-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F, Madden, T.L, Schaffer, A.A, Zhang, J, Zhang, Z, Miller, W, and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402. doi: 10.1093/nar/25.17.3389.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
36749103110
-
Automated server predictions in CASP7
-
Battey, J.N, Kopp, J, Bordoli, L, Read, R.J, Clarke, N.D, and Schwede, T. 2007. Automated server predictions in CASP7. Proteins 69:68-82. doi: 10.1002/prot.21761.
-
(2007)
Proteins
, vol.69
, pp. 68-82
-
-
Battey, J.N.1
Kopp, J.2
Bordoli, L.3
Read, R.J.4
Clarke, N.D.5
Schwede, T.6
-
3
-
-
84904815625
-
SWISS-MODEL: Modelling protein tertiary and quaternary structure using evolutionary information
-
Biasini, M, Bienert, S, Waterhouse, A, Arnold, K, Studer, G, Schmidt, T, Kiefer, F, Cassarino, T.G, Bertoni, M, Bordoli, L, and Schwede, T. 2014. SWISS-MODEL: Modelling protein tertiary and quaternary structure using evolutionary information. Nucleic Acids Res. 42:W252-258. doi: 10.1093/nar/gku340.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. W252-258
-
-
Biasini, M.1
Bienert, S.2
Waterhouse, A.3
Arnold, K.4
Studer, G.5
Schmidt, T.6
Kiefer, F.7
Cassarino, T.G.8
Bertoni, M.9
Bordoli, L.10
Schwede, T.11
-
4
-
-
58749086057
-
The gene ontology (GO) project: Structured vocabularies for molecular biology and their application to genome and expression analysis
-
7.2
-
Blake, J. A. and Harris, M. A. 2008. The gene ontology (GO) project: Structured vocabularies for molecular biology and their application to genome and expression analysis. Curr. Protoc. Bioinformatics 23:7.2:7.2.1-7.2.9.
-
(2008)
Curr. Protoc. Bioinformatics
, vol.23
, pp. 7.2.1-7.2.9
-
-
Blake, J.A.1
Harris, M.A.2
-
5
-
-
38349100452
-
A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation
-
Brylinski, M. and Skolnick, J. 2008. A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation. Proc. Natl. Acad. Sci. U.S.A. 105:129-134. doi: 10.1073/pnas.0707684105.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 129-134
-
-
Brylinski, M.1
Skolnick, J.2
-
6
-
-
77954287478
-
Protein annotation and modelling servers at University College London
-
Buchan, D.W, Ward, S.M, Lobley, A.E, Nugent, T.C, Bryson, K, and Jones, D.T. 2010. Protein annotation and modelling servers at University College London. Nucleic Acids Res. 38:W563-568. doi: 10.1093/nar/gkq427.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. W563-568
-
-
Buchan, D.W.1
Ward, S.M.2
Lobley, A.E.3
Nugent, T.C.4
Bryson, K.5
Jones, D.T.6
-
7
-
-
74549149999
-
Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure
-
Capra, J.A, Laskowski, R.A, Thornton, J.M, Singh, M, and Funkhouser, T.A. 2009. Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure. PLoS Comput. Biol. 5:e1000585. doi: 10.1371/journal.pcbi.1000585.
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Capra, J.A.1
Laskowski, R.A.2
Thornton, J.M.3
Singh, M.4
Funkhouser, T.A.5
-
8
-
-
0037093643
-
Docking unbound proteins using shape complementarity, desolvation, and electrostatics
-
Chen, R. and Weng, Z. 2002. Docking unbound proteins using shape complementarity, desolvation, and electrostatics. Proteins 47:281-294. doi: 10.1002/prot.10092.
-
(2002)
Proteins
, vol.47
, pp. 281-294
-
-
Chen, R.1
Weng, Z.2
-
9
-
-
79956079283
-
Using the tools and resources of the RCSB protein data bank
-
1.9
-
Dutta, S, M. Berman, H, and F. Bluhm, W. 2007. Using the tools and resources of the RCSB protein data bank. Curr. Protoc. Bioinformatics 20:1.9:1.9.1-1.9.24.
-
(2007)
Curr. Protoc. Bioinformatics
, vol.20
, pp. 1.9.1-1.9.24
-
-
Dutta, S.1
M. Berman, H.2
F. Bluhm, W.3
-
10
-
-
63149134339
-
Representing structural information with RasMol
-
5.4
-
Goodsell, D. S. 2005. Representing structural information with RasMol. Curr. Protoc. Bioinformatics 11:5.4:5.4.1-5.4.23.
-
(2005)
Curr. Protoc. Bioinformatics
, vol.11
, pp. 5.4.1-5.4.23
-
-
Goodsell, D.S.1
-
11
-
-
84875464398
-
Mapping monomeric threading to protein-protein structure prediction
-
Guerler, A, Govindarajoo, B, and Zhang, Y. 2013. Mapping monomeric threading to protein-protein structure prediction. J. Chem. Inf. Model 53:717-725. doi: 10.1021/ci300579r.
-
(2013)
J. Chem. Inf. Model
, vol.53
, pp. 717-725
-
-
Guerler, A.1
Govindarajoo, B.2
Zhang, Y.3
-
12
-
-
84883481556
-
The protein model portal-a comprehensive resource for protein structure and model information
-
Haas, J, Roth, S, Arnold, K, Kiefer, F, Schmidt, T, Bordoli, L, and Schwede, T. 2013. The protein model portal-a comprehensive resource for protein structure and model information. Database (Oxford) 2013:bat031. doi: 10.1093/database/bat031.
-
(2013)
Database (Oxford)
, vol.2013
, pp. bat031
-
-
Haas, J.1
Roth, S.2
Arnold, K.3
Kiefer, F.4
Schmidt, T.5
Bordoli, L.6
Schwede, T.7
-
13
-
-
84903957091
-
Introducing protein intrinsic disorder
-
Habchi, J, Tompa, P, Longhi, S, and Uversky, V.N. 2014. Introducing protein intrinsic disorder. Chem. Rev. 114:6561-6588. doi: 10.1021/cr400514h.
-
(2014)
Chem. Rev.
, vol.114
, pp. 6561-6588
-
-
Habchi, J.1
Tompa, P.2
Longhi, S.3
Uversky, V.N.4
-
14
-
-
84892959896
-
Assessment of template-based protein structure predictions in CASP10
-
Huang, Y.J, Mao, B, Aramini, J.M, and Montelione, G.T. 2014. Assessment of template-based protein structure predictions in CASP10. Proteins 82:43-56. doi: 10.1002/prot.24488.
-
(2014)
Proteins
, vol.82
, pp. 43-56
-
-
Huang, Y.J.1
Mao, B.2
Aramini, J.M.3
Montelione, G.T.4
-
15
-
-
23144463912
-
FFAS03: A server for profile-profile sequence alignments
-
Jaroszewski, L, Rychlewski, L, Li, Z, Li, W, and Godzik, A. 2005. FFAS03: A server for profile-profile sequence alignments. Nucleic Acids Res. 33:W284-W288. doi: 10.1093/nar/gki418.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. W284-W288
-
-
Jaroszewski, L.1
Rychlewski, L.2
Li, Z.3
Li, W.4
Godzik, A.5
-
16
-
-
84864448769
-
Template-based protein structure modeling using the RaptorX web server
-
Källberg, M, Wang, H, Wang, S, Peng, J, Wang, Z, Lu, H, and Xu, J. 2012. Template-based protein structure modeling using the RaptorX web server. Nat. Protoc. 7:1511-1522. doi: 10.1038/nprot.2012.085.
-
(2012)
Nat. Protoc.
, vol.7
, pp. 1511-1522
-
-
Källberg, M.1
Wang, H.2
Wang, S.3
Peng, J.4
Wang, Z.5
Lu, H.6
Xu, J.7
-
17
-
-
84930074657
-
The Phyre2 web portal for protein modeling, prediction and analysis
-
Kelley, L.A, Mezulis, S, Yates, C.M, Wass, M.N, and Sternberg, M.J. 2015. The Phyre2 web portal for protein modeling, prediction and analysis. Nat. Protoc. 10:845-858. doi: 10.1038/nprot.2015.053.
-
(2015)
Nat. Protoc.
, vol.10
, pp. 845-858
-
-
Kelley, L.A.1
Mezulis, S.2
Yates, C.M.3
Wass, M.N.4
Sternberg, M.J.5
-
18
-
-
3242887695
-
Protein structure prediction and analysis using the Robetta server
-
Kim, D.E, Chivian, D, and Baker, D. 2004. Protein structure prediction and analysis using the Robetta server. Nucleic Acids Res. 32:W526-531. doi: 10.1093/nar/gkh468.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. W526-531
-
-
Kim, D.E.1
Chivian, D.2
Baker, D.3
-
19
-
-
84892968997
-
CASP10 results compared to those of previous CASP experiments
-
Kryshtafovych, A, Fidelis, K, and Moult, J. 2014. CASP10 results compared to those of previous CASP experiments. Proteins 82:164-174. doi: 10.1002/prot.24448.
-
(2014)
Proteins
, vol.82
, pp. 164-174
-
-
Kryshtafovych, A.1
Fidelis, K.2
Moult, J.3
-
20
-
-
84905686632
-
Common file formats
-
1B
-
Mills, L. 2014. Common file formats. Curr. Protoc. Bioinformatics 1:1B:A.1B.1-A.1B.18.
-
(2014)
Curr. Protoc. Bioinformatics
, vol.1
, pp. A.1B.1-A.1B.18
-
-
Mills, L.1
-
21
-
-
20444484434
-
A decade of CASP: Progress, bottlenecks and prognosis in protein structure prediction
-
Moult, J. 2005. A decade of CASP: Progress, bottlenecks and prognosis in protein structure prediction. Curr. Opin. Struct. Biol. 15:285-289. doi: 10.1016/j.sbi.2005.05.011.
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 285-289
-
-
Moult, J.1
-
22
-
-
84893021599
-
Critical assessment of methods of protein structure prediction (CASP)-round x
-
Moult, J, Fidelis, K, Kryshtafovych, A, Schwede, T, and Tramontano, A. 2014. Critical assessment of methods of protein structure prediction (CASP)-round x. Proteins 82:1-6. doi: 10.1002/prot.24452.
-
(2014)
Proteins
, vol.82
, pp. 1-6
-
-
Moult, J.1
Fidelis, K.2
Kryshtafovych, A.3
Schwede, T.4
Tramontano, A.5
-
23
-
-
79960164372
-
Protein-protein complex structure predictions by multimeric threading and template recombination
-
Mukherjee, S. and Zhang, Y. 2011. Protein-protein complex structure predictions by multimeric threading and template recombination. Structure 19:955-966. doi: 10.1016/j.str.2011.04.006.
-
(2011)
Structure
, vol.19
, pp. 955-966
-
-
Mukherjee, S.1
Zhang, Y.2
-
24
-
-
84861975365
-
Recognizing protein-ligand binding sites by global structural alignment and local geometry refinement
-
Roy, A. and Zhang, Y. 2012. Recognizing protein-ligand binding sites by global structural alignment and local geometry refinement. Structure 20:987-997. doi: 10.1016/j.str.2012.03.009.
-
(2012)
Structure
, vol.20
, pp. 987-997
-
-
Roy, A.1
Zhang, Y.2
-
25
-
-
77954065271
-
I-TASSER: A unified platform for automated protein structure and function prediction
-
Roy, A, Kucukural, A, and Zhang, Y. 2010. I-TASSER: A unified platform for automated protein structure and function prediction. Nat. Protoc. 5:725-738. doi: 10.1038/nprot.2010.5.
-
(2010)
Nat. Protoc.
, vol.5
, pp. 725-738
-
-
Roy, A.1
Kucukural, A.2
Zhang, Y.3
-
26
-
-
84864460609
-
COFACTOR: An accurate comparative algorithm for structure-based protein function annotation
-
Roy, A, Yang, J, and Zhang, Y. 2012. COFACTOR: An accurate comparative algorithm for structure-based protein function annotation. Nucleic Acids Res. 40:W471-477. doi: 10.1093/nar/gks372.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. W471-477
-
-
Roy, A.1
Yang, J.2
Zhang, Y.3
-
27
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
Sali, A. and Blundell, T.L. 1993. Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol. 234:779-815. doi: 10.1006/jmbi.1993.1626.
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
28
-
-
80855147871
-
Assessment of ligand-binding residue predictions in CASP9
-
Schmidt, T, Haas, J, Cassarino, T.G, and Schwede, T. 2011. Assessment of ligand-binding residue predictions in CASP9. Proteins 79:126-136. doi: 10.1002/prot.23174.
-
(2011)
Proteins
, vol.79
, pp. 126-136
-
-
Schmidt, T.1
Haas, J.2
Cassarino, T.G.3
Schwede, T.4
-
29
-
-
23144452044
-
The HHpred interactive server for protein homology detection and structure prediction
-
Soding, J, Biegert, A, and Lupas, A.N. 2005. The HHpred interactive server for protein homology detection and structure prediction. Nucleic. Acids Res. 33:W244-248. doi: 10.1093/nar/gki408.
-
(2005)
Nucleic. Acids Res.
, vol.33
, pp. W244-248
-
-
Soding, J.1
Biegert, A.2
Lupas, A.N.3
-
30
-
-
84890029384
-
Template-based structure prediction of protein-protein interactions
-
Szilagyi, A. and Zhang, Y. 2014. Template-based structure prediction of protein-protein interactions. Curr. Opin. Struc. Biol. 24:10-23. doi: 10.1016/j.sbi.2013.11.005.
-
(2014)
Curr. Opin. Struc. Biol.
, vol.24
, pp. 10-23
-
-
Szilagyi, A.1
Zhang, Y.2
-
31
-
-
21644458085
-
Development and testing of an automated approach to protein docking
-
Tovchigrechko, A. and Vakser, I.A. 2005. Development and testing of an automated approach to protein docking. Proteins 60:296-301. doi: 10.1002/prot.20573.
-
(2005)
Proteins
, vol.60
, pp. 296-301
-
-
Tovchigrechko, A.1
Vakser, I.A.2
-
32
-
-
34250851687
-
LOMETS: A local meta-threading-server for protein structure prediction
-
Wu, S. and Zhang, Y. 2007. LOMETS: A local meta-threading-server for protein structure prediction. Nucl. Acids. Res. 35:3375-3382. doi: 10.1093/nar/gkm251.
-
(2007)
Nucl. Acids. Res.
, vol.35
, pp. 3375-3382
-
-
Wu, S.1
Zhang, Y.2
-
33
-
-
46449123146
-
MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information
-
Wu, S. and Zhang, Y. 2008. MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information. Proteins 72:547-556. doi: 10.1002/prot.21945.
-
(2008)
Proteins
, vol.72
, pp. 547-556
-
-
Wu, S.1
Zhang, Y.2
-
34
-
-
34249869832
-
Ab initio modeling of small proteins by iterative TASSER simulations
-
Wu, S, Skolnick, J, and Zhang, Y. 2007. Ab initio modeling of small proteins by iterative TASSER simulations. BMC Biol. 5:17. doi: 10.1186/1741-7007-5-17.
-
(2007)
BMC Biol.
, vol.5
, pp. 17
-
-
Wu, S.1
Skolnick, J.2
Zhang, Y.3
-
35
-
-
77951961719
-
How significant is a protein structure similarity with TM-score = 0.5
-
Xu, J. and Zhang, Y. 2010. How significant is a protein structure similarity with TM-score = 0.5? Bioinformatics 26:889-895. doi: 10.1093/bioinformatics/btq066.
-
(2010)
Bioinformatics
, vol.26
, pp. 889-895
-
-
Xu, J.1
Zhang, Y.2
-
36
-
-
81255123286
-
Improving the physical realism and structural accuracy of protein models by a two-step atomic-level energy minimization
-
Xu, D. and Zhang, Y. 2011. Improving the physical realism and structural accuracy of protein models by a two-step atomic-level energy minimization. Biophys J. 101:2525-2534. doi: 10.1016/j.bpj.2011.10.024.
-
(2011)
Biophys J.
, vol.101
, pp. 2525-2534
-
-
Xu, D.1
Zhang, Y.2
-
37
-
-
84864405087
-
Ab initio protein structure assembly using continuous structure fragments and optimized knowledge-based force field
-
Xu, D. and Zhang, Y. 2012. Ab initio protein structure assembly using continuous structure fragments and optimized knowledge-based force field. Proteins 80:1715-1735. doi: 10.1002/prot.24105.
-
(2012)
Proteins
, vol.80
, pp. 1715-1735
-
-
Xu, D.1
Zhang, Y.2
-
38
-
-
80855147432
-
Automated protein structure modeling in CASP9 by I-TASSER pipeline combined with QUARK-based ab initio folding and FG-MD-based structure refinement
-
Xu, D, Zhang, J, Roy, A, and Zhang, Y. 2011. Automated protein structure modeling in CASP9 by I-TASSER pipeline combined with QUARK-based ab initio folding and FG-MD-based structure refinement. Proteins 79:147-160. doi: 10.1002/prot.23111.
-
(2011)
Proteins
, vol.79
, pp. 147-160
-
-
Xu, D.1
Zhang, J.2
Roy, A.3
Zhang, Y.4
-
39
-
-
84879988025
-
ThreaDom: Extracting protein domain boundary information from multiple threading alignments
-
Xue, Z, Xu, D, Wang, Y, and Zhang, Y. 2013. ThreaDom: Extracting protein domain boundary information from multiple threading alignments. Bioinformatics 29:i247-i256. doi: 10.1093/bioinformatics/btt209.
-
(2013)
Bioinformatics
, vol.29
, pp. i247-i256
-
-
Xue, Z.1
Xu, D.2
Wang, Y.3
Zhang, Y.4
-
40
-
-
84979850726
-
I-TASSER server: New development for protein structure and function predictions
-
Yang, J. and Zhang, Y. 2015. I-TASSER server: New development for protein structure and function predictions. Nucleic Acids Res. 43:W174-181. doi: 10.1093/nar/gkv342.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. W174-181
-
-
Yang, J.1
Zhang, Y.2
-
41
-
-
84876574278
-
BioLiP: A semi-manually curated database for biologically relevant ligand-protein interactions
-
Yang, J, Roy, A, and Zhang, Y. 2013a. BioLiP: A semi-manually curated database for biologically relevant ligand-protein interactions. Nucleic Acids Res. 41:D1096-1103. doi: 10.1093/nar/gks966.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D1096-1103
-
-
Yang, J.1
Roy, A.2
Zhang, Y.3
-
42
-
-
84885655034
-
Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment
-
Yang, J, Roy, A, and Zhang, Y. 2013b. Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment. Bioinformatics 29:2588-2595. doi: 10.1093/bioinformatics/btt447.
-
(2013)
Bioinformatics
, vol.29
, pp. 2588-2595
-
-
Yang, J.1
Roy, A.2
Zhang, Y.3
-
43
-
-
84925156346
-
The I-TASSER Suite: Protein structure and function prediction
-
Yang, J, Yan, R, Roy, A, Xu, D, Poisson, J, and Zhang, Y. 2015. The I-TASSER Suite: Protein structure and function prediction. Nat. Meth. 12:7-8. doi: 10.1038/nmeth.3213.
-
(2015)
Nat. Meth.
, vol.12
, pp. 7-8
-
-
Yang, J.1
Yan, R.2
Roy, A.3
Xu, D.4
Poisson, J.5
Zhang, Y.6
-
44
-
-
36749061828
-
Template-based modeling and free modeling by I-TASSER in CASP7
-
Zhang, Y. 2007. Template-based modeling and free modeling by I-TASSER in CASP7. Proteins 69:108-117. doi: 10.1002/prot.21702.
-
(2007)
Proteins
, vol.69
, pp. 108-117
-
-
Zhang, Y.1
-
45
-
-
39449115394
-
I-TASSER server for protein 3D structure prediction
-
Zhang, Y. 2008. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics 9:40. doi: 10.1186/1471-2105-9-40.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 40
-
-
Zhang, Y.1
-
46
-
-
74249106219
-
I-TASSER: Fully automated protein structure prediction in CASP8
-
Zhang, Y. 2009. I-TASSER: Fully automated protein structure prediction in CASP8. Proteins 77:100-113. doi: 10.1002/prot.22588.
-
(2009)
Proteins
, vol.77
, pp. 100-113
-
-
Zhang, Y.1
-
47
-
-
84893010893
-
Interplay of I-TASSER and QUARK for template-based and ab initio protein structure prediction in CASP10
-
Zhang, Y. 2014. Interplay of I-TASSER and QUARK for template-based and ab initio protein structure prediction in CASP10. Proteins 82:175-187. doi: 10.1002/prot.24341.
-
(2014)
Proteins
, vol.82
, pp. 175-187
-
-
Zhang, Y.1
-
48
-
-
2442676589
-
Automated structure prediction of weakly homologous proteins on a genomic scale
-
Zhang, Y. and Skolnick, J. 2004a. Automated structure prediction of weakly homologous proteins on a genomic scale. Proc. Natl. Acad. Sci. USA 101:7594-7599. doi: 10.1073/pnas.0305695101.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 7594-7599
-
-
Zhang, Y.1
Skolnick, J.2
-
49
-
-
1942519275
-
SPICKER: A clustering approach to identify near-native protein folds
-
Zhang, Y. and Skolnick, J. 2004b. SPICKER: A clustering approach to identify near-native protein folds. J. Comput. Chem. 25:865-871. doi: 10.1002/jcc.20011.
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 865-871
-
-
Zhang, Y.1
Skolnick, J.2
-
50
-
-
17644392830
-
TM-align: A protein structure alignment algorithm based on the TM-score
-
Zhang, Y. and Skolnick, J. 2005. TM-align: A protein structure alignment algorithm based on the TM-score. Nucleic Acids Res. 33:2302-2309. doi: 10.1093/nar/gki524.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 2302-2309
-
-
Zhang, Y.1
Skolnick, J.2
-
51
-
-
0041843696
-
TOUCHSTONE II: A new approach to ab initio protein structure prediction
-
Zhang, Y, Kolinski, A, and Skolnick, J. 2003. TOUCHSTONE II: A new approach to ab initio protein structure prediction. Biophys. J. 85:1145-1164. doi: 10.1016/S0006-3495(03)74551-2.
-
(2003)
Biophys. J.
, vol.85
, pp. 1145-1164
-
-
Zhang, Y.1
Kolinski, A.2
Skolnick, J.3
-
52
-
-
82955239912
-
Atomic-level protein structure refinement using fragment-guided molecular dynamics conformation sampling
-
Zhang, J, Liang, Y, and Zhang, Y. 2011. Atomic-level protein structure refinement using fragment-guided molecular dynamics conformation sampling. Structure 19:1784-1795. doi: 10.1016/j.str.2011.09.022.
-
(2011)
Structure
, vol.19
, pp. 1784-1795
-
-
Zhang, J.1
Liang, Y.2
Zhang, Y.3
-
53
-
-
84938745406
-
GPCR-I-TASSER: A hybrid approach to G protein-coupled receptor structure modeling and the application to the human genome
-
submitted
-
Zhang, J, Yang, J, Jang, R, and Zhang, Y. 2015. GPCR-I-TASSER: A hybrid approach to G protein-coupled receptor structure modeling and the application to the human genome. Structure 23:1538-1549. submitted. doi: 10.1016/j.str.2015.06.007.
-
(2015)
Structure
, vol.23
, pp. 1538-1549
-
-
Zhang, J.1
Yang, J.2
Jang, R.3
Zhang, Y.4
-
54
-
-
34548608483
-
Ab initio protein structure prediction using Chunk-TASSER
-
Zhou, H.Y. and Skolnick, J. 2007. Ab initio protein structure prediction using Chunk-TASSER. Biophys. J. 93:1510-1518. doi: 10.1529/biophysj.107.109959.
-
(2007)
Biophys. J.
, vol.93
, pp. 1510-1518
-
-
Zhou, H.Y.1
Skolnick, J.2
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