-
1
-
-
0034671865
-
Arabidopsis transcription factors: Genome-wide comparative analysis among eukaryotes
-
Riechmann, J.L., Heard, J., Martin, G., et al. 2000, Arabidopsis transcription factors: Genome-wide comparative analysis among eukaryotes, Science, 290, 2105-10.
-
(2000)
Science
, vol.290
, pp. 2105-2110
-
-
Riechmann, J.L.1
Heard, J.2
Martin, G.3
-
2
-
-
77956447296
-
Potential utilization of NAC transcription factors to enhance abiotic stress tolerance in plants by biotechnological approach
-
Tran, L.S., Nishiyama, R., Yamaguchi-Shinozaki, K. and Shinozaki, K. 2010, Potential utilization of NAC transcription factors to enhance abiotic stress tolerance in plants by biotechnological approach, GM Crops, 1, 32-9.
-
(2010)
GM Crops
, vol.1
, pp. 32-39
-
-
Tran, L.S.1
Nishiyama, R.2
Yamaguchi-Shinozaki, K.3
Shinozaki, K.4
-
3
-
-
79751533964
-
Progress studies of drought-responsive genes in rice
-
Hadiarto, T. and Tran, L.S. 2011, Progress studies of drought-responsive genes in rice, Plant Cell Rep., 30, 297-310.
-
(2011)
Plant Cell Rep.
, vol.30
, pp. 297-310
-
-
Hadiarto, T.1
Tran, L.S.2
-
4
-
-
84868345850
-
Potentials toward genetic engineering of drought-tolerant soybean
-
Thao, N.P. and Tran, L.S. 2011, Potentials toward genetic engineering of drought-tolerant soybean, Crit. Rev. Biotechnol., 32, 349-62.
-
(2011)
Crit. Rev. Biotechnol.
, vol.32
, pp. 349-362
-
-
Thao, N.P.1
Tran, L.S.2
-
5
-
-
84873117349
-
System biology-based approaches towards understanding drought tolerance in food crops
-
doi:10.3109/07388551.2012.659174
-
Jogaiah, S., Ramsandra Govind, S. and Tran, L.S. 2012, System biology-based approaches towards understanding drought tolerance in food crops, Crit. Rev. Biotechnol., doi:10.3109/07388551.2012.659174.
-
(2012)
Crit. Rev. Biotechnol.
-
-
Jogaiah, S.1
Ramsandra Govind, S.2
Tran, L.S.3
-
6
-
-
84856416305
-
Transcriptional switches direct plant organ formation and patterning
-
Moreno-Risueno, M.A., Van Norman, J.M. and Benfey, P.N. 2012, Transcriptional switches direct plant organ formation and patterning, Curr. Top. Dev. Biol., 98, 229-57.
-
(2012)
Curr. Top. Dev. Biol.
, vol.98
, pp. 229-257
-
-
Moreno-Risueno, M.A.1
Van Norman, J.M.2
Benfey, P.N.3
-
7
-
-
35748944541
-
Plant gene networks in osmotic stress response: From genes to regulatory networks
-
Tran, L.S., Nakashima, K., Shinozaki, K. and Yamaguchi-Shinozaki, K. 2007, Plant gene networks in osmotic stress response: From genes to regulatory networks, Methods Enzymol., 428, 109-28.
-
(2007)
Methods Enzymol.
, vol.428
, pp. 109-128
-
-
Tran, L.S.1
Nakashima, K.2
Shinozaki, K.3
Yamaguchi-Shinozaki, K.4
-
8
-
-
57749089790
-
Arabidopsis DREB2A-interacting proteins function as RING E3 ligases and negatively regulate plant drought stressresponsive gene expression
-
Qin, F., Sakuma, Y., Tran, L.S., et al. 2008, Arabidopsis DREB2A-interacting proteins function as RING E3 ligases and negatively regulate plant drought stressresponsive gene expression, Plant Cell, 20, 1693-707.
-
(2008)
Plant Cell
, vol.20
, pp. 1693-1707
-
-
Qin, F.1
Sakuma, Y.2
Tran, L.S.3
-
9
-
-
84861716982
-
Multiple histone methyl and acetyltransferase complex components bind the HLA-DRA gene
-
Choi, N.M. and Boss, J.M. 2012, Multiple histone methyl and acetyltransferase complex components bind the HLA-DRA gene, PLoS One, 7, e37554.
-
(2012)
PLoS One
, vol.7
-
-
Choi, N.M.1
Boss, J.M.2
-
10
-
-
13744261322
-
Organization of cis-acting regulatory elements in osmotic-and cold-stress-responsive promoters
-
Yamaguchi-Shinozaki, K. and Shinozaki, K. 2005, Organization of cis-acting regulatory elements in osmotic-and cold-stress-responsive promoters, Trends Plant Sci., 10, 88-94.
-
(2005)
Trends Plant Sci.
, vol.10
, pp. 88-94
-
-
Yamaguchi-Shinozaki, K.1
Shinozaki, K.2
-
11
-
-
77954962725
-
Identification and prediction of abiotic stress responsive transcription factors involved in abiotic stress signaling in soybean
-
Tran, L.S. and Mochida, K. 2010, Identification and prediction of abiotic stress responsive transcription factors involved in abiotic stress signaling in soybean, Plant Signal Behav., 5, 255-7.
-
(2010)
Plant Signal Behav.
, vol.5
, pp. 255-257
-
-
Tran, L.S.1
Mochida, K.2
-
12
-
-
77954987186
-
A platform for functional prediction and comparative analyses of transcription factors of legumes and beyond
-
Tran, L.S. and Mochida, K. 2010, A platform for functional prediction and comparative analyses of transcription factors of legumes and beyond, Plant Signal Behav., 5, 550-2.
-
(2010)
Plant Signal Behav.
, vol.5
, pp. 550-552
-
-
Tran, L.S.1
Mochida, K.2
-
13
-
-
78650517886
-
Functional genomics of soybean for improvement of productivity in adverse conditions
-
Tran, L.S. and Mochida, K. 2010, Functional genomics of soybean for improvement of productivity in adverse conditions, Funct. Integr. Genomics, 10, 447-62.
-
(2010)
Funct. Integr. Genomics
, vol.10
, pp. 447-462
-
-
Tran, L.S.1
Mochida, K.2
-
14
-
-
77952903335
-
Genomics and bioinformatics resources for crop improvement
-
Mochida, K. and Shinozaki, K. 2010, Genomics and bioinformatics resources for crop improvement, Plant Cell Physiol., 51, 497-523.
-
(2010)
Plant Cell Physiol.
, vol.51
, pp. 497-523
-
-
Mochida, K.1
Shinozaki, K.2
-
15
-
-
33646596265
-
RARTF: Database and tools for complete sets of Arabidopsis transcription factors
-
Iida, K., Seki, M., Sakurai, T., et al. 2005, RARTF: Database and tools for complete sets of Arabidopsis transcription factors, DNA Res., 12, 247-56.
-
(2005)
DNA Res.
, vol.12
, pp. 247-256
-
-
Iida, K.1
Seki, M.2
Sakurai, T.3
-
16
-
-
33646884846
-
DRTF: A database of rice transcription factors
-
Gao, G., Zhong, Y., Guo, A., et al. 2006, DRTF: A database of rice transcription factors, Bioinformatics, 22, 1286-7.
-
(2006)
Bioinformatics
, vol.22
, pp. 1286-1287
-
-
Gao, G.1
Zhong, Y.2
Guo, A.3
-
17
-
-
75249102751
-
In silico analysis of transcription factor repertoire and prediction of stress responsive transcription factors in soybean
-
Mochida, K., Yoshida, T., Sakurai, T., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L.S. 2009, In silico analysis of transcription factor repertoire and prediction of stress responsive transcription factors in soybean, DNA Res., 16, 353-69.
-
(2009)
DNA Res.
, vol.16
, pp. 353-369
-
-
Mochida, K.1
Yoshida, T.2
Sakurai, T.3
Yamaguchi-Shinozaki, K.4
Shinozaki, K.5
Tran, L.S.6
-
18
-
-
77649328902
-
SoyDB: A knowledge database of soybean transcription factors
-
Wang, Z., Libault, M., Joshi, T., et al. 2010, SoyDB: A knowledge database of soybean transcription factors, BMC Plant Biol., 10, 14.
-
(2010)
BMC Plant Biol.
, vol.10
, pp. 14
-
-
Wang, Z.1
Libault, M.2
Joshi, T.3
-
19
-
-
39549109483
-
TOBFAC: The database of tobacco transcription factors
-
Rushton, P.J., Bokowiec, M.T., Laudeman, T.W., Brannock, J.F., Chen, X. and Timko, M.P. 2008, TOBFAC: The database of tobacco transcription factors, BMC Bioinformatics, 9, 53.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 53
-
-
Rushton, P.J.1
Bokowiec, M.T.2
Laudeman, T.W.3
Brannock, J.F.4
Chen, X.5
Timko, M.P.6
-
20
-
-
42249096792
-
DATFAP: A database of primers and homology alignments for transcription factors from 13 plant species
-
Fredslund, J. 2008, DATFAP: A database of primers and homology alignments for transcription factors from 13 plant species, BMC Genomics, 9, 140.
-
(2008)
BMC Genomics
, vol.9
, pp. 140
-
-
Fredslund, J.1
-
21
-
-
58449094652
-
GRASSIUS: A platform for comparative regulatory genomics across the grasses
-
Yilmaz, A., Nishiyama, M.Y. Jr, Fuentes, B.G., et al. 2009, GRASSIUS: A platform for comparative regulatory genomics across the grasses, Plant Physiol., 149, 171-80.
-
(2009)
Plant Physiol.
, vol.149
, pp. 171-180
-
-
Yilmaz, A.1
Nishiyama Jr., M.Y.2
Fuentes, B.G.3
-
22
-
-
75549087883
-
PlnTFDB: Updated content and new features of the plant transcription factor database
-
Perez-Rodriguez, P., Riano-Pachon, D.M., Correa, L.G., Rensing, S.A., Kersten, B. and Mueller-Roeber, B. 2010, PlnTFDB: Updated content and new features of the plant transcription factor database, Nucleic Acids Res., 38, D822-7.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Perez-Rodriguez, P.1
Riano-Pachon, D.M.2
Correa, L.G.3
Rensing, S.A.4
Kersten, B.5
Mueller-Roeber, B.6
-
23
-
-
77950465255
-
LegumeTFDB: An integrative database of Glycine max, Lotus japonicus and Medicago truncatula transcription factors
-
Mochida, K., Yoshida, T., Sakurai, T., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L.S. 2010, LegumeTFDB: An integrative database of Glycine max, Lotus japonicus and Medicago truncatula transcription factors, Bioinformatics, 26, 290-1.
-
(2010)
Bioinformatics
, vol.26
, pp. 290-291
-
-
Mochida, K.1
Yoshida, T.2
Sakurai, T.3
Yamaguchi-Shinozaki, K.4
Shinozaki, K.5
Tran, L.S.6
-
24
-
-
80054694145
-
In silico analysis of transcription factor repertoires and prediction of stress-responsive transcription factors from six major gramineae plants
-
Mochida, K., Yoshida, T., Sakurai, T., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L.S. 2011, In silico analysis of transcription factor repertoires and prediction of stress-responsive transcription factors from six major gramineae plants, DNA Res., 18, 321-32.
-
(2011)
DNA Res.
, vol.18
, pp. 321-332
-
-
Mochida, K.1
Yoshida, T.2
Sakurai, T.3
Yamaguchi-Shinozaki, K.4
Shinozaki, K.5
Tran, L.S.6
-
25
-
-
78651337578
-
PlantTFDB 2.0: Update and improvement of the comprehensive plant transcription factor database
-
Zhang, H., Jin, J., Tang, L., et al. 2011, PlantTFDB 2.0: Update and improvement of the comprehensive plant transcription factor database, Nucleic Acids Res., 39, D1114-7.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Zhang, H.1
Jin, J.2
Tang, L.3
-
26
-
-
83255189512
-
Advances in omics and bioinformatics tools for systems analyses of plant functions
-
Mochida, K. and Shinozaki, K. 2011, Advances in omics and bioinformatics tools for systems analyses of plant functions, Plant Cell Physiol., 52, 2017-38.
-
(2011)
Plant Cell Physiol.
, vol.52
, pp. 2017-2038
-
-
Mochida, K.1
Shinozaki, K.2
-
27
-
-
79951842938
-
Sequence analysis of the genome of an oil-bearing tree
-
Sato, S., Hirakawa, H., Isobe, S., et al. 2011, Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L, DNA Res., 18, 65-76.
-
(2011)
Jatropha curcas L, DNA Res.
, vol.18
, pp. 65-76
-
-
Sato, S.1
Hirakawa, H.2
Isobe, S.3
-
28
-
-
67650100882
-
TriFLDB: A database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics
-
Mochida, K., Yoshida, T., Sakurai, T., Ogihara, Y. and Shinozaki, K. 2009, TriFLDB: A database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics, Plant Physiol., 150, 1135-46.
-
(2009)
Plant Physiol.
, vol.150
, pp. 1135-1146
-
-
Mochida, K.1
Yoshida, T.2
Sakurai, T.3
Ogihara, Y.4
Shinozaki, K.5
-
29
-
-
43149094164
-
Pfam 10 years on: 10,000 families and still growing
-
Sammut, S.J., Finn, R.D. and Bateman, A. 2008, Pfam 10 years on: 10,000 families and still growing, Brief Bioinform., 9, 210-9.
-
(2008)
Brief Bioinform.
, vol.9
, pp. 210-219
-
-
Sammut, S.J.1
Finn, R.D.2
Bateman, A.3
-
30
-
-
34447312197
-
DPTF: A database of poplar transcription factors
-
Zhu, Q.H., Guo, A.Y., Gao, G., et al. 2007, DPTF: A database of poplar transcription factors, Bioinformatics, 23, 1307-8.
-
(2007)
Bioinformatics
, vol.23
, pp. 1307-1308
-
-
Zhu, Q.H.1
Guo, A.Y.2
Gao, G.3
-
31
-
-
38549144806
-
The Arabidopsis information resource (TAIR): Gene structure and function annotation
-
Swarbreck, D., Wilks, C., Lamesch, P., et al. 2008, The Arabidopsis information resource (TAIR): Gene structure and function annotation, Nucleic Acids Res., 36, D1009-14.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Swarbreck, D.1
Wilks, C.2
Lamesch, P.3
-
32
-
-
0032918558
-
Plant cis-acting regulatory DNA elements (PLACE) database: 1999
-
Higo, K., Ugawa, Y., Iwamoto, M. and Korenaga, T. 1999, Plant cis-acting regulatory DNA elements (PLACE) database: 1999, Nucleic Acids Res., 27, 297-300.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 297-300
-
-
Higo, K.1
Ugawa, Y.2
Iwamoto, M.3
Korenaga, T.4
-
33
-
-
84870217274
-
Brassinosteroid signaling network and regulation of photomorphogenesis
-
Wang, Z.Y., Bai, M.Y., Oh, E. and Zhu, J.Y. 2012, Brassinosteroid signaling network and regulation of photomorphogenesis, Ann. Rev. Genet., 46, 701-24.
-
(2012)
Ann. Rev. Genet.
, vol.46
, pp. 701-724
-
-
Wang, Z.Y.1
Bai, M.Y.2
Oh, E.3
Zhu, J.Y.4
-
34
-
-
75949096070
-
Using the Generic Genome Browser (GBrowse)
-
Donlin, M.J. 2009, Using the Generic Genome Browser (GBrowse), Curr. Protoc. Bioinform., 28, 9.9.1-25.
-
(2009)
Curr. Protoc. Bioinform.
, vol.28
, pp. 991-995
-
-
Donlin, M.J.1
-
35
-
-
84856514988
-
Tissue-specific whole transcriptome sequencing in castor, directed at understanding triacylglycerol lipid biosynthetic pathways
-
Brown, A.P., Kroon, J.T., Swarbreck, D., et al. 2012, Tissue-specific whole transcriptome sequencing in castor, directed at understanding triacylglycerol lipid biosynthetic pathways, PLoS One, 7, e30100.
-
(2012)
PLoS One
, vol.7
-
-
Brown, A.P.1
Kroon, J.T.2
Swarbreck, D.3
-
36
-
-
77958506746
-
Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: A timeline of loss, gain, expansion, and correlation with complexity
-
Lang, D., Weiche, B., Timmerhaus, G., et al. 2010, Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: A timeline of loss, gain, expansion, and correlation with complexity, Genome Biol. Evol., 2, 488-503.
-
(2010)
Genome Biol. Evol.
, vol.2
, pp. 488-503
-
-
Lang, D.1
Weiche, B.2
Timmerhaus, G.3
-
37
-
-
33847290320
-
The regulatory code for transcriptional response diversity and its relation to genome structural properties in A. thaliana
-
Walther, D., Brunnemann, R. and Selbig, J. 2007, The regulatory code for transcriptional response diversity and its relation to genome structural properties in A. thaliana, PLoS Genet., 3, e11.
-
(2007)
PLoS Genet.
, vol.3
-
-
Walther, D.1
Brunnemann, R.2
Selbig, J.3
-
38
-
-
25144457599
-
Cis-regulatory element based targeted gene finding: Genome-wide identification of abscisic acid-and abiotic stress-responsive genes in Arabidopsis thaliana
-
Zhang, W., Ruan, J., Ho, T.H., You, Y., Yu, T. and Quatrano, R.S. 2005, Cis-regulatory element based targeted gene finding: Genome-wide identification of abscisic acid-and abiotic stress-responsive genes in Arabidopsis thaliana, Bioinformatics, 21, 3074-81.
-
(2005)
Bioinformatics
, vol.21
, pp. 3074-3081
-
-
Zhang, W.1
Ruan, J.2
Ho, T.H.3
You, Y.4
Yu, T.5
Quatrano, R.S.6
-
39
-
-
33845723596
-
Functional conservation of a root hair cell-specific cis-element in angiosperms with different root hair distribution patterns
-
Kim, D.W., Lee, S.H., Choi, S.B., et al. 2006, Functional conservation of a root hair cell-specific cis-element in angiosperms with different root hair distribution patterns, Plant Cell, 18, 2958-70.
-
(2006)
Plant Cell
, vol.18
, pp. 2958-2970
-
-
Kim, D.W.1
Lee, S.H.2
Choi, S.B.3
-
40
-
-
67650175435
-
Cis-element-and transcriptomebased screening of root hair-specific genes and their functional characterization in Arabidopsis
-
Won, S.K., Lee, Y.J., Lee, H.Y., Heo, Y.K., Cho, M. and Cho, H.T. 2009, Cis-element-and transcriptomebased screening of root hair-specific genes and their functional characterization in Arabidopsis, Plant Physiol., 150, 1459-73.
-
(2009)
Plant Physiol.
, vol.150
, pp. 1459-1473
-
-
Won, S.K.1
Lee, Y.J.2
Lee, H.Y.3
Heo, Y.K.4
Cho, M.5
Cho, H.T.6
-
41
-
-
80052576152
-
Cis-regulatory code of stress-responsive transcription in Arabidopsis thaliana
-
Zou, C., Sun, K., Mackaluso, J.D., et al. 2011, Cis-regulatory code of stress-responsive transcription in Arabidopsis thaliana, Proc. Natl. Acad. Sci. USA, 108, 14992-7.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 14992-14997
-
-
Zou, C.1
Sun, K.2
Mackaluso, J.D.3
-
42
-
-
66649122827
-
Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks
-
Vandepoele, K., Quimbaya, M., Casneuf, T., De Veylder, L. and Van de Peer, Y. 2009, Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks, Plant Physiol., 150, 535-46.
-
(2009)
Plant Physiol.
, vol.150
, pp. 535-546
-
-
Vandepoele, K.1
Quimbaya, M.2
Casneuf, T.3
De Veylder, L.4
Van De Peer, Y.5
-
43
-
-
84867022595
-
Contribution of genomics to gene discovery in plant abiotic stress responses
-
Ma, Y., Qin, F. and Tran, L.S. 2012, Contribution of genomics to gene discovery in plant abiotic stress responses, Mol. Plant, 5, 1176-8.
-
(2012)
Mol. Plant
, vol.5
, pp. 1176-1178
-
-
Ma, Y.1
Qin, F.2
Tran, L.S.3
|