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Volumn 6, Issue , 2017, Pages

Design principles of autocatalytic cycles constrain enzyme kinetics and force low substrate saturation at flux branch points

Author keywords

[No Author keywords available]

Indexed keywords

CARBON METABOLISM; CATALYSIS; ENZYME KINETICS; GENE OVEREXPRESSION; KINETIC PARAMETERS; METABOLITE; PROTEOMICS; ENZYMOLOGY; ESCHERICHIA COLI; GENE EXPRESSION REGULATION; GENETICS; KINETICS; METABOLIC FLUX ANALYSIS; METABOLISM;

EID: 85014611037     PISSN: None     EISSN: 2050084X     Source Type: Journal    
DOI: 10.7554/eLife.20667.001     Document Type: Article
Times cited : (76)

References (34)
  • 3
    • 84962212496 scopus 로고    scopus 로고
    • Global characterization of in vivo enzyme catalytic rates and their correspondence to in vitro kcat measurements
    • 26951675
    • Davidi D, Noor E, Liebermeister W, Bar-Even A, Flamholz A, Tummler K, Barenholz U, Goldenfeld M, Shlomi T, Milo R. 2016. Global characterization of in vivo enzyme catalytic rates and their correspondence to in vitro kcat measurements. PNAS 113:3401–3406. doi: 10.1073/pnas.1514240113, PMID: 26951675
    • (2016) PNAS , vol.113 , pp. 3401-3406
    • Davidi, D.1    Noor, E.2    Liebermeister, W.3    Bar-Even, A.4    Flamholz, A.5    Tummler, K.6    Barenholz, U.7    Goldenfeld, M.8    Shlomi, T.9    Milo, R.10
  • 4
    • 33845878007 scopus 로고    scopus 로고
    • Flux control and excess capacity in the enzymes of glycolysis and their relationship to flight metabolism in Drosophila Melanogaster
    • 17159148
    • Eanes WF, Merritt TJ, Flowers JM, Kumagai S, Sezgin E, Zhu CT. 2006. Flux control and excess capacity in the enzymes of glycolysis and their relationship to flight metabolism in Drosophila Melanogaster. PNAS 103: 19413–19418. doi: 10.1073/pnas.0607095104, PMID: 17159148
    • (2006) PNAS , vol.103 , pp. 19413-19418
    • Eanes, W.F.1    Merritt, T.J.2    Flowers, J.M.3    Kumagai, S.4    Sezgin, E.5    Zhu, C.T.6
  • 7
    • 0003356676 scopus 로고    scopus 로고
    • Modelling metabolic pathways and analysing control
    • Bryant J, Burrell M. M, Kruger N. J
    • Fell DA, Thomas S, Poolman MG. 1999. Modelling metabolic pathways and analysing control. In: Bryant J, Burrell M. M, Kruger N. J (Eds). Plant Carbohydrate Biochemistry. p17–27.
    • (1999) Plant Carbohydrate Biochemistry , pp. 17-27
    • Fell, D.1    Thomas, S.2    Poolman, M.G.3
  • 8
    • 0030200309 scopus 로고    scopus 로고
    • Adaptation to life at Micromolar nutrient levels: The regulation of Escherichia coli glucose transport by endoinduction and cAMP
    • 8703508
    • Ferenci T. 1996. Adaptation to life at Micromolar nutrient levels: the regulation of Escherichia coli glucose transport by endoinduction and cAMP. FEMS Microbiology Reviews 18:301–317. doi: 10.1111/j.1574-6976.1996.tb00246.x, PMID: 8703508
    • (1996) FEMS Microbiology Reviews , vol.18 , pp. 301-317
    • Ferenci, T.1
  • 9
    • 84878966835 scopus 로고    scopus 로고
    • Glycolytic strategy as a tradeoff between energy yield and protein cost
    • 23630264
    • Flamholz A, Noor E, Bar-Even A, Liebermeister W, Milo R. 2013. Glycolytic strategy as a tradeoff between energy yield and protein cost. PNAS 110:10039–10044. doi: 10.1073/pnas.1215283110, PMID: 23630264
    • (2013) PNAS , vol.110 , pp. 10039-10044
    • Flamholz, A.1    Noor, E.2    Bar-Even, A.3    Liebermeister, W.4    Milo, R.5
  • 11
    • 84951061481 scopus 로고    scopus 로고
    • Pseudo-transition analysis identifies the key regulators of dynamic metabolic adaptations from Steady-State data
    • 27136056
    • Gerosa L, Haverkorn van Rijsewijk BR, Christodoulou D, Kochanowski K, Schmidt TS, Noor E, Sauer U. 2015. Pseudo-transition analysis identifies the key regulators of dynamic metabolic adaptations from Steady-State data. Cell Systems 1:270–282. doi: 10.1016/j.cels.2015.09.008, PMID: 27136056
    • (2015) Cell Systems , vol.1 , pp. 270-282
    • Gerosa, L.1    Haverkorn Van Rijsewijk, B.R.2    Christodoulou, D.3    Kochanowski, K.4    Schmidt, T.S.5    Noor, E.6    Sauer, U.7
  • 12
    • 1642298923 scopus 로고    scopus 로고
    • Detecting autocatalytic, self-sustaining sets in chemical reaction systems
    • 15038982
    • Hordijk W, Steel M. 2004. Detecting autocatalytic, self-sustaining sets in chemical reaction systems. Journal of Theoretical Biology 227:451–461. doi: 10.1016/j.jtbi.2003.11.020, PMID: 15038982
    • (2004) Journal of Theoretical Biology , vol.227 , pp. 451-461
    • Hordijk, W.1    Steel, M.2
  • 13
    • 85014651965 scopus 로고    scopus 로고
    • Enzyme kinetic equations of irreversible and reversible reactions in metabolism
    • Imperial S, Centelles JJ. 2014. Enzyme kinetic equations of irreversible and reversible reactions in metabolism. Journal of Biosciences and Medicines 02:24–29. doi: 10.4236/jbm.2014.24005
    • (2014) Journal of Biosciences and Medicines , vol.2 , pp. 24-29
    • Imperial, S.1    Centelles, J.J.2
  • 15
    • 0013894468 scopus 로고
    • The role and control of the glyoxylate cycle in Escherichia coli
    • 5337756
    • Kornberg HL. 1966. The role and control of the glyoxylate cycle in Escherichia coli. The Biochemical Journal 99: 1–11. doi: 10.1042/bj0990001, PMID: 5337756
    • (1966) The Biochemical Journal , vol.99 , pp. 1-11
    • Kornberg, H.L.1
  • 17
    • 45549087281 scopus 로고    scopus 로고
    • Computational identification of obligatorily autocatalytic replicators embedded in metabolic networks
    • 18331628
    • Kun A, Papp B, Szathmáry E. 2008. Computational identification of obligatorily autocatalytic replicators embedded in metabolic networks. Genome Biology 9:R51. doi: 10.1186/gb-2008-9-3-r51, PMID: 18331628
    • (2008) Genome Biology , vol.9
    • Kun, A.1    Papp, B.2    Szathmáry, E.3
  • 20
    • 84855668398 scopus 로고    scopus 로고
    • Algal evolution in relation to atmospheric CO2: Carboxylases, carbon-concentrating mechanisms and carbon oxidation cycles
    • 22232762
    • Raven JA, Giordano M, Beardall J, Maberly SC. 2012. Algal evolution in relation to atmospheric CO2: carboxylases, carbon-concentrating mechanisms and carbon oxidation cycles. Philosophical Transactions of the Royal Society B: Biological Sciences 367:493–507. doi: 10.1098/rstb.2011.0212, PMID: 22232762
    • (2012) Philosophical Transactions of the Royal Society B: Biological Sciences , vol.367 , pp. 493-507
    • Raven, J.A.1    Giordano, M.2    Beardall, J.3    Maberly, S.C.4
  • 22
    • 77955298900 scopus 로고    scopus 로고
    • On the stability of metabolic cycles
    • 20673772
    • Reznik E, Segrè D. 2010. On the stability of metabolic cycles. Journal of Theoretical Biology 266:536–549. doi: 10.1016/j.jtbi.2010.07.023, PMID: 20673772
    • (2010) Journal of Theoretical Biology , vol.266 , pp. 536-549
    • Reznik, E.1    Segrè, D.2
  • 23
    • 77954619889 scopus 로고    scopus 로고
    • Signatures of arithmetic simplicity in metabolic network architecture
    • 20369010
    • Riehl WJ, Krapivsky PL, Redner S, Segrè D. 2010. Signatures of arithmetic simplicity in metabolic network architecture. PLoS Computational Biology 6:e1000725. doi: 10.1371/journal.pcbi.1000725, PMID: 20369010
    • (2010) Plos Computational Biology , vol.6
    • Riehl, W.J.1    Krapivsky, P.L.2    Redner, S.3    Segrè, D.4
  • 24
    • 0345060788 scopus 로고    scopus 로고
    • Quantitative evolutionary design of glucose 6-phosphate dehydrogenase expression in human erythrocytes
    • 14614139
    • Salvador A, Savageau MA. 2003. Quantitative evolutionary design of glucose 6-phosphate dehydrogenase expression in human erythrocytes. PNAS 100:14463–14468. doi: 10.1073/pnas.2335687100, PMID: 14614139
    • (2003) PNAS , vol.100 , pp. 14463-14468
    • Salvador, A.1    Savageau, M.A.2
  • 25
    • 33144458377 scopus 로고    scopus 로고
    • Evolution of enzymes in a series is driven by dissimilar functional demands
    • 16461898
    • Salvador A, Savageau MA. 2006. Evolution of enzymes in a series is driven by dissimilar functional demands. PNAS 103:2226–2231. doi: 10.1073/pnas.0510776103, PMID: 16461898
    • (2006) PNAS , vol.103 , pp. 2226-2231
    • Salvador, A.1    Savageau, M.A.2
  • 29
    • 0030926944 scopus 로고    scopus 로고
    • Honeybee flight muscle phosphoglucose isomerase: Matching enzyme capacities to flux requirements at a near-equilibrium reaction
    • 9319107
    • Staples J, Suarez R. 1997. Honeybee flight muscle phosphoglucose isomerase: matching enzyme capacities to flux requirements at a near-equilibrium reaction. The Journal of Experimental Biology 200:1247–1254. PMID: 9319107
    • (1997) The Journal of Experimental Biology , vol.200 , pp. 1247-1254
    • Staples, J.1    Suarez, R.2
  • 31
    • 0030986362 scopus 로고    scopus 로고
    • Relationships between enzymatic flux capacities and metabolic flux rates: Nonequilibrium reactions in muscle glycolysis
    • 9192692
    • Suarez RK, Staples JF, Lighton JR, West TG. 1997. Relationships between enzymatic flux capacities and metabolic flux rates: nonequilibrium reactions in muscle glycolysis. PNAS 94:7065–7069. doi: 10.1073/pnas.94.13.7065, PMID: 9192692
    • (1997) PNAS , vol.94 , pp. 7065-7069
    • Suarez, R.K.1    Staples, J.F.2    Lighton, J.R.3    West, T.G.4
  • 32
    • 0000458809 scopus 로고
    • Enumeration of the elementary circuits of a directed graph
    • Tarjan R. 1973. Enumeration of the elementary circuits of a directed graph. SIAM Journal on Computing 2:211– 216. doi: 10.1137/0202017
    • (1973) SIAM Journal on Computing , vol.2
    • Tarjan, R.1
  • 34
    • 0032478305 scopus 로고    scopus 로고
    • Evolutionary matches of enzyme and transporter capacities to dietary substrate loads in the intestinal brush border
    • PMID: 9482 848
    • Weiss SL, Lee EA, Diamond J. 1998. Evolutionary matches of enzyme and transporter capacities to dietary substrate loads in the intestinal brush border. PNAS 95:2117–2121. doi: 10.1073/pnas.95.5.2117, PMID: 9482 848
    • (1998) PNAS , vol.95 , pp. 2117-2121
    • Weiss, S.L.1    Lee, E.A.2    Diamond, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.