메뉴 건너뛰기




Volumn 12, Issue 10, 2015, Pages 1561-1571

Rationale and design of the genomic research in alpha-1 antitrypsin deficiency and sarcoidosis (GRADS) Study: Sarcoidosis protocol

(18)  Moller, David R a   Koth, Laura L b   Maier, Lisa A c,d   Morris, Alison e   Drake, Wonder f   Rossman, Milton g   Leader, Joseph K e   Collman, Ronald G g   Hamzeh, Nabeel c,d   Sweiss, Nadera J h   Zhang, Yingze e   O'Neal, Scott j   Senior, Robert M k   Becich, Michael e   Hochheiser, Harry S e   Kaminski, Naftali i   Wisniewski, Stephen R j   Gibson, Kevin F e  


Author keywords

Bronchoalveolar lavage; Lung; Microbiome; Phenotype; Transcriptome

Indexed keywords

BIOLOGICAL MARKER;

EID: 84943656441     PISSN: 23256621     EISSN: None     Source Type: Journal    
DOI: 10.1513/AnnalsATS.201503-172OT     Document Type: Article
Times cited : (64)

References (68)
  • 1
    • 0033172779 scopus 로고    scopus 로고
    • Statement on sarcoidosis: Joint Statement of the American Thoracic Society (ATS), the European Respiratory Society (ERS) and the World Association of Sarcoidosis and Other Granulomatous Disorders (WASOG) adopted by the ATS Board of Directors and by the ERS Executive Committee, February 1999
    • Statement on sarcoidosis: Joint Statement of the American Thoracic Society (ATS), the European Respiratory Society (ERS) and the World Association of Sarcoidosis and Other Granulomatous Disorders (WASOG) adopted by the ATS Board of Directors and by the ERS Executive Committee, February 1999. Am J Respir Crit Care Med 1999;160:736-755.
    • (1999) Am J Respir Crit Care Med , vol.160 , pp. 736-755
  • 2
    • 52049092682 scopus 로고    scopus 로고
    • Worlds within worlds: Evolution of the vertebrate gut microbiota
    • Ley RE, Lozupone CA, Hamady M, Knight R, Gordon JI. Worlds within worlds: evolution of the vertebrate gut microbiota. Nat Rev 2008;6: 776-788.
    • (2008) Nat Rev , vol.6 , pp. 776-788
    • Ley, R.E.1    Lozupone, C.A.2    Hamady, M.3    Knight, R.4    Gordon, J.I.5
  • 5
    • 84965085549 scopus 로고
    • Prognosis of intrathoracic sarcoidosis in England: A review of 136 cases after five years observation
    • Scadding JG. Prognosis of intrathoracic sarcoidosis in England: a review of 136 cases after five years observation. BMJ 1961;2: 1165-1172.
    • (1961) BMJ , vol.2 , pp. 1165-1172
    • Scadding, J.G.1
  • 6
    • 80051471196 scopus 로고    scopus 로고
    • Sarcoidosis-scientific progress and clinical challenges
    • Chen ES, Moller DR. Sarcoidosis-scientific progress and clinical challenges. Nat Rev Rheumatol 2011;7:457-467.
    • (2011) Nat Rev Rheumatol , vol.7 , pp. 457-467
    • Chen, E.S.1    Moller, D.R.2
  • 10
    • 38449083335 scopus 로고    scopus 로고
    • Molecular evidence for the role of mycobacteria in sarcoidosis: A meta-analysis
    • Gupta D, Agarwal R, Aggarwal AN, Jindal SK. Molecular evidence for the role of mycobacteria in sarcoidosis: a meta-analysis. Eur Respir J 2007;30:508-516.
    • (2007) Eur Respir J , vol.30 , pp. 508-516
    • Gupta, D.1    Agarwal, R.2    Aggarwal, A.N.3    Jindal, S.K.4
  • 11
    • 20144369084 scopus 로고    scopus 로고
    • Mycobacterial catalase-peroxidase is a tissue antigen and target of the adaptive immune response in systemic sarcoidosis
    • [Published erratum appears in J Exp Med 2005; 202:721.]
    • Song Z, Marzilli L, Greenlee BM, Chen ES, Silver RF, Askin FB, Teirstein AS, Zhang Y, Cotter RJ, Moller DR. Mycobacterial catalase-peroxidase is a tissue antigen and target of the adaptive immune response in systemic sarcoidosis. J Exp Med 2005;201:755-767. [Published erratum appears in J Exp Med 2005; 202:721.]
    • (2005) J Exp Med , vol.201 , pp. 755-767
    • Song, Z.1    Marzilli, L.2    Greenlee, B.M.3    Chen, E.S.4    Silver, R.F.5    Askin, F.B.6    Teirstein, A.S.7    Zhang, Y.8    Cotter, R.J.9    Moller, D.R.10
  • 17
    • 77249153663 scopus 로고    scopus 로고
    • Mycobacterial ESAT-6 and katG are recognized by sarcoidosis CD41 T cells when presented by the American sarcoidosis susceptibility allele, DRB1∗1101
    • Oswald-Richter K, Sato H, Hajizadeh R, Shepherd BE, Sidney J, Sette A, Newman LS, Drake WP. Mycobacterial ESAT-6 and katG are recognized by sarcoidosis CD41 T cells when presented by the American sarcoidosis susceptibility allele, DRB1∗1101. J Clin Immunol 2010;30:157-166.
    • (2010) J Clin Immunol , vol.30 , pp. 157-166
    • Oswald-Richter, K.1    Sato, H.2    Hajizadeh, R.3    Shepherd, B.E.4    Sidney, J.5    Sette, A.6    Newman, L.S.7    Drake, W.P.8
  • 18
    • 34547406740 scopus 로고    scopus 로고
    • Mycobacterial heat shock protein-induced blood T lymphocytes subsets and cytokine pattern: Comparison of sarcoidosis with tuberculosis and healthy controls
    • Dubaniewicz A, Trzonkowski P, Dubaniewicz-Wybieralska M, Dubaniewicz A, Singh M, Mys̈liwski A. Mycobacterial heat shock protein-induced blood T lymphocytes subsets and cytokine pattern: comparison of sarcoidosis with tuberculosis and healthy controls. Respirology 2007;12:346-354.
    • (2007) Respirology , vol.12 , pp. 346-354
    • Dubaniewicz, A.1    Trzonkowski, P.2    Dubaniewicz-Wybieralska, M.3    Dubaniewicz, A.4    Singh, M.5    Mys̈liwski, A.6
  • 22
    • 84921389556 scopus 로고    scopus 로고
    • Role of Propionibacterium acnes in sarcoidosis: A meta-analysis
    • Zhou Y, Hu Y, Li H. Role of Propionibacterium acnes in sarcoidosis: a meta-analysis. Sarcoidosis Vasc Diffuse Lung Dis 2013;30:262-267.
    • (2013) Sarcoidosis Vasc Diffuse Lung Dis , vol.30 , pp. 262-267
    • Zhou, Y.1    Hu, Y.2    Li, H.3
  • 23
    • 0033770698 scopus 로고    scopus 로고
    • Proliferative response of peripheral blood mononuclear cells and levels of antibody to recombinant protein from Propionibacterium acnes DNA expression library in Japanese patients with sarcoidosis
    • Ebe Y, Ikushima S, Yamaguchi T, Kohno K, Azuma A, Sato K, Ishige I, Usui Y, Takemura T, Eishi Y. Proliferative response of peripheral blood mononuclear cells and levels of antibody to recombinant protein from Propionibacterium acnes DNA expression library in Japanese patients with sarcoidosis. Sarcoidosis Vasc Diffuse Lung Dis 2000;17:256-265.
    • (2000) Sarcoidosis Vasc Diffuse Lung Dis , vol.17 , pp. 256-265
    • Ebe, Y.1    Ikushima, S.2    Yamaguchi, T.3    Kohno, K.4    Azuma, A.5    Sato, K.6    Ishige, I.7    Usui, Y.8    Takemura, T.9    Eishi, Y.10
  • 24
    • 77955043019 scopus 로고    scopus 로고
    • The etiologic role of infectious antigens in sarcoidosis pathogenesis
    • Oswald-Richter KA, Drake WP. The etiologic role of infectious antigens in sarcoidosis pathogenesis. Semin Respir Crit Care Med 2010;31: 375-379.
    • (2010) Semin Respir Crit Care Med , vol.31 , pp. 375-379
    • Oswald-Richter, K.A.1    Drake, W.P.2
  • 28
    • 0032192790 scopus 로고    scopus 로고
    • Molecular biological access to the chemistry of unknown soil microbes: A new frontier for natural products
    • Handelsman J,RondonMR, BradySF, Clardy J, GoodmanRM. Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products. Chem Biol 1998;5:R245-R249.
    • (1998) Chem Biol , vol.5 , pp. R245-R249
    • Handelsman, J.1    Rondon, M.R.2    Brady, S.F.3    Clardy, J.4    Goodman, R.M.5
  • 29
    • 0035344248 scopus 로고    scopus 로고
    • Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods
    • Smit E, Leeflang P, Gommans S, van den Broek J, van Mil S, Wernars K. Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods. Appl Environ Microbiol 2001;67: 2284-2291.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 2284-2291
    • Smit, E.1    Leeflang, P.2    Gommans, S.3    Van Den Broek, J.4    Van Mil, S.5    Wernars, K.6
  • 31
    • 84872034370 scopus 로고    scopus 로고
    • Chapter 12: Human microbiome analysis
    • Morgan XC, Huttenhower C. Chapter 12: human microbiome analysis. PLoS Comput Biol 2012;8:e1002808 .
    • (2012) PLoS Comput Biol , vol.8 , pp. e1002808
    • Morgan, X.C.1    Huttenhower, C.2
  • 32
    • 0033456272 scopus 로고    scopus 로고
    • Bacterial diversity within the human subgingival crevice
    • Kroes I, Lepp PW, Relman DA. Bacterial diversity within the human subgingival crevice. Proc Natl Acad Sci USA 1999;96:14547-14552.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 14547-14552
    • Kroes, I.1    Lepp, P.W.2    Relman, D.A.3
  • 34
    • 33847305053 scopus 로고    scopus 로고
    • Molecular analysis of human forearm superficial skin bacterial biota
    • Gao Z, Tseng CH, Pei Z, Blaser MJ. Molecular analysis of human forearm superficial skin bacterial biota. Proc Natl Acad Sci USA 2007;104:2927-2932.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 2927-2932
    • Gao, Z.1    Tseng, C.H.2    Pei, Z.3    Blaser, M.J.4
  • 39
    • 33750956239 scopus 로고    scopus 로고
    • Differences between tissue-associated intestinal microfloras of patients with Crohns disease and ulcerative colitis
    • Gophna U, Sommerfeld K, Gophna S, Doolittle WF, Veldhuyzen van Zanten SJ. Differences between tissue-associated intestinal microfloras of patients with Crohns disease and ulcerative colitis. J Clin Microbiol 2006;44:4136-4141.
    • (2006) J Clin Microbiol , vol.44 , pp. 4136-4141
    • Gophna, U.1    Sommerfeld, K.2    Gophna, S.3    Doolittle, W.F.4    Veldhuyzen Van Zanten, S.J.5
  • 40
    • 35348857386 scopus 로고    scopus 로고
    • Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
    • Frank DN, St Amand AL, Feldman RA, Boedeker EC, Harpaz N, Pace NR. Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc Natl Acad Sci USA 2007;104:13780-13785.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 13780-13785
    • Frank, D.N.1    St Amand, A.L.2    Feldman, R.A.3    Boedeker, E.C.4    Harpaz, N.5    Pace, N.R.6
  • 41
    • 79952748287 scopus 로고    scopus 로고
    • Unravelling the effects of the environment and host genotype on the gut microbiome
    • Spor A, Koren O, Ley R. Unravelling the effects of the environment and host genotype on the gut microbiome. Nat Rev Microbiol 2011;9: 279-290.
    • (2011) Nat Rev Microbiol , vol.9 , pp. 279-290
    • Spor, A.1    Koren, O.2    Ley, R.3
  • 47
    • 34548514438 scopus 로고    scopus 로고
    • Pan-viral screening of respiratory tract infections in adults with and without asthma reveals unexpected human coronavirus and human rhinovirus diversity
    • Kistler A, Avila PC, Rouskin S, Wang D, Ward T, Yagi S, Schnurr D, Ganem D, DeRisi JL, Boushey HA. Pan-viral screening of respiratory tract infections in adults with and without asthma reveals unexpected human coronavirus and human rhinovirus diversity. J Infect Dis 2007;196:817-825.
    • (2007) J Infect Dis , vol.196 , pp. 817-825
    • Kistler, A.1    Avila, P.C.2    Rouskin, S.3    Wang, D.4    Ward, T.5    Yagi, S.6    Schnurr, D.7    Ganem, D.8    DeRisi, J.L.9    Boushey, H.A.10
  • 62
    • 0032933171 scopus 로고    scopus 로고
    • Defining organ involvement in sarcoidosis: The ACCESS proposed instrument. ACCESS Research Group-A Case Control Etiologic Study of Sarcoidosis
    • Judson MA, Baughman RP, Teirstein AS, Terrin ML, Yeager H Jr. Defining organ involvement in sarcoidosis: the ACCESS proposed instrument. ACCESS Research Group-A Case Control Etiologic Study of Sarcoidosis. Sarcoidosis Vasc Diffuse Lung Dis 1999;16: 75-86.
    • (1999) Sarcoidosis Vasc Diffuse Lung Dis , vol.16 , pp. 75-86
    • Judson, M.A.1    Baughman, R.P.2    Teirstein, A.S.3    Terrin, M.L.4    Yeager, H.5
  • 65
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Series B Stat Methodol 1995;57:289-300.
    • (1995) J R Stat Soc Series B Stat Methodol , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 66
    • 24944463801 scopus 로고    scopus 로고
    • Analysis of microarray experiments for pulmonary fibrosis
    • Davé NB, Kaminski N. Analysis of microarray experiments for pulmonary fibrosis. Methods Mol Med 2005;117:333-358.
    • (2005) Methods Mol Med , vol.117 , pp. 333-358
    • Davé, N.B.1    Kaminski, N.2
  • 67
    • 0032696774 scopus 로고    scopus 로고
    • Design of a case control etiologic study of sarcoidosis (ACCESS)
    • ACCESS Research Group
    • ACCESS Research Group. Design of a case control etiologic study of sarcoidosis (ACCESS). J Clin Epidemiol 1999;52:1173-1186.
    • (1999) J Clin Epidemiol , vol.52 , pp. 1173-1186
  • 68
    • 71949107902 scopus 로고    scopus 로고
    • Development of the GerdQ, a tool for the diagnosis and management of gastro-oesophageal reflux disease in primary care
    • Jones R, Junghard O, Dent J, Vakil N, Halling K, Wernersson B, Lind T. Development of the GerdQ, a tool for the diagnosis and management of gastro-oesophageal reflux disease in primary care. Aliment Pharmacol Ther 2009;30:1030-1038.
    • (2009) Aliment Pharmacol Ther , vol.30 , pp. 1030-1038
    • Jones, R.1    Junghard, O.2    Dent, J.3    Vakil, N.4    Halling, K.5    Wernersson, B.6    Lind, T.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.