformatics , vol.21 , pp. 2568
    • Guo, A.1    He, K.2    Liu, D.3    Bai, S.4    Gu, X.5    Wei, L.6    Luo, J.7
  • 15
    • 78651337578 scopus 로고    scopus 로고
    • PlantTFDB 2.0: Update and improvement of the comprehensive plant transcription factor database
    • Zhang,H., Jin,J., Tang,L., Zhao,Y., Gu,X., Gao,G. and Luo,J. (2011) PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database. Nucleic Acids Res., 39, D1114-D1117.
    • (2011) Nucleic Acids Res. , vol.39 , pp. D1114-D1117
    • Zhang, H.1    Jin, J.2    Tang, L.3    Zhao, Y.4    Gu, X.5    Gao, G.6    Luo, J.7
  • 16
    • 84891810676 scopus 로고    scopus 로고
    • PlantTFDB 3.0: A portal for the functional and evolutionary study of plant transcription factors
    • Jin,J., Zhang,H., Kong,L., Gao,G. and Luo,J. (2014) PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors. Nucleic Acids Res., 42, D1182-D1187.
    • (2014) Nucleic Acids Res. , vol.42 , pp. D1182-D1187
    • Jin, J.1    Zhang, H.2    Kong, L.3    Gao, G.4    Luo, J.5
  • 17
    • 85016145951 scopus 로고    scopus 로고
    • Classification, prediction and database construction of plant transcription factors
    • Jin,J., Guo,A., He,K., Zhang,H., Zhu,Q., Chen,X., Gao,G. and Luo,J. (2015) Classification, prediction and database construction of plant transcription factors. Biotechnol. Bull., 31, 68-77.
    • (2015) Biotechnol. Bull. , vol.31 , pp. 68-77
    • Jin, J.1    Guo, A.2    He, K.3    Zhang, H.4    Zhu, Q.5    Chen, X.6    Gao, G.7    Luo, J.8
  • 18
    • 84875898037 scopus 로고    scopus 로고
    • Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    • Jia,J., Zhao,S., Kong,X., Li,Y., Zhao,G., He,W., Appels,R., Pfeifer,M., Tao,Y. and Zhang,X. (2013) Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature, 496, 91-95.
    • (2013) Nature , vol.496 , pp. 91-95
    • Jia, J.1    Zhao, S.2    Kong, X.3    Li, Y.4    Zhao, G.5    He, W.6    Appels, R.7    Pfeifer, M.8    Tao, Y.9    Zhang, X.10
  • 24
    • 84936881609 scopus 로고    scopus 로고
    • An Arabidopsis transcriptional regulatory map reveals distinct functional and evolutionary features of novel transcription factors
    • Jin,J., He,K., Tang,X., Li,Z., Lv,L., Zhao,Y., Luo,J. and Gao,G. (2015) An Arabidopsis transcriptional regulatory map reveals distinct functional and evolutionary features of novel transcription factors. Mol. Biol. Evol., 32, 1767-1773.
    • (2015) Mol. Biol. Evol. , vol.32 , pp. 1767-1773
    • Jin, J.1    He, K.2    Tang, X.3    Li, Z.4    Lv, L.5    Zhao, Y.6    Luo, J.7    Gao, G.8
  • 26
    • 84946069451 scopus 로고    scopus 로고
    • UniProt: A hub for protein information
    • Consortium,U.
    • Consortium,U. (2015) UniProt: a hub for protein information. Nucleic Acids Res., 43, D204-D212.
    • (2015) Nucleic Acids Res. , vol.43 , pp. D204-D212
  • 28
    • 84938582898 scopus 로고    scopus 로고
    • OrthoFinder: Solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
    • Emms,D.M. and Kelly,S. (2015) OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy. Genome Biol., 16, 1.
    • (2015) Genome Biol. , vol.16 , pp. 1
    • Emms, D.M.1    Kelly, S.2
  • 30
    • 79957766214 scopus 로고    scopus 로고
    • Prediction of regulatory interactions from genome sequences using a biophysical model for the Arabidopsis LEAFY transcription factor
    • Moyroud,E.,Minguet,E.G., Ott,F., Yant,L., Pose,D., Monniaux,M., Blanchet,S., Bastien,O., Thevenon,E.,Weigel,D. et al. (2011) Prediction of regulatory interactions from genome sequences using a biophysical model for the Arabidopsis LEAFY transcription factor. Plant Cell, 23, 1293-1306.
    • (2011) Plant Cell , vol.23 , pp. 1293-1306
    • Moyroud, E.1    Minguet, E.G.2    Ott, F.3    Yant, L.4    Pose, D.5    Monniaux, M.6    Blanchet, S.7    Bastien, O.8    Thevenon, E.9    Weigel, D.10
  • 33
    • 84946068207 scopus 로고    scopus 로고
    • UniPROBE, update 2015: New tools and content for the online database of protein-binding microarray data on protein-DNA interactions
    • Hume,M.A., Barrera,L.A., Gisselbrecht,S.S. and Bulyk,M.L. (2015) UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res., 43, D117-D122.
    • (2015) Nucleic Acids Res. , vol.43 , pp. D117-D122
    • Hume, M.A.1    Barrera, L.A.2    Gisselbrecht, S.S.3    Bulyk, M.L.4
  • 35
    • 79958117256 scopus 로고    scopus 로고
    • MEME-ChIP: Motif analysis of large DNA datasets
    • Machanick,P. and Bailey,T.L. (2011) MEME-ChIP: motif analysis of large DNA datasets. Bioinformatics, 27, 1696-1697.
    • (2011) Bioinformatics , vol.27 , pp. 1696-1697
    • Machanick, P.1    Bailey, T.L.2
  • 36
    • 0033290515 scopus 로고    scopus 로고
    • ESTScan: A program for detecting, evaluating, and reconstructing potential coding regions in EST sequences
    • Iseli,C., Jongeneel,C.V. and Bucher,P. (1999) ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences. Proc. Int. Conf. Intell. Syst. Mol. Biol., 138-148.
    • (1999) Proc. Int. Conf. Intell. Syst. Mol. Biol. , pp. 138-148
    • Iseli, C.1    Jongeneel, C.V.2    Bucher, P.3
  • 37
    • 79953300078 scopus 로고    scopus 로고
    • FIMO: Scanning for occurrences of a given motif
    • Grant,C.E., Bailey,T.L. and Noble,W.S. (2011) FIMO: scanning for occurrences of a given motif. Bioinformatics, 27, 1017-1018.
    • (2011) Bioinformatics , vol.27 , pp. 1017-1018
    • Grant, C.E.1    Bailey, T.L.2    Noble, W.S.3


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