-
2
-
-
79952063902
-
Analysis of the lung microbiome in the healthy smoker and in COPD
-
Erb-Downward JR, Thompson DL, Han MK, Freeman CM, McCloskey L, Schmidt LA, Young VB, Toews GB, Curtis JL, Sundaram B, Martinez FJ, Huffnagle GB. Analysis of the lung microbiome in the healthy smoker and in COPD. PLoS One 2011, 6:e16384.
-
(2011)
PLoS One
, vol.6
, pp. e16384
-
-
Erb-Downward, J.R.1
Thompson, D.L.2
Han, M.K.3
Freeman, C.M.4
McCloskey, L.5
Schmidt, L.A.6
Young, V.B.7
Toews, G.B.8
Curtis, J.L.9
Sundaram, B.10
Martinez, F.J.11
Huffnagle, G.B.12
-
3
-
-
77649119443
-
Disordered microbial communities in asthmatic airways
-
Hilty M, Burke C, Pedro H, Cardenas P, Bush A, Bossley C, Davies J, Ervine A, Poulter L, Pachter L, Moffatt MF, Cookson WO. Disordered microbial communities in asthmatic airways. PLoS One 2010, 5:e8578.
-
(2010)
PLoS One
, vol.5
, pp. e8578
-
-
Hilty, M.1
Burke, C.2
Pedro, H.3
Cardenas, P.4
Bush, A.5
Bossley, C.6
Davies, J.7
Ervine, A.8
Poulter, L.9
Pachter, L.10
Moffatt, M.F.11
Cookson, W.O.12
-
4
-
-
84877899252
-
Comparison of the respiratory microbiome in healthy nonsmokers and smokers
-
Morris A, Beck JM, Schloss PD, Campbell TB, Crothers K, Curtis JL, Flores SC, Fontenot AP, Ghedin E, Huang L, Jablonski K, Kleerup E, Lynch SV, Sodergren E, Twigg H, Young VB, Bassis CM, Venkataraman A, Schmidt TM, Weinstock GM. Comparison of the respiratory microbiome in healthy nonsmokers and smokers. Am J Respir Crit Care Med 2013, 187:1067-1075.
-
(2013)
Am J Respir Crit Care Med
, vol.187
, pp. 1067-1075
-
-
Morris, A.1
Beck, J.M.2
Schloss, P.D.3
Campbell, T.B.4
Crothers, K.5
Curtis, J.L.6
Flores, S.C.7
Fontenot, A.P.8
Ghedin, E.9
Huang, L.10
Jablonski, K.11
Kleerup, E.12
Lynch, S.V.13
Sodergren, E.14
Twigg, H.15
Young, V.B.16
Bassis, C.M.17
Venkataraman, A.18
Schmidt, T.M.19
Weinstock, G.M.20
more..
-
5
-
-
84883319452
-
Interkingdom signaling induces Streptococcus pneumoniae biofilm dispersion and transition from asymptomatic colonization to disease
-
Marks LR, Davidson BA, Knight PR, Hakansson AP. Interkingdom signaling induces Streptococcus pneumoniae biofilm dispersion and transition from asymptomatic colonization to disease. MBio 2013, 4. doi:10.1128/mBio.00438-13.
-
(2013)
MBio
, vol.4
-
-
Marks, L.R.1
Davidson, B.A.2
Knight, P.R.3
Hakansson, A.P.4
-
6
-
-
84877878844
-
Widespread colonization of the lung by Tropheryma whipplei in HIV infection
-
Lozupone C, Cota-Gomez A, Palmer BE, Linderman DJ, Charlson ES, Sodergren E, Mitreva M, Abubucker S, Martin J, Yao G, Campbell TB, Flores SC, Ackerman G, Stombaugh J, Ursell L, Beck JM, Curtis JL, Young VB, Lynch SV, Huang L, Weinstock GM, Knox KS, Twigg H, Morris A, Ghedin E, Bushman FD, Collman RG, Knight R, Fontenot AP. Widespread colonization of the lung by Tropheryma whipplei in HIV infection. Am J Respir Crit Care Med 2013, 187:1110-1117.
-
(2013)
Am J Respir Crit Care Med
, vol.187
, pp. 1110-1117
-
-
Lozupone, C.1
Cota-Gomez, A.2
Palmer, B.E.3
Linderman, D.J.4
Charlson, E.S.5
Sodergren, E.6
Mitreva, M.7
Abubucker, S.8
Martin, J.9
Yao, G.10
Campbell, T.B.11
Flores, S.C.12
Ackerman, G.13
Stombaugh, J.14
Ursell, L.15
Beck, J.M.16
Curtis, J.L.17
Young, V.B.18
Lynch, S.V.19
Huang, L.20
Weinstock, G.M.21
Knox, K.S.22
Twigg, H.23
Morris, A.24
Ghedin, E.25
Bushman, F.D.26
Collman, R.G.27
Knight, R.28
Fontenot, A.P.29
more..
-
7
-
-
84924172977
-
Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation
-
Segal LN, Alekseyenko AV, Clemente JC, Kulkarni R, Wu B, Chen H, Berger KI, Goldring RM, Rom WN, Blaser MJ, Weiden MD. Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation. Microbiome 2013, 1:19.
-
(2013)
Microbiome
, vol.1
, pp. 19
-
-
Segal, L.N.1
Alekseyenko, A.V.2
Clemente, J.C.3
Kulkarni, R.4
Wu, B.5
Chen, H.6
Berger, K.I.7
Goldring, R.M.8
Rom, W.N.9
Blaser, M.J.10
Weiden, M.D.11
-
8
-
-
34447125026
-
Pneumonia after lung transplantation in the RESITRA Cohort: a multicenter prospective study
-
Aguilar-Guisado M, Givalda J, Ussetti P, Ramos A, Morales P, Blanes M, Bou G, de la Torre-Cisneros J, Roman A, Borro JM, Lama R, Cisneros JM. Pneumonia after lung transplantation in the RESITRA Cohort: a multicenter prospective study. Am J Transplant 2007, 7:1989-1996.
-
(2007)
Am J Transplant
, vol.7
, pp. 1989-1996
-
-
Aguilar-Guisado, M.1
Givalda, J.2
Ussetti, P.3
Ramos, A.4
Morales, P.5
Blanes, M.6
Bou, G.7
de la Torre-Cisneros, J.8
Roman, A.9
Borro, J.M.10
Lama, R.11
Cisneros, J.M.12
-
9
-
-
0029976211
-
Diagnostic yield and therapeutic impact of flexible bronchoscopy in lung transplant recipients
-
Chan CC, Abi-Saleh WJ, Arroliga AC, Stillwell PC, Kirby TJ, Gordon SM, Petras RE, Mehta AC. Diagnostic yield and therapeutic impact of flexible bronchoscopy in lung transplant recipients. J Heart Lung Transplant 1996, 15:196-205.
-
(1996)
J Heart Lung Transplant
, vol.15
, pp. 196-205
-
-
Chan, C.C.1
Abi-Saleh, W.J.2
Arroliga, A.C.3
Stillwell, P.C.4
Kirby, T.J.5
Gordon, S.M.6
Petras, R.E.7
Mehta, A.C.8
-
10
-
-
13644269309
-
Guidelines for the management of adults with hospital-acquired, ventilator-associated, and healthcare-associated pneumonia
-
Society AT. Guidelines for the management of adults with hospital-acquired, ventilator-associated, and healthcare-associated pneumonia. Am J Respir Crit Care Med 2005, 171:388-416.
-
(2005)
Am J Respir Crit Care Med
, vol.171
, pp. 388-416
-
-
Society, A.T.1
-
11
-
-
84901320562
-
Changes in the lung microbiome following lung transplantation include the emergence of two distinct Pseudomonas species with distinct clinical associations
-
Dickson RP, Erb-Downward JR, Freeman CM, Walker N, Scales BS, Beck JM, Martinez FJ, Curtis JL, Lama VN, Huffnagle GB. Changes in the lung microbiome following lung transplantation include the emergence of two distinct Pseudomonas species with distinct clinical associations. PLoS One 2014, 9:e97214.
-
(2014)
PLoS One
, vol.9
, pp. e97214
-
-
Dickson, R.P.1
Erb-Downward, J.R.2
Freeman, C.M.3
Walker, N.4
Scales, B.S.5
Beck, J.M.6
Martinez, F.J.7
Curtis, J.L.8
Lama, V.N.9
Huffnagle, G.B.10
-
12
-
-
0031754332
-
Genetic analysis of Escherichia coli biofilm formation: roles of flagella, motility, chemotaxis and type I pili
-
Pratt LA, Kolter R. Genetic analysis of Escherichia coli biofilm formation: roles of flagella, motility, chemotaxis and type I pili. Mol Microbiol 1998, 30:285-293.
-
(1998)
Mol Microbiol
, vol.30
, pp. 285-293
-
-
Pratt, L.A.1
Kolter, R.2
-
13
-
-
84861898547
-
Assessment of microbial diversity in biofilms recovered from endotracheal tubes using culture dependent and independent approaches
-
Vandecandelaere I, Matthijs N, Van Nieuwerburgh F, Deforce D, Vosters P, De Bus L, Nelis HJ, Depuydt P, Coenye T. Assessment of microbial diversity in biofilms recovered from endotracheal tubes using culture dependent and independent approaches. PLoS One 2012, 7:e38401.
-
(2012)
PLoS One
, vol.7
, pp. e38401
-
-
Vandecandelaere, I.1
Matthijs, N.2
Van Nieuwerburgh, F.3
Deforce, D.4
Vosters, P.5
De Bus, L.6
Nelis, H.J.7
Depuydt, P.8
Coenye, T.9
-
14
-
-
0031970701
-
Initiation of biofilm formation in Pseudomonas fluorescens WCS365 proceeds via multiple, convergent signalling pathways: a genetic analysis
-
O'Toole GA, Kolter R. Initiation of biofilm formation in Pseudomonas fluorescens WCS365 proceeds via multiple, convergent signalling pathways: a genetic analysis. Mol Microbiol 1998, 28:449-461.
-
(1998)
Mol Microbiol
, vol.28
, pp. 449-461
-
-
O'Toole, G.A.1
Kolter, R.2
-
15
-
-
0031741638
-
Invasion of human oral epithelial cells by Prevotella intermedia
-
Dorn BR, Leung K-P, Progulske-Fox A. Invasion of human oral epithelial cells by Prevotella intermedia. Infect Immun 1998, 66:6054-6057.
-
(1998)
Infect Immun
, vol.66
, pp. 6054-6057
-
-
Dorn, B.R.1
Leung, K.-P.2
Progulske-Fox, A.3
-
16
-
-
77955300028
-
The clinical Pseudomonas fluorescens MFN1032 strain exerts a cytotoxic effect on epithelial intestinal cells and induces interleukin-8 via the AP-1 signaling pathway
-
Madi A, Lakhdari O, Blottière HM, Guyard-Nicodème M, Le Roux K, Groboillot A, Svinareff P, Doré J, Orange N, Feuilloley MG. The clinical Pseudomonas fluorescens MFN1032 strain exerts a cytotoxic effect on epithelial intestinal cells and induces interleukin-8 via the AP-1 signaling pathway. BMC Microbiol 2010, 10:215.
-
(2010)
BMC Microbiol
, vol.10
, pp. 215
-
-
Madi, A.1
Lakhdari, O.2
Blottière, H.M.3
Guyard-Nicodème, M.4
Le Roux, K.5
Groboillot, A.6
Svinareff, P.7
Doré, J.8
Orange, N.9
Feuilloley, M.G.10
-
18
-
-
84867588283
-
Candida albicans and bacterial microbiota interactions in the cecum during recolonization following broad-spectrum antibiotic therapy
-
Mason KL, Erb Downward JR, Mason KD, Falkowski NR, Eaton KA, Kao JY, Young VB, Huffnagle GB. Candida albicans and bacterial microbiota interactions in the cecum during recolonization following broad-spectrum antibiotic therapy. Infect Immun 2012, 80:3371-3380.
-
(2012)
Infect Immun
, vol.80
, pp. 3371-3380
-
-
Mason, K.L.1
Erb Downward, J.R.2
Mason, K.D.3
Falkowski, N.R.4
Eaton, K.A.5
Kao, J.Y.6
Young, V.B.7
Huffnagle, G.B.8
-
19
-
-
80053122563
-
Topographical continuity of bacterial populations in the healthy human respiratory tract
-
Charlson ES, Bittinger K, Haas AR, Fitzgerald AS, Frank I, Yadav A, Bushman FD, Collman RG. Topographical continuity of bacterial populations in the healthy human respiratory tract. Am J Respir Crit Care Med 2011, 184:957-963.
-
(2011)
Am J Respir Crit Care Med
, vol.184
, pp. 957-963
-
-
Charlson, E.S.1
Bittinger, K.2
Haas, A.R.3
Fitzgerald, A.S.4
Frank, I.5
Yadav, A.6
Bushman, F.D.7
Collman, R.G.8
-
20
-
-
77249163771
-
Metagenomic analyses reveal antibiotic-induced temporal and spatial changes in intestinal microbiota with associated alterations in immune cell homeostasis
-
Hill DA, Hoffmann C, Abt MC, Du Y, Kobuley D, Kirn TJ, Bushman FD, Artis D. Metagenomic analyses reveal antibiotic-induced temporal and spatial changes in intestinal microbiota with associated alterations in immune cell homeostasis. Mucosal Immunol 2009, 3:148-158.
-
(2009)
Mucosal Immunol
, vol.3
, pp. 148-158
-
-
Hill, D.A.1
Hoffmann, C.2
Abt, M.C.3
Du, Y.4
Kobuley, D.5
Kirn, T.J.6
Bushman, F.D.7
Artis, D.8
-
21
-
-
0027509645
-
Structure of the 16 S ribosomal RNA of the thermophilic cyanobacterium Chlorogloeopsis HTF ('Mastigocladus laminosus HTF') strain PCC7518, and phylogenetic analysis
-
Wilmotte A, Van der Auwera G, De Wachter R. Structure of the 16 S ribosomal RNA of the thermophilic cyanobacterium Chlorogloeopsis HTF ('Mastigocladus laminosus HTF') strain PCC7518, and phylogenetic analysis. FEBS Lett 1993, 317:96-100.
-
(1993)
FEBS Lett
, vol.317
, pp. 96-100
-
-
Wilmotte, A.1
Van der Auwera, G.2
De Wachter, R.3
-
22
-
-
84857566372
-
High-throughput sequencing of PCR products tagged with universal primers using 454 life sciences systems
-
Chapter 7 Unit 7.5
-
Daigle D, Simen BB, Pochart P. High-throughput sequencing of PCR products tagged with universal primers using 454 life sciences systems. Curr Protoc Mol Biol 2011, Chapter 7:Unit 7.5. doi:10.1002/0471142727.mb0705s96.
-
(2011)
Curr Protoc Mol Biol
-
-
Daigle, D.1
Simen, B.B.2
Pochart, P.3
-
23
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 2009, 75:7537-7541.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
Sahl, J.W.11
Stres, B.12
Thallinger, G.G.13
Van Horn, D.J.14
Weber, C.F.15
-
24
-
-
84938483978
-
-
Vienna, Austria: R Foundation for Statistical Computing, R Core Team
-
R Core Team R: a language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing, http://www.R-project.org, R Core Team.
-
-
-
-
25
-
-
79958234181
-
Vegan: Community Ecology Package. R package version 2.0-4
-
Oksanen JF, Blanchet G, Kindt R, Legendre P, Minchin PR, O'Hara RB, Simpson GL, Solymos P, Stevens MHH, Wagner H. vegan: Community Ecology Package. R package version 2.0-4. http://CRAN.R-project.org/package=vegan.
-
-
-
Oksanen, J.F.1
Blanchet, G.2
Kindt, R.3
Legendre, P.4
Minchin, P.R.5
O'Hara, R.B.6
Simpson, G.L.7
Solymos, P.8
Stevens, M.H.H.9
Wagner, H.10
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