-
1
-
-
0027751663
-
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
8252621
-
Lee RC Feinbaum RL Ambros V: The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell. 1993;75(5):843-54. 8252621 10.1016/0092-8674(93)90529-Y
-
(1993)
Cell
, vol.75
, Issue.5
, pp. 843-54
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
2
-
-
0347444723
-
MicroRNAs: genomics, biogenesis, mechanism, and function
-
14744438
-
Bartel DP: MicroRNAs: genomics, biogenesis, mechanism, and function. Cell. 2004;116(2):281-297. 14744438 10.1016/S0092-8674(04)00045-5
-
(2004)
Cell
, vol.116
, Issue.2
, pp. 281-297
-
-
Bartel, D.P.1
-
3
-
-
33645294070
-
Oncomirs microRNAs with a role in cancer
-
16557279
-
Esquela-Kerscher A Slack FJ: Oncomirs microRNAs with a role in cancer. Nat Rev Cancer. 2006;6(4):259-69. 16557279 10.1038/nrc1840
-
(2006)
Nat Rev Cancer
, vol.6
, Issue.4
, pp. 259-69
-
-
Esquela-Kerscher, A.1
Slack, F.J.2
-
4
-
-
84885638952
-
An androgen receptor-microrna-29a regulatory circuitry in mouse epididymis
-
23960076, 3795238
-
Ma W Hu S Yao G: An androgen receptor-microrna-29a regulatory circuitry in mouse epididymis. J Biol Chem. 2013;288(41):29369-81. 23960076 10.1074/jbc.M113.454066 3795238
-
(2013)
J Biol Chem
, vol.288
, Issue.41
, pp. 29369-81
-
-
Ma, W.1
Hu, S.2
Yao, G.3
-
5
-
-
7044285911
-
Probing microRNAs with microarrays: tissue specificity and functional inference
-
15496526, 1370668
-
Babak T Zhang W Morris Q: Probing microRNAs with microarrays: tissue specificity and functional inference. RNA. 2004;10(11):1813-1819. 15496526 10.1261/rna.7119904 1370668
-
(2004)
RNA
, vol.10
, Issue.11
, pp. 1813-1819
-
-
Babak, T.1
Zhang, W.2
Morris, Q.3
-
6
-
-
33845608588
-
Identification of differentially expressed microRNAs by microarray: a possible role for microRNA genes in pituitary adenomas
-
17111382
-
Bottoni A Zatelli MC Ferracin M: Identification of differentially expressed microRNAs by microarray: a possible role for microRNA genes in pituitary adenomas. J Cell Physiol. 2007;210(2):370-377. 17111382 10.1002/jcp.20832
-
(2007)
J Cell Physiol
, vol.210
, Issue.2
, pp. 370-377
-
-
Bottoni, A.1
Zatelli, M.C.2
Ferracin, M.3
-
7
-
-
79955969564
-
Preferential regulation of miRNA targets by environmental chemicals in the human genome
-
21592377, 3118786
-
Wu X Song Y: Preferential regulation of miRNA targets by environmental chemicals in the human genome. BMC Genomics. 2011;12(1):244. 21592377 10.1186/1471-2164-12-244 3118786
-
(2011)
BMC Genomics
, vol.12
, Issue.1
, pp. 244
-
-
Wu, X.1
Song, Y.2
-
8
-
-
18744396337
-
Frequent deletions and downregulation of micro-RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia
-
12434020, 137750
-
Calin GA Dumitru CD Shimizu M: Frequent deletions and downregulation of micro-RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia. Proc Natl Acad Sci U S A. 2002;99(24):15524-9. 12434020 10.1073/pnas.242606799 137750
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, Issue.24
, pp. 15524-9
-
-
Calin, G.A.1
Dumitru, C.D.2
Shimizu, M.3
-
9
-
-
84900345484
-
Application of microRNA in diagnosis and treatment of ovarian cancer
-
24822185, 4009316
-
Banno K Yanokura M Iida M: Application of microRNA in diagnosis and treatment of ovarian cancer. BioMed Res Int. 2014;2014:232817. 24822185 10.1155/2014/232817 4009316
-
(2014)
BioMed Res Int
, vol.2014
, pp. 232817
-
-
Banno, K.1
Yanokura, M.2
Iida, M.3
-
10
-
-
58249088751
-
MicroRNAs: target recognition and regulatory functions
-
19167326, 3794896
-
Bartel DP: MicroRNAs: target recognition and regulatory functions. Cell. 2009;136(2):215-33. 19167326 10.1016/j.cell.2009.01.002 3794896
-
(2009)
Cell
, vol.136
, Issue.2
, pp. 215-33
-
-
Bartel, D.P.1
-
11
-
-
84862176128
-
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support
-
22135297, 3245116
-
Vergoulis T Vlachos IS Alexiou P: TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support. Nucleic Acids Res. 2011;40(Database issue):D222-229. 22135297 10.1093/nar/gkr1161 3245116
-
(2011)
Nucleic Acids Res
, vol.40
, Issue.DATABASE ISSUE
, pp. D222-229
-
-
Vergoulis, T.1
Vlachos, I.S.2
Alexiou, P.3
-
12
-
-
77952304446
-
miRSel: automated extraction of associations between microRNAs and genes from the biomedical literature
-
20233441, 2845581
-
Naeem H Küffner R Csaba G: miRSel: automated extraction of associations between microRNAs and genes from the biomedical literature. BMC Bioinformatics. 2010;11:135. 20233441 10.1186/1471-2105-11-135 2845581
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 135
-
-
Naeem, H.1
Küffner, R.2
Csaba, G.3
-
13
-
-
58149179989
-
miR2Disease: a manually curated database for microRNA deregulation in human disease
-
18927107, 2686559
-
Jiang Q Wang Y Hao Y: miR2Disease: a manually curated database for microRNA deregulation in human disease. Nucleic acids Res. 2009;37(Database issue):D98-104. 18927107 10.1093/nar/gkn714 2686559
-
(2009)
Nucleic acids Res
, vol.37
, Issue.DATABASE ISSUE
, pp. D98-104
-
-
Jiang, Q.1
Wang, Y.2
Hao, Y.3
-
14
-
-
77349120755
-
PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes
-
20089154, 2847718
-
Ruepp A Kowarsch A Schmidl D: PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes. Genome Biol. 2010;11(1):R6. 20089154 10.1186/gb-2010-11-1-r6 2847718
-
(2010)
Genome Biol
, vol.11
, Issue.1
, pp. R6
-
-
Ruepp, A.1
Kowarsch, A.2
Schmidl, D.3
-
15
-
-
84867601383
-
A text-mining system for extracting metabolic reactions from full-text articles
-
22823282, 3475109
-
Czarnecki J Nobeli I Smith A: A text-mining system for extracting metabolic reactions from full-text articles. BMC Bioinformatics. 2012;13(1):172. 22823282 10.1186/1471-2105-13-172 3475109
-
(2012)
BMC Bioinformatics
, vol.13
, Issue.1
, pp. 172
-
-
Czarnecki, J.1
Nobeli, I.2
Smith, A.3
-
16
-
-
78651266827
-
miRTarBase: a database curates experimentally validated microRNA-target interactions
-
21071411, 3013699
-
Hsu SD Lin FM Wu WY: miRTarBase: a database curates experimentally validated microRNA-target interactions. Nucleic acids Res. 2011;39(Database issue):D163-9. 21071411 10.1093/nar/gkq1107 3013699
-
(2011)
Nucleic acids Res
, vol.39
, Issue.DATABASE ISSUE
, pp. D163-9
-
-
Hsu, S.D.1
Lin, F.M.2
Wu, W.Y.3
-
17
-
-
84874726726
-
miRCancer: a microRNA-cancer association database constructed by text mining on literature
-
23325619
-
Xie B Ding Q Han H: miRCancer: a microRNA-cancer association database constructed by text mining on literature. Bioinformatics. 2013;29(5):639-44. 23325619 10.1093/bioinformatics/btt014
-
(2013)
Bioinformatics
, vol.29
, Issue.5
, pp. 639-44
-
-
Xie, B.1
Ding, Q.2
Han, H.3
-
18
-
-
51049088874
-
Overview of BioCreative II gene mention recognition
-
18834493, 2559986
-
Smith L Tanabe LK nee Ando RJ: Overview of BioCreative II gene mention recognition. Genome Biol. 2008;9(Suppl 2):S2. 18834493 10.1186/gb-2008-9-s2-s2 2559986
-
(2008)
Genome Biol
, vol.9
, pp. S2
-
-
Smith, L.1
Tanabe, L.K.2
nee Ando, R.J.3
-
19
-
-
80053414432
-
Overview of the BioCreative III Workshop
-
22151647, 3269932
-
Arighi CN Lu Z Krallinger M: Overview of the BioCreative III Workshop. BMC Bioinformatics. 2011;12(Suppl 8):S1. 22151647 10.1186/1471-2105-12-S8-S1 3269932
-
(2011)
BMC Bioinformatics
, vol.12
, pp. S1
-
-
Arighi, C.N.1
Lu, Z.2
Krallinger, M.3
-
20
-
-
84901319167
-
Proceedings of the BioNLP Shared Task 2013 Workshop
-
Reference Source, Association for Computational Linguistics, Sofia, Bulgaria,.
-
Nedellec C Bossy R Kim JD: Proceedings of the BioNLP Shared Task 2013 Workshop. Association for Computational Linguistics, Sofia, Bulgaria,2013. Reference Source
-
(2013)
-
-
Nedellec, C.1
Bossy, R.2
Kim, J.D.3
-
21
-
-
85091074073
-
Proceedings of BioNLP Shared Task 2011 Workshop
-
Reference Source, Association for Computational Linguistics, Portland, Oregon, USA,.
-
Tsujii J Kim JD Pyysalo S: Proceedings of BioNLP Shared Task 2011 Workshop. Association for Computational Linguistics, Portland, Oregon, USA,2011. Reference Source
-
(2011)
-
-
Tsujii, J.1
Kim, J.D.2
Pyysalo, S.3
-
22
-
-
85091099253
-
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task
-
Reference Source, Association for Computational Linguistics, Boulder, Colorado,.
-
Tsujii J: Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task. Association for Computational Linguistics, Boulder, Colorado,2009. Reference Source
-
(2009)
-
-
Tsujii, J.1
-
23
-
-
77956547722
-
An in silico analysis of microRNAs: mining the miRNAome
-
20539892
-
Murray BS Choe SE Woods M: An in silico analysis of microRNAs: mining the miRNAome. Mol Biosyst. 2010;6(10):1853-62. 20539892 10.1039/c003961f
-
(2010)
Mol Biosyst
, vol.6
, Issue.10
, pp. 1853-62
-
-
Murray, B.S.1
Choe, S.E.2
Woods, M.3
-
24
-
-
79959805164
-
miRWalk--database: prediction of possible miRNA binding sites by “walking” the genes of three genomes
-
21605702
-
Dweep H Sticht C Pandey P: miRWalk--database: prediction of possible miRNA binding sites by “walking” the genes of three genomes. J Biomed Inform. 2011;44(5):839-47. 21605702 10.1016/j.jbi.2011.05.002
-
(2011)
J Biomed Inform
, vol.44
, Issue.5
, pp. 839-47
-
-
Dweep, H.1
Sticht, C.2
Pandey, P.3
-
25
-
-
44649108373
-
Comparative analysis of five protein-protein interaction corpora
-
18426551, 2349296
-
Pyysalo S Airola A Heimonen J: Comparative analysis of five protein-protein interaction corpora. BMC Bioinformatics. 2008;9(Suppl 3):S6. 18426551 10.1186/1471-2105-9-S3-S6 2349296
-
(2008)
BMC Bioinformatics
, vol.9
, pp. S6
-
-
Pyysalo, S.1
Airola, A.2
Heimonen, J.3
-
26
-
-
85119978248
-
Knowtator: A Protégé plug-in for annotated corpus construction
-
Proceedings of the 2006 Conference of the North American Chapter of the Association for Computational Linguistics on Human Language Technology: companion volume: demonstrations, In
-
Ogren PV: Knowtator: A Protégé plug-in for annotated corpus construction. In Proceedings of the 2006 Conference of the North American Chapter of the Association for Computational Linguistics on Human Language Technology: companion volume: demonstrations. New York, Association for Computational Linguistics.2006;273-275. 10.3115/1225785.1225791
-
(2006)
, pp. 273-275
-
-
Ogren, P.V.1
-
27
-
-
0041877504
-
The evolution of Protégé: an environment for knowledge-based systems development
-
Gennari JH Musen MA Fergerson RW: The evolution of Protégé: an environment for knowledge-based systems development. Int J Hum Comput Stud. 2003;58(1):89-123. 10.1016/S1071-5819(02)00127-1
-
(2003)
Int J Hum Comput Stud
, vol.58
, Issue.1
, pp. 89-123
-
-
Gennari, J.H.1
Musen, M.A.2
Fergerson, R.W.3
-
28
-
-
0642368715
-
Information extraction from full text scientific articles: where are the keywords?
-
12775220, 166134
-
Shah PK Perez-Iratxeta C Bork P: Information extraction from full text scientific articles: where are the keywords? BMC Bioinformatics. 4:20. 12775220 10.1186/1471-2105-4-20 166134
-
BMC Bioinformatics
, vol.4
, pp. 20
-
-
Shah, P.K.1
Perez-Iratxeta, C.2
Bork, P.3
-
29
-
-
85091096368
-
Vi iMproved
-
Reference Source, New Riders Publishing, Thousand Oaks, CA, USA,.
-
Oualline S: Vi iMproved. New Riders Publishing, Thousand Oaks, CA, USA,2001. Reference Source
-
(2001)
-
-
Oualline, S.1
-
30
-
-
0032991290
-
The medical dictionary for regulatory activities (MedDRA)
-
10082069
-
Brown EG Wood L Wood S: The medical dictionary for regulatory activities (MedDRA). Drug Saf. 1999;20(2):109-17. 10082069 10.2165/00002018-199920020-00002
-
(1999)
Drug Saf
, vol.20
, Issue.2
, pp. 109-17
-
-
Brown, E.G.1
Wood, L.2
Wood, S.3
-
31
-
-
37849034558
-
ProMiner: Recognition of Human Gene and Protein Names using regularly updated Dictionaries
-
Proceedings of the Second BioCreative Challenge Evaluation Workshop, Reference Source, In
-
Fluck J Mevissen HT Oster M: ProMiner: Recognition of Human Gene and Protein Names using regularly updated Dictionaries. In Proceedings of the Second BioCreative Challenge Evaluation Workshop, Madrid, Spain.2007;149-151. Reference Source
-
(2007)
, pp. 149-151
-
-
Fluck, J.1
Mevissen, H.T.2
Oster, M.3
-
32
-
-
34249753618
-
Support-vector networks
-
Machine Learning, In
-
Cortes C Vapnik V: Support-vector networks. In Machine Learning,1995;20(3):273-297. 10.1023/A:1022627411411
-
(1995)
, vol.20
, Issue.3
, pp. 273-297
-
-
Cortes, C.1
Vapnik, V.2
-
33
-
-
50949133669
-
LIBLINEAR: A Library for Large Linear Classification
-
Reference Source
-
Fan E Chang K Hsieh C: LIBLINEAR: A Library for Large Linear Classification. Machine Learning Research. 2008;9:1871-1874. Reference Source
-
(2008)
Machine Learning Research
, vol.9
, pp. 1871-1874
-
-
Fan, E.1
Chang, K.2
Hsieh, C.3
-
34
-
-
0000468432
-
Estimating continuous distributions in Bayesian classifiers
-
Proceedings of the Eleventh conference on Uncertainty in artificial intelligence, Reference Source, In
-
John GH Langley P: Estimating continuous distributions in Bayesian classifiers. In Proceedings of the Eleventh conference on Uncertainty in artificial intelligence, UAI'95, San Francisco, CA, USA, Morgan Kaufmann Publishers Inc.1995;338-345. Reference Source
-
(1995)
, pp. 338-345
-
-
John, G.H.1
Langley, P.2
-
35
-
-
84927937877
-
Improving distantly supervised extraction of drug-drug and protein-protein interactions
-
Proceedings of the Joint Workshop on Unsupervised and Semi-Supervised Learning in NLP, Reference Source, In
-
Bobić T Klinger R Thomas P: Improving distantly supervised extraction of drug-drug and protein-protein interactions. In Proceedings of the Joint Workshop on Unsupervised and Semi-Supervised Learning in NLP, Avignon, France, Association for Computational Linguistics.2012;35-43. Reference Source
-
(2012)
, pp. 35-43
-
-
Bobić, T.1
Klinger, R.2
Thomas, P.3
-
36
-
-
84948481845
-
An algorithm for suffix stripping
-
Porter M: An algorithm for suffix stripping. Program. 1980;14(3):130-137. 10.1108/eb046814
-
(1980)
Program
, vol.14
, Issue.3
, pp. 130-137
-
-
Porter, M.1
-
37
-
-
74049096234
-
Extracting protein-protein interaction from biomedical text using additional shallow parsing information
-
Biomedical Engineering and Informatics, 2009. BMEI '09. 2nd International Conference on, In
-
Yu H Qian L Zhou G: Extracting protein-protein interaction from biomedical text using additional shallow parsing information. In Biomedical Engineering and Informatics, 2009. BMEI '09. 2nd International Conference on,2009;1-5. 10.1109/BMEI.2009.5302220
-
(2009)
, pp. 1-5
-
-
Yu, H.1
Qian, L.2
Zhou, G.3
-
38
-
-
74649083091
-
BioPPISVMExtractor: a protein-protein interaction extractor for biomedical literature using svm and rich feature sets
-
19706337
-
Yang Z Lin H Li Y: BioPPISVMExtractor: a protein-protein interaction extractor for biomedical literature using svm and rich feature sets. J Biomed Inform. 2010;43(1):88-96. 19706337 10.1016/j.jbi.2009.08.013
-
(2010)
J Biomed Inform
, vol.43
, Issue.1
, pp. 88-96
-
-
Yang, Z.1
Lin, H.2
Li, Y.3
-
39
-
-
77954188732
-
Stanford typed dependencies manual
-
Reference Source
-
De Marneffe MC Manning CD: Stanford typed dependencies manual.2010. Reference Source
-
(2010)
-
-
De Marneffe, M.C.1
Manning, C.D.2
-
40
-
-
80053262847
-
A shortest path dependency kernel for relation extraction
-
Proceedings of the conference on Human Language Technology and Empirical Methods in Natural Language Processing, In
-
Bunescu RC Mooney RJ: A shortest path dependency kernel for relation extraction. In Proceedings of the conference on Human Language Technology and Empirical Methods in Natural Language Processing, Association for Computational Linguistics. HLT '05, Stroudsburg, PA, USA.2005;724-731. 10.3115/1220575.1220666
-
(2005)
, pp. 724-731
-
-
Bunescu, R.C.1
Mooney, R.J.2
-
41
-
-
79952730699
-
2011 Alzheimer's disease facts and figures
-
21414557
-
Thies W Bleiler L , Alzheimer's Association: 2011 Alzheimer's disease facts and figures. Alzheimers Dement. 2011;7(2):208-244. 21414557 10.1016/j.jalz.2011.02.004
-
(2011)
Alzheimers Dement
, vol.7
, Issue.2
, pp. 208-244
-
-
Thies, W.1
Bleiler, L.2
-
42
-
-
85091113166
-
Deep-sequencing of microRNA associated with Alzheimer's disease in biological fluids: From biomarker discovery to diagnostic practice
-
Cheng L Quek C Sun X: Deep-sequencing of microRNA associated with Alzheimer's disease in biological fluids: From biomarker discovery to diagnostic practice. Frontiers in Genetics. 2013;4(150).
-
(2013)
Frontiers in Genetics
, vol.4
, Issue.150
-
-
Cheng, L.1
Quek, C.2
Sun, X.3
-
43
-
-
38749095507
-
The expression of microRNA miR-107 decreases early in Alzheimer's disease and may accelerate disease progression through regulation of beta-site amyloid precursor protein-cleaving enzyme 1
-
18234899, 2837363
-
Wang WX Rajeev BW Stromberg AJ: The expression of microRNA miR-107 decreases early in Alzheimer's disease and may accelerate disease progression through regulation of beta-site amyloid precursor protein-cleaving enzyme 1. J Neurosci. 2008;28(5):1213-23. 18234899 10.1523/JNEUROSCI.5065-07.2008 2837363
-
(2008)
J Neurosci
, vol.28
, Issue.5
, pp. 1213-23
-
-
Wang, W.X.1
Rajeev, B.W.2
Stromberg, A.J.3
-
44
-
-
44049108170
-
Loss of microRNA cluster miR-29a/b-1 in sporadic Alzheimer's disease correlates with increased BACE1/beta-secretase expression
-
18434550, 2359789
-
Hébert SS Horré K Nicolaï L: Loss of microRNA cluster miR-29a/b-1 in sporadic Alzheimer's disease correlates with increased BACE1/beta-secretase expression. Proc Nat Acad Sci U S A. 2008;105(17):6415-6420. 18434550 10.1073/pnas.0710263105 2359789
-
(2008)
Proc Nat Acad Sci U S A
, vol.105
, Issue.17
, pp. 6415-6420
-
-
Hébert, S.S.1
Horré, K.2
Nicolaï, L.3
-
45
-
-
85091109956
-
Dataset, 1 version 2 in: Detecting miRNA Mentions and Relations in Biomedical Literature
-
Data Source
-
Bagewadi S Bobi T Hofmann-Apitius M: Dataset, 1 version 2 in: Detecting miRNA Mentions and Relations in Biomedical Literature. F1000Research. Data Source
-
F1000Research
-
-
Bagewadi, S.1
Bobi, T.2
Hofmann-Apitius, M.3
|