-
1
-
-
0003527583
-
-
6th ed. Saunders, Philadelphia, PA
-
Cotran RS, Kumar V, Collins T, Robbins SL. 1999. Robbins pathologic basis of disease, 6th ed. Saunders, Philadelphia, PA.
-
(1999)
Robbins Pathologic Basis of Disease
-
-
Cotran, R.S.1
Kumar, V.2
Collins, T.3
Robbins, S.L.4
-
2
-
-
84942239416
-
Spatial variation in the healthy human lung microbiome and the adapted island model of lung biogeography
-
Dickson RP, Erb-Downward JR, Freeman CM, McCloskey L, Beck JM, Huffnagle GB, Curtis JL. 2015. Spatial variation in the healthy human lung microbiome and the adapted island model of lung biogeography. Ann Am Thorac Soc 12:821–830. https://doi.org/10.1513/AnnalsATS.201501-029OC.
-
(2015)
Ann am Thorac Soc
, vol.12
, pp. 821-830
-
-
Dickson, R.P.1
Erb-Downward, J.R.2
Freeman, C.M.3
McCloskey, L.4
Beck, J.M.5
Huffnagle, G.B.6
Curtis, J.L.7
-
4
-
-
77649119443
-
Disordered microbial communities in asthmatic airways
-
Hilty M, Burke C, Pedro H, Cardenas P, Bush A, Bossley C, Davies J, Ervine A, Poulter L, Pachter L, Moffatt MF, Cookson WO. 2010. Disordered microbial communities in asthmatic airways. PLoS One 5:e8578. https://doi.org/10.1371/journal.pone.0008578.
-
(2010)
Plos One
, vol.5
, pp. 5
-
-
Hilty, M.1
Burke, C.2
Pedro, H.3
Cardenas, P.4
Bush, A.5
Bossley, C.6
Davies, J.7
Ervine, A.8
Poulter, L.9
Pachter, L.10
Moffatt, M.F.11
Cookson, W.O.12
-
5
-
-
84877899252
-
Comparison of the respiratory microbiome in healthy nonsmokers and smokers
-
Morris A, Beck JM, Schloss PD, Campbell TB, Crothers K, Curtis JL, Flores SC, Fontenot AP, Ghedin E, Huang L, Jablonski K, Kleerup E, Lynch SV, Sodergren E, Twigg H, Young VB, Bassis CM, Venkataraman A, Schmidt TM, Weinstock GM, Lung HIV Microbiome Project. 2013. Comparison of the respiratory microbiome in healthy nonsmokers and smokers. Am J Respir Crit Care Med 187:1067–1075. https://doi.org/10.1164/rccm.201210-1913OC.
-
(2013)
Am J Respir Crit Care Med
, vol.187
, pp. 1067-1075
-
-
Morris, A.1
Beck, J.M.2
Schloss, P.D.3
Campbell, T.B.4
Crothers, K.5
Curtis, J.L.6
Flores, S.C.7
Fontenot, A.P.8
Ghedin, E.9
Huang, L.10
Jablonski, K.11
Kleerup, E.12
Lynch, S.V.13
Sodergren, E.14
Twigg, H.15
Young, V.B.16
Bassis, C.M.17
Venkataraman, A.18
Schmidt, T.M.19
Weinstock, G.M.20
Project, L.H.M.21
more..
-
6
-
-
84929493450
-
Analysis of the upper respiratory tract microbiotas as the source of the lung and gastric microbiotas in healthy individuals
-
Bassis CM, Erb-Downward JR, Dickson RP, Freeman CM, Schmidt TM, Young VB, Beck JM, Curtis JL, Huffnagle GB. 2015. Analysis of the upper respiratory tract microbiotas as the source of the lung and gastric microbiotas in healthy individuals. mBio 6:e00037. https://doi.org/10.1128/mBio.00037-15.
-
(2015)
Mbio
, vol.6
-
-
Bassis, C.M.1
Erb-Downward, J.R.2
Dickson, R.P.3
Freeman, C.M.4
Schmidt, T.M.5
Young, V.B.6
Beck, J.M.7
Curtis, J.L.8
Huffnagle, G.B.9
-
7
-
-
84924172977
-
Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation
-
Segal LN, Alekseyenko AV, Clemente JC, Kulkarni R, Wu B, Gao Z, Chen H, Berger KI, Goldring RM, Rom WN, Blaser MJ, Weiden MD. 2013. Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation. Microbiome 1:19. https://doi.org/10.1186/2049-2618-1-19.
-
(2013)
Microbiome
, vol.1
, pp. 19
-
-
Segal, L.N.1
Alekseyenko, A.V.2
Clemente, J.C.3
Kulkarni, R.4
Wu, B.5
Gao, Z.6
Chen, H.7
Berger, K.I.8
Goldring, R.M.9
Rom, W.N.10
Blaser, M.J.11
Weiden, M.D.12
-
8
-
-
84901320562
-
Changes in the lung microbiome following lung transplantation include the emergence of two distinct pseudomonas species with distinct clinical associations
-
Dickson RP, Erb-Downward JR, Freeman CM, Walker N, Scales BS, Beck JM, Martinez FJ, Curtis JL, Lama VN, Huffnagle GB. 2014. Changes in the lung microbiome following lung transplantation include the emergence of two distinct pseudomonas species with distinct clinical associations. PLoS One 9:e97214. https://doi.org/10.1371/journal.pone.0097214.
-
(2014)
Plos One
, vol.9
, pp. 9
-
-
Dickson, R.P.1
Erb-Downward, J.R.2
Freeman, C.M.3
Walker, N.4
Scales, B.S.5
Beck, J.M.6
Martinez, F.J.7
Curtis, J.L.8
Lama, V.N.9
Huffnagle, G.B.10
-
9
-
-
84924094264
-
Application of a neutral community model to assess structuring of the human lung microbiome
-
Venkataraman A, Bassis CM, Beck JM, Young VB, Curtis JL, Huffnagle GB, Schmidt TM. 2015. Application of a neutral community model to assess structuring of the human lung microbiome. mBio 6:e02284-14. https://doi.org/10.1128/mBio.02284-14.
-
(2015)
Mbio
, vol.6
-
-
Venkataraman, A.1
Bassis, C.M.2
Beck, J.M.3
Young, V.B.4
Curtis, J.L.5
Huffnagle, G.B.6
Schmidt, T.M.7
-
10
-
-
85008647885
-
Enrichment of the lung microbiome with oral taxa is associated with lung inflammation of a Th17 phenotype
-
Segal LN, Clemente JC, Tsay JC, Koralov SB, Keller BC, Wu BG, Li Y, Shen N, Ghedin E, Morris A, Diaz P, Huang L, Wikoff WR, Ubeda C, Artacho A, Rom WN, Sterman DH, Collman RG, Blaser MJ, Weiden MD. 2016. Enrichment of the lung microbiome with oral taxa is associated with lung inflammation of a Th17 phenotype. Nat Microbiol 1:16031. https://doi.org/10.1038/nmicrobiol.2016.31.
-
(2016)
Nat Microbiol
, vol.1
, pp. 16031
-
-
Segal, L.N.1
Clemente, J.C.2
Tsay, J.C.3
Koralov, S.B.4
Keller, B.C.5
Wu, B.G.6
Li, Y.7
Shen, N.8
Ghedin, E.9
Morris, A.10
Diaz, P.11
Huang, L.12
Wikoff, W.R.13
Ubeda, C.14
Artacho, A.15
Rom, W.N.16
Sterman, D.H.17
Collman, R.G.18
Blaser, M.J.19
Weiden, M.D.20
more..
-
11
-
-
84988951699
-
Presence of Tropheryma whipplei in different body sites in a cohort of healthy subjects
-
Qin S, Clausen E, Lucht L, Michael H, Beck JM, Curtis JL, Freeman CM, Morris A. 2016. Presence of Tropheryma whipplei in different body sites in a cohort of healthy subjects. Am J Respir Crit Care Med 194:243–245. https://doi.org/10.1164/rccm.201601-0162LE.
-
(2016)
Am J Respir Crit Care Med
, vol.194
, pp. 243-245
-
-
Qin, S.1
Clausen, E.2
Lucht, L.3
Michael, H.4
Beck, J.M.5
Curtis, J.L.6
Freeman, C.M.7
Morris, A.8
-
12
-
-
84895811657
-
Towards an ecology of the lung: New conceptual models of pulmonary microbiology and pneumonia pathogenesis
-
Dickson RP, Erb-Downward JR, Huffnagle GB. 2014. Towards an ecology of the lung: new conceptual models of pulmonary microbiology and pneumonia pathogenesis. Lancet Respir Med 2:238–246. https://doi.org/10.1016/S2213-2600(14)70028-1.
-
(2014)
Lancet Respir Med
, vol.2
, pp. 238-246
-
-
Dickson, R.P.1
Erb-Downward, J.R.2
Huffnagle, G.B.3
-
13
-
-
84906673705
-
The role of the microbiome in exacerbations of chronic lung diseases
-
Dickson RP, Martinez FJ, Huffnagle GB. 2014. The role of the microbiome in exacerbations of chronic lung diseases. Lancet 384:691–702. https://doi.org/10.1016/S0140-6736(14)61136-3.
-
(2014)
Lancet
, vol.384
, pp. 691-702
-
-
Dickson, R.P.1
Martinez, F.J.2
Huffnagle, G.B.3
-
14
-
-
84938799471
-
The lung microbiome: New principles for respiratory bacteriology in health and disease
-
Dickson RP, Huffnagle GB. 2015. The lung microbiome: new principles for respiratory bacteriology in health and disease. PLoS Pathog 11: e1004923. https://doi.org/10.1371/journal.ppat.1004923.
-
(2015)
Plos Pathog
, vol.11
, pp. 11
-
-
Dickson, R.P.1
Huffnagle, G.B.2
-
15
-
-
84866126809
-
Assessing bacterial populations in the lung by replicate analysis of samples from the upper and lower respiratory tracts
-
Charlson ES, Bittinger K, Chen J, Diamond JM, Li H, Collman RG, Bushman FD. 2012. Assessing bacterial populations in the lung by replicate analysis of samples from the upper and lower respiratory tracts. PLoS One 7:e42786. https://doi.org/10.1371/journal.pone.0042786.
-
(2012)
Plos One
, vol.7
, pp. 7
-
-
Charlson, E.S.1
Bittinger, K.2
Chen, J.3
Diamond, J.M.4
Li, H.5
Collman, R.G.6
Bushman, F.D.7
-
16
-
-
80053122563
-
Topographical continuity of bacterial populations in the healthy human respiratory tract
-
Charlson ES, Bittinger K, Haas AR, Fitzgerald AS, Frank I, Yadav A, Bushman FD, Collman RG. 2011. Topographical continuity of bacterial populations in the healthy human respiratory tract. Am J Respir Crit Care Med 184:957–963. https://doi.org/10.1164/rccm.201104-0655OC.
-
(2011)
Am J Respir Crit Care Med
, vol.184
, pp. 957-963
-
-
Charlson, E.S.1
Bittinger, K.2
Haas, A.R.3
Fitzgerald, A.S.4
Frank, I.5
Yadav, A.6
Bushman, F.D.7
Collman, R.G.8
-
17
-
-
0030988811
-
Quantitative aspiration during sleep in normal subjects
-
Gleeson K, Eggli DF, Maxwell SL. 1997. Quantitative aspiration during sleep in normal subjects. Chest 111:1266–1272. https://doi.org/10.1378/chest.111.5.1266.
-
(1997)
Chest
, vol.111
, pp. 1266-1272
-
-
Gleeson, K.1
Eggli, D.F.2
Maxwell, S.L.3
-
18
-
-
84861399683
-
The lung tissue microbiome in chronic obstructive pulmonary disease
-
Sze MA, Dimitriu PA, Hayashi S, Elliott WM, McDonough JE, Gosselink JV, Cooper J, Sin DD, Mohn WW, Hogg JC. 2012. The lung tissue microbiome in chronic obstructive pulmonary disease. Am J Respir Crit Care Med 185:1073–1080. https://doi.org/10.1164/rccm.201111-2075OC.
-
(2012)
Am J Respir Crit Care Med
, vol.185
, pp. 1073-1080
-
-
Sze, M.A.1
Dimitriu, P.A.2
Hayashi, S.3
Elliott, W.M.4
McDonough, J.E.5
Gosselink, J.V.6
Cooper, J.7
Sin, D.D.8
Mohn, W.W.9
Hogg, J.C.10
-
19
-
-
84903993583
-
Lung microbiome and disease progression in idiopathic pulmonary fibrosis: An analysis of the COMET study.
-
Han MK, Zhou Y, Murray S, Tayob N, Noth I, Lama VN, Moore BB, White ES, Flaherty KR, Huffnagle GB, Martinez FJ, COMET Investigators. 2014. Lung microbiome and disease progression in idiopathic pulmonary fibrosis: an analysis of the COMET study. Lancet Respir Med 2:548–556. https://doi.org/10.1016/S2213-2600(14)70069-4.
-
(2014)
Lancet Respir Med
, vol.2
, pp. 548-556
-
-
Han, M.K.1
Zhou, Y.2
Murray, S.3
Tayob, N.4
Noth, I.5
Lama, V.N.6
Moore, B.B.7
White, E.S.8
Flaherty, K.R.9
Huffnagle, G.B.10
Martinez, F.J.11
-
20
-
-
84960413570
-
The lung microbiome and exacerbations of COPD
-
Dy R, Sethi S. 2016. The lung microbiome and exacerbations of COPD. Curr Opin Pulm Med 22:196–202. https://doi.org/10.1097/MCP.0000000000000268.
-
(2016)
Curr Opin Pulm Med
, vol.22
, pp. 196-202
-
-
Dy, R.1
Sethi, S.2
-
21
-
-
0018343421
-
A fiberoptic bronchoscopy technique to obtain uncontaminated lower airway secretions for bacterial culture
-
Wimberley N, Faling LJ, Bartlett JG. 1979. A fiberoptic bronchoscopy technique to obtain uncontaminated lower airway secretions for bacterial culture. Am Rev Respir Dis 119:337–343. https://doi.org/10.1164/arrd.1979.119.3.337.
-
(1979)
Am Rev Respir Dis
, vol.119
, pp. 337-343
-
-
Wimberley, N.1
Faling, L.J.2
Bartlett, J.G.3
-
22
-
-
0032417007
-
Epidemiology of ventilator-acquired pneumonia based on protected bronchoscopic sampling
-
George DL, Falk PS, Wunderink RG, Leeper KV, Meduri GU, Steere EL, Corbett CE, Mayhall CG. 1998. Epidemiology of ventilator-acquired pneumonia based on protected bronchoscopic sampling. Am J Respir Crit Care Med 158:1839–1847. https://doi.org/10.1164/ajrccm.158.6.9610069.
-
(1998)
Am J Respir Crit Care Med
, vol.158
, pp. 1839-1847
-
-
George, D.L.1
Falk, P.S.2
Wunderink, R.G.3
Leeper, K.V.4
Meduri, G.U.5
Steere, E.L.6
Corbett, C.E.7
Mayhall, C.G.8
-
23
-
-
33846134704
-
Bronchoscopic diagnosis of pulmonary infiltrates in granulocytopenic patients with hematologic malignancies: BAL versus PSB and PBAL
-
Boersma WG, Erjavec Z, van der Werf TS, de Vries-Hosper HG, Gouw AS, Manson WL. 2007. Bronchoscopic diagnosis of pulmonary infiltrates in granulocytopenic patients with hematologic malignancies: BAL versus PSB and PBAL. Respir Med 101:317–325. https://doi.org/10.1016/j.rmed.2006.04.021.
-
(2007)
Respir Med
, vol.101
, pp. 317-325
-
-
Boersma, W.G.1
Erjavec, Z.2
Van Der Werf, T.S.3
De Vries-Hosper, H.G.4
Gouw, A.S.5
Manson, W.L.6
-
24
-
-
84904569753
-
Conducting a microbiome study
-
Goodrich JK, Di Rienzi SC, Poole AC, Koren O, Walters WA, Caporaso JG, Knight R, Ley RE. 2014. Conducting a microbiome study. Cell 158: 250–262. https://doi.org/10.1016/j.cell.2014.06.037.
-
(2014)
Cell
, vol.158
, pp. 250-262
-
-
Goodrich, J.K.1
Di Rienzi, S.C.2
Poole, A.C.3
Koren, O.4
Walters, W.A.5
Caporaso, J.G.6
Knight, R.7
Ley, R.E.8
-
25
-
-
0015392072
-
The internal surface area of the adult human lung
-
Hasleton PS. 1972. The internal surface area of the adult human lung. J Anat 112:391–400.
-
(1972)
J Anat
, vol.112
, pp. 391-400
-
-
Hasleton, P.S.1
-
26
-
-
25444459615
-
Investigative bron-choprovocation and bronchoscopy in airway diseases
-
Busse WW, Wanner A, Adams K, Reynolds HY, Castro M, Chowdhury B, Kraft M, Levine RJ, Peters SP, Sullivan EJ. 2005. Investigative bron-choprovocation and bronchoscopy in airway diseases. Am J Respir Crit Care Med 172:807–816. https://doi.org/10.1164/rccm.200407-966WS.
-
(2005)
Am J Respir Crit Care Med
, vol.172
, pp. 807-816
-
-
Busse, W.W.1
Wanner, A.2
Adams, K.3
Reynolds, H.Y.4
Castro, M.5
Chowdhury, B.6
Kraft, M.7
Levine, R.J.8
Peters, S.P.9
Sullivan, E.J.10
-
27
-
-
79960993627
-
Safety of investigative bronchoscopy in the Severe Asthma Research Program
-
Moore WC, Evans MD, Bleecker ER, Busse WW, Calhoun WJ, Castro M, Chung KF, Erzurum SC, Curran-Everett D, Dweik RA, Gaston B, Hew M, Israel E, Mayse ML, Pascual RM, Peters SP, Silveira L, Wenzel SE, Jarjour NN, National Heart, Lung, and Blood Institute’s Severe Asthma Research Group. 2011. Safety of investigative bronchoscopy in the Severe Asthma Research Program. J Allergy Clin Immunol 128:328–336.e3. https://doi.org/10.1016/j.jaci.2011.02.042.
-
(2011)
J Allergy Clin Immunol
, vol.3
, pp. 328-336
-
-
Moore, W.C.1
Evans, M.D.2
Bleecker, E.R.3
Busse, W.W.4
Calhoun, W.J.5
Castro, M.6
Chung, K.F.7
Erzurum, S.C.8
Curran-Everett, D.9
Dweik, R.A.10
Gaston, B.11
Hew, M.12
Israel, E.13
Mayse, M.L.14
Pascual, R.M.15
Peters, S.P.16
Silveira, L.17
Wenzel, S.E.18
Jarjour, N.N.19
-
28
-
-
84938936364
-
Design of a multi-center immunophenotyping analysis of peripheral blood, sputum and bronchoalveolar lavage fluid in the Subpopulations and Intermediate Outcome Measures in COPD Study (SPIROMICS)
-
Freeman CM, Crudgington S, Stolberg VR, Brown JP, Sonstein J, Alexis NE, Doerschuk CM, Basta PV, Carretta EE, Couper DJ, Hastie AT, Kaner RJ, O’Neal WK, Paine R, Rennard SI, Shimbo D, Woodruff PG, Zeidler M, Curtis JL. 2015. Design of a multi-center immunophenotyping analysis of peripheral blood, sputum and bronchoalveolar lavage fluid in the Subpopulations and Intermediate Outcome Measures in COPD Study (SPIROMICS). J Transl Med 13:19. https://doi.org/10.1186/s12967-014-0374-z.
-
(2015)
J Transl Med
, vol.13
, pp. 19
-
-
Freeman, C.M.1
Crudgington, S.2
Stolberg, V.R.3
Brown, J.P.4
Sonstein, J.5
Alexis, N.E.6
Doerschuk, C.M.7
Basta, P.V.8
Carretta, E.E.9
Couper, D.J.10
Hastie, A.T.11
Kaner, R.J.12
O’Neal, W.K.13
Paine, R.14
Rennard, S.I.15
Shimbo, D.16
Woodruff, P.G.17
Zeidler, M.18
Curtis, J.L.19
-
29
-
-
84943656441
-
Rationale and design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis (GRADS) Study. Sarcoidosis Protocol
-
Moller DR, Koth LL, Maier LA, Morris A, Drake W, Rossman M, Leader JK, Collman RG, Hamzeh N, Sweiss NJ, Zhang Y, O’Neal S, Senior RM, Becich M, Hochheiser HS, Kaminski N, Wisniewski SR, Gibson KF, GRADS Sarcoidosis Study Group. 2015. Rationale and design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis (GRADS) Study. Sarcoidosis Protocol. Ann Am Thorac Soc 12:1561–1571. https://doi.org/10.1513/AnnalsATS.201503-172OT.
-
(2015)
Ann am Thorac Soc
, vol.12
, pp. 1561-1571
-
-
Moller, D.R.1
Koth, L.L.2
Maier, L.A.3
Morris, A.4
Drake, W.5
Rossman, M.6
Leader, J.K.7
Collman, R.G.8
Hamzeh, N.9
Sweiss, N.J.10
Zhang, Y.11
O’Neal, S.12
Senior, R.M.13
Becich, M.14
Hochheiser, H.S.15
Kaminski, N.16
Wisniewski, S.R.17
Gibson, K.F.18
-
30
-
-
84943602660
-
Rationale and design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis Study. Alpha-1 Protocol
-
Strange C, Senior RM, Sciurba F, O’Neal S, Morris A, Wisniewski SR, Bowler R, Hochheiser HS, Becich MJ, Zhang Y, Leader JK, Methé BA, Kaminski N, Sandhaus RA, GRADS Alpha-1 Study Group. 2015. Rationale and design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis Study. Alpha-1 Protocol. Ann Am Thorac Soc 12: 1551–1560. https://doi.org/10.1513/AnnalsATS.201503-143OC.
-
(2015)
Ann am Thorac Soc
, vol.12
, pp. 1551-1560
-
-
Strange, C.1
Senior, R.M.2
Sciurba, F.3
O’Neal, S.4
Morris, A.5
Wisniewski, S.R.6
Bowler, R.7
Hochheiser, H.S.8
Becich, M.J.9
Zhang, Y.10
Leader, J.K.11
Methé, B.A.12
Kaminski, N.13
Sandhaus, R.A.14
-
31
-
-
79952063902
-
Analysis of the lung microbiome in the ‘healthy’ smoker and in COPD
-
Erb-Downward JR, Thompson DL, Han MK, Freeman CM, McCloskey L, Schmidt LA, Young VB, Toews GB, Curtis JL, Sundaram B, Martinez FJ, Huffnagle GB. 2011. Analysis of the lung microbiome in the ‘healthy’ smoker and in COPD. PLoS One 6:e16384. https://doi.org/10.1371/journal.pone.0016384.
-
(2011)
Plos One
, vol.6
, pp. 6
-
-
Erb-Downward, J.R.1
Thompson, D.L.2
Han, M.K.3
Freeman, C.M.4
McCloskey, L.5
Schmidt, L.A.6
Young, V.B.7
Toews, G.B.8
Curtis, J.L.9
Sundaram, B.10
Martinez, F.J.11
Huffnagle, G.B.12
-
32
-
-
84920644670
-
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
-
Salter SJ, Cox MJ, Turek EM, Calus ST, Cookson WO, Moffatt MF, Turner P, Parkhill J, Loman NJ, Walker AW. 2014. Reagent and laboratory contamination can critically impact sequence-based microbiome analyses. BMC Biol 12:87. https://doi.org/10.1186/s12915-014-0087-z.
-
(2014)
BMC Biol
, vol.12
, pp. 87
-
-
Salter, S.J.1
Cox, M.J.2
Turek, E.M.3
Calus, S.T.4
Cookson, W.O.5
Moffatt, M.F.6
Turner, P.7
Parkhill, J.8
Loman, N.J.9
Walker, A.W.10
-
33
-
-
0017872613
-
Pharyngeal aspiration in normal adults and patients with depressed consciousness
-
Huxley EJ, Viroslav J, Gray WR, Pierce AK. 1978. Pharyngeal aspiration in normal adults and patients with depressed consciousness. Am J Med 64:564–568. https://doi.org/10.1016/0002-9343(78)90574-0.
-
(1978)
Am J Med
, vol.64
, pp. 564-568
-
-
Huxley, E.J.1
Viroslav, J.2
Gray, W.R.3
Pierce, A.K.4
-
34
-
-
0001377312
-
The relationship of sinusitis and bronchiec-tasis
-
Quinn LH, Meyer OO. 1929. The relationship of sinusitis and bronchiec-tasis. Arch Otolaryngology 10:152–165. https://doi.org/10.1001/archotol.1929.00620050048003.
-
(1929)
Arch Otolaryngology
, vol.10
, pp. 152-165
-
-
Quinn, L.H.1
Meyer, O.O.2
-
35
-
-
84938484057
-
Cell-associated bacteria in the human lung microbiome
-
Dickson RP, Erb-Downward JR, Prescott HC, Martinez FJ, Curtis JL, Lama VN, Huffnagle GB. 2014. Cell-associated bacteria in the human lung microbiome. Microbiome 2:28. https://doi.org/10.1186/2049-2618-2-28.
-
(2014)
Microbiome
, vol.2
, pp. 28
-
-
Dickson, R.P.1
Erb-Downward, J.R.2
Prescott, H.C.3
Martinez, F.J.4
Curtis, J.L.5
Lama, V.N.6
Huffnagle, G.B.7
-
36
-
-
79952005915
-
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
-
Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Lozupone CA, Turnbaugh PJ, Fierer N, Knight R. 2011. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci U S A 108(Suppl 1):4516–4522. https://doi.org/10.1073/pnas.1000080107.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 4516-4522
-
-
Caporaso, J.G.1
Lauber, C.L.2
Walters, W.A.3
Berg-Lyons, D.4
Lozupone, C.A.5
Turnbaugh, P.J.6
Fierer, N.7
Knight, R.8
-
37
-
-
84884251320
-
Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform
-
Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD. 2013. Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform. Appl Environ Microbiol 79:5112–5120. https://doi.org/10.1128/AEM.01043-13.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 5112-5120
-
-
Kozich, J.J.1
Westcott, S.L.2
Baxter, N.T.3
Highlander, S.K.4
Schloss, P.D.5
-
38
-
-
85014835234
-
MiSeq SOP—mothur
-
University of Michigan, Ann Arbor, MI
-
Schloss PD. 2015. MiSeq SOP—mothur. Department of Microbiology and Immunology, University of Michigan, Ann Arbor, MI. http://www.mothur.org/wiki/MiSeq_SOP.
-
(2015)
Department of Microbiology and Immunology
-
-
Schloss, P.D.1
-
39
-
-
72949107142
-
Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF. 2009. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75:7537–7541. https://doi.org/10.1128/AEM.01541-09.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
Sahl, J.W.11
Stres, B.12
Thallinger, G.G.13
Van Horn, D.J.14
Weber, C.F.15
-
40
-
-
85014815344
-
-
Center for Microbial Ecology, Michigan State University, East Lansing, MI
-
Center for Microbial Ecology. 2015. RDP release 11, update 3. Center for Microbial Ecology, Michigan State University, East Lansing, MI. https://rdp.cme.msu.edu/.
-
(2015)
RDP Release 11, Update
, pp. 3
-
-
-
41
-
-
79958234181
-
-
R Foundation for Statistical Computing, Vienna, Austria
-
Oksanen JF, Blanchet G, Kindt R, Legendre P, Minchin PR, O’Hara RB, Simpson GL, Solymos P, Stevens MHH, Wagner H. 2012. vegan: community ecology package. R package version 2.0-4. R Foundation for Statistical Computing, Vienna, Austria. https://cran.r-project.org/web/packages/vegan/index.html.
-
(2012)
Vegan: Community Ecology Package. R Package Version 2
, pp. 0-4
-
-
Oksanen, J.F.1
Blanchet, G.2
Kindt, R.3
Legendre, P.4
Minchin, P.R.5
O’Hara, R.B.6
Simpson, G.L.7
Solymos, P.8
Stevens, M.9
Wagner, H.10
-
42
-
-
84888782821
-
R: A language and environment for statistical computing
-
Vienna, Austria
-
R Core Team. 2013. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. http://www.gbif.org/resource/81287.
-
(2013)
R Foundation for Statistical Computing
-
-
Core Team, R.1
-
43
-
-
84867392377
-
Mvabund-an R package for model-based analysis of multivariate abundance data
-
Wang Y, Naumann U, Wright ST, Warton DI. 2012. mvabund-an R package for model-based analysis of multivariate abundance data. Methods Ecol Evol 3:471–474. https://doi.org/10.1111/j.2041-210X.2012.00190.x.
-
Methods Ecol Evol
, vol.3
, pp. 471-474
-
-
Wang, Y.1
Naumann, U.2
Wright, S.T.3
-
44
-
-
0016355478
-
A new look at the statistical model identification
-
Akaike H. 1974. A new look at the statistical model identification. IEEE Trans Automat Control 19:716–723. https://doi.org/10.1109/TAC.1974.1100705.
-
(1974)
IEEE Trans Automat Control
, vol.19
, pp. 716-723
-
-
Akaike, H.1
-
45
-
-
84992187637
-
Complex heat maps reveal patterns and correlations in multidimensional genomic data
-
Gu Z, Eils R, Schlesner M. 2016. Complex heat maps reveal patterns and correlations in multidimensional genomic data. Bioinformatics 32: 2847–2849. https://doi.org/10.1093/bioinformatics/btw313.
-
(2016)
Bioinformatics
, vol.32
, pp. 2847-2849
-
-
Gu, Z.1
Eils, R.2
Schlesner, M.3
|