The burden of typhoid fever in low- and middle-income countries: A meta-regression approach

PLoS Neglected Tropical Diseases

Volumn 11, Issue 2, 2017, Pages

  Antillón, Marina ^a   Warren, Joshua L ^a   Crawford, Forrest W ^a   Weinberger, Daniel M ^a   Kürüm, Esra ^b   Pak, Gi Deok ^c   Marks, Florian ^c   Pitzer, Virginia E ^a  

^a YALE UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c International Vaccine Institute   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

TYPHOID VACCINE;

ARTICLE; BAYES THEOREM; CLINICAL OBSERVATION; DISEASE COURSE; DISEASE TRANSMISSION; DISPERSITY; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS PREVALENCE; INCIDENCE; LOW INCOME COUNTRY; MAJOR CLINICAL STUDY; MIDDLE INCOME COUNTRY; POPULATION BASED CASE CONTROL STUDY; PREDICTOR VARIABLE; REGRESSION ANALYSIS; SOCIOECONOMICS; SOUND ANALYSIS; TYPHOID FEVER; UNCERTAINTY; VALIDATION PROCESS; DEVELOPING COUNTRY; GLOBAL HEALTH; STATISTICAL MODEL;

DEVELOPING COUNTRIES; GLOBAL HEALTH; HUMANS; INCIDENCE; MODELS, STATISTICAL; TYPHOID FEVER;

EID: 85014574042     PISSN: 19352727     EISSN: 19352735     Source Type: Journal    
DOI: 10.1371/journal.pntd.0005376     Document Type: Article

References (55)

1. Buckle GC, Walker CLF, Black RE, Typhoid fever and paratyphoid fever: Systematic review to estimate global morbidity and mortality for 2010. J Glob Health. 2012;2: 10401.
2. Mogasale V, Maskery B, Ochiai RL, Lee JS, Mogasale V V, Ramani E, et al. Burden of typhoid fever in low-income and middle-income countries: a systematic, literature-based update with risk-factor adjustment. Lancet Glob Heal. Mogasale et al. Open Access article distributed under the terms of CC BY-NC-SA; 2014;2: e570–80.
3. Lee J-S, Mogasale V V., Mogasale V, Lee K, Geographical distribution of typhoid risk factors in low and middle income countries. BMC Infect Dis. BMC Infectious Diseases; 2016;16: 732. doi: 10.1186/s12879-016-2074-127919235
4. Parry CM, Hien TT, Dougan G, White NJ, Farrar JJ, Typhoid fever. N Engl J Med. 2002;347: 1770–82. doi: 10.1056/NEJMra02020112456854
5. Bhan MK, Bahl R, Bhatnagar S, Typhoid and paratyphoid fever. Lancet. 2005;366: 749–62. doi: 10.1016/S0140-6736(05)67181-416125594
6. Dougan G, Baker S, Salmonella enterica serovar Typhi and the pathogenesis of typhoid fever. Annu Rev Microbiol. 2014;68: 317–36. doi: 10.1146/annurev-micro-091313-10373925208300
7. Bhutta ZA, Impact of age and drug resistance on mortality in typhoid fever. Arch Dis Child. 1996;75: 214–217. 8976660
8. Parry CM, Beeching NJ, Epidemiology, diagnosis and treatment of enteric fever. Curr Opin Infect Dis. 1998;11: 583–590. 17033425
9. Khan MI, Soofi SB, Ochiai RL, Khan MJ, Sahito SM, Habib MA, et al. Epidemiology, clinical presentation, and patterns of drug resistance of Salmonella Typhi in Karachi, Pakistan. J Infect Dev Ctries. Italy; 2012;6: 704–714.
10. Sur D, von Seidlein L, Manna B, Dutta S, Deb AK, Sarkar BL, et al. The malaria and typhoid fever burden in the slums of Kolkata, India: data from a prospective community-based study. Trans R Soc Trop Med Hyg. 2006;100: 725–33. doi: 10.1016/j.trstmh.2005.10.01916455118
11. Crump JA, Typhoid Fever and the challenge of nonmalaria febrile illness in sub-saharan Africa. Clin Infect Dis. 2012;54: 1107–9. doi: 10.1093/cid/cis02422357701
12. Crump JA, Luby SP, Mintz ED, The global burden of typhoid fever. Bull World Health Organ. 2004;82: 346–53. 15298225
13. Lin F-YC, Ho VA, P Van Bay, Nguyen TTT, Bryla D, Thanh TC, et al. The epidemiology of typhoid fever in the Dong Thap Province, Mekong Delta region of Vietnam. Am J Trop Med Hyg. 2000;62: 644–8. 11289678
14. Brooks WA, Hossain A, Goswami D, Sharmeen AT, Nahar K, Alam K, et al. Bacteremic typhoid fever in children in an urban slum, Bangladesh. Emerg Infect Dis. 2005;11: 326–329. doi: 10.3201/eid1102.04042215752457
15. Siddiqui FJ, Rabbani F, Hasan R, Nizami SQ, Bhutta ZA, Typhoid fever in children: some epidemiological considerations from Karachi, Pakistan. Int J Infect Dis. 2006;10: 215–22. doi: 10.1016/j.ijid.2005.03.01016431148
16. Gridded Population of the World, Version 3 (GPWv3): National Identifier Grid. Palisades, NY: NASA Socioeconomic Data and Applications Center (SEDAC); 2005.
17. Nordhaus WD, Geography and macroeconomics: new data and new findings. Proc Natl Acad Sci U S A. 2006;103: 3510–7. doi: 10.1073/pnas.050984210316473945
18. World BankWorld Development Indicators. Washington, DC.: World Bank (producer and distributor); 2015.
19. Smits J. GDL Area Database. Nijmegen, The Netherlands; 2016. Report No.: 16–101.
20. WHO/UNICEF Joint Monitoring Program for Water and Sanitation [Internet]. 2016 [cited 1 Nov 2016]. http://www.wssinfo.org/data-estimates/
21. Adhikari P, Hong Y, Douglas KR, Kirschbaum DB, Gourley J, Adler R, et al. A digitized global flood inventory (1998–2008): Compilation and preliminary results. Nat Hazards. 2010;55: 405–422.
22. UNAIDS AIDSInfo [Internet]. [cited 1 Nov 2016]. http://aidsinfo.unaids.org
23. Mekonnen MM, Hoekstra AY, Four billion people facing severe water scarcity. Sci Adv. 2016;2: e1500323. doi: 10.1126/sciadv.150032326933676
24. Nichols C, Cruz Espinoza LM, Von Kalckreuth V, Aaby P, Ahmed El Tayeb M, Ali M, et al. Bloodstream infections and frequency of pretreatment associated with age and hospitalization status in Sub-Saharan Africa. Clin Infect Dis. 2015;61: S372–S379. doi: 10.1093/cid/civ73026449954
25. Marks F, Kalckreuth V Von, Aaby P, Adu-sarkodie Y, Ahmed M, Tayeb E, et al. Articles Incidence of invasive salmonella disease in sub-Saharan Africa: a multicentre population-based surveillance study. 2017; 4–8.
26. Date KA, Bentsi-Enchill AD, Fox KK, Abeysinghe N, Mintz ED, Khan MI, et al. Typhoid fever surveillance and vaccine use, South-East Asia and Western Pacific Regions, 2009–2013. Morb Mortal Wkly Rep. 2014;63: 855–61.
27. Date KA, Bentsi-Enchill A, Marks F, Fox K, Typhoid fever vaccination strategies. Vaccine. Elsevier Ltd; 2015;33: C55–C61.
28. George EI, McCulloch RE, Variable Selection via Gibbs Sampling. Journal of the American Statistical Association. 1993. pp. 881–889.
29. Ishwaran H, Rao JS, Spike and slab variable selection: Frequentist and bayesian strategies. Ann Stat. 2005;33: 730–773.
30. Plummer M. JAGS: A program for analysis of Bayesian graphical models using Gibbs sampling. Proc 3rd Int Work Distrib Stat Comput. 2003; 1–10.
31. Steyvers M, Kalish M. MATJAGS, a Matlab interface for JAGS. 2014.
32. von Kalckreuth V, Konings F, Aaby P, Adu-Sarkodie Y, Ali M, Aseffa A, et al. The Typhoid Fever Surveillance in Africa Program (TSAP): Clinical, Diagnostic, and Epidemiological Methodologies. Clin Infect Dis. 2016;62: S9–S16. doi: 10.1093/cid/civ69326933028
33. Srikantiah P, Vafokulov S, Luby SP, Ishmail T, Earhart K, Khodjaev N, et al. Epidemiology and risk factors for endemic typhoid fever in Uzbekistan. Trop Med Int Heal. 2007;12: 838–47.
34. Sur D, Ali M, von Seidlein L, Manna B, Deen JL, Acosta CJ, et al. Comparisons of predictors for typhoid and paratyphoid fever in Kolkata, India. BMC Public Health. 2007;7: 289. doi: 10.1186/1471-2458-7-28917935611
35. Baker S, Holt KE, Clements ACA, Karkey A, Arjyal A, Boni MF, et al. Combined high-resolution genotyping and geospatial analysis reveals modes of endemic urban typhoid fever transmission. Open Biol. 2011;1: 110008. doi: 10.1098/rsob.11000822645647
36. Mermin JH, Villar R, Carpenter J, Roberts L, Samaridden a, Gasanova L, et al. A massive epidemic of multidrug-resistant typhoid fever in Tajikistan associated with consumption of municipal water. J Infect Dis. 1999;179: 1416–1422. doi: 10.1086/31476610228063
37. Bain R, Cronk R, Hossain R, Bonjour S, Onda K, Wright J, et al. Global assessment of exposure to faecal contamination through drinking water based on a systematic review. Trop Med Int Heal. 2014;19: 917–927.
38. Mogasale V, Maskery B, Ochiai RL, Lee JS, Mogasale V V, Ramani E, et al. Revisiting the burden of typhoid fever in low and middle-income countries to inform policy decisions. Am J Trop Med Hyg. 2014;1: 571.
39. Sinha A, Sazawal S, Kumar R, Sood S, Reddaiah VP, Singh B, et al. Typhoid fever in children aged less than 5 years. Lancet. 1999;354: 734–7. doi: 10.1016/S0140-6736(98)09001-110475185
40. Crump JA, Mintz ED, Global Trends in Typhoid and Paratyphoid Fever. Clin Infect Dis. 2010;50: 241–6. doi: 10.1086/64954120014951
41. Wong VK, Baker S, Pickard DJ, Parkhill J, Page AJ, Feasey NA, et al. Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events. Nat Genet. 2015;47: 632–639. doi: 10.1038/ng.328125961941
42. Neil KP, Sodha S V, Lukwago L, O-tipo S, Mikoleit M, Simington SD, et al. A Large Outbreak of Typhoid Fever Associated With a High Rate of Intestinal Perforation in Kasese District, Uganda, 2008–2009. Clin Infect Dis. 2012;54: 1091–9. doi: 10.1093/cid/cis02522357703
43. Sejvar J, Lutterloh E, Naiene J, Likaka A, Manda R, Nygren B, et al. Neurologic manifestations associated with an outbreak of typhoid fever, Malawi -Mozambique, 2009: an epidemiologic investigation. PLoS One. 2012;7: e46099. doi: 10.1371/journal.pone.004609923226492
44. Gordon MA, Graham SM, Walsh AL, Wilson L, Phiri A, Molyneux E, et al. Epidemics of invasive Salmonella enterica serovar enteritidis and S. enterica Serovar typhimurium infection associated with multidrug resistance among adults and children in Malawi. Clin Infect Dis. 2008;46: 963–9. doi: 10.1086/52914618444810
45. Pitzer VE, Feasey NA, Msefula C, Mallewa J, Kennedy N, Dube Q, et al. Mathematical Modeling to Assess the Drivers of the Recent Emergence of Typhoid Fever in Blantyre, Malawi. Clin Infect Dis. 2015;61: S251–S258. doi: 10.1093/cid/civ71026449939
46. Maskey AP, Basnyat B, Thwaites GE, Campbell JI, Farrar JJ, Zimmerman MD, Emerging trends in enteric fever in Nepal: 9124 cases confirmed by blood culture 1993–2003. Trans R Soc Trop Med Hyg. 2008;102: 91–5. doi: 10.1016/j.trstmh.2007.10.00318023462
47. Pitzer VE, Bowles CC, Baker S, Kang G, Balaji V, Farrar JJ, et al. Predicting the impact of vaccination on the transmission dynamics of typhoid in South Asia: a mathematical modeling study. PLoS Negl Trop Dis. 2014;8: e2642. doi: 10.1371/journal.pntd.000264224416466
48. Feasey NA, Gaskell K, Wong V, Msefula C, Selemani G, Kumwenda S, et al. Rapid emergence of multidrug resistant, H58-lineage Salmonella typhi in Blantyre, Malawi. PLoS Negl Trop Dis. United States; 2015;9: e0003748.
49. Sauvageot D, Njanpop-Lafourcade BM, Akilimali L, Anne JC, Bidjada P, Bompangue D, et al. Cholera Incidence and Mortality in Sub-Saharan African Sites during Multi-country Surveillance. PLoS Negl Trop Dis. 2016;10: 1–16.
50. Gilman RH, Terminel M, Levine MM, Hernandez-Mendoza P, Hornick RB, Relative efficacy of blood, urine, rectal swab, bone-marrow, and rose-spot cultures for recovery of Salmonella typhi in typhoid fever. Lancet. 1975;1: 1211–3. 48834
51. Hoffman SL, Edman DC, Punjabi NH, Lesmana M, Cholid A, Sundah S, et al. Bone marrow aspirate culture superior to streptokinase clot culture and 8 ml 1:10 blood-to-broth ratio blood culture for diagnosis of typhoid fever. Am J Trop Med Hyg. 1986;35: 836–9. 3089041
52. Gasem MH, Dolmans WM, Isbandrio BB, Wahyono H, Keuter M, Djokomoeljanto R, et al. Culture of Salmonella typhi and Salmonella paratyphi from blood and bone marrow in suspected typhoid fever. Trop Geogr Med. Amsterdam, Netherlands; 1995;47: 164–167.
53. Guerra-Caceres JG, Gotuzzo-Herencia E, Crosby-Dagnino E, Miro-Quesada M, Carrillo-Parodi C, Diagnostic-Value of Bone-Marrow Culture in Typhoid-Fever. Trans R Soc Trop Med Hyg. 1979;73: 680–683. 538809
54. Wain J, Hosoglu S, The laboratory diagnosis of enteric fever. J Infect Dev Ctries. 2008;2: 421–425. http://dx.doi.org/10.3855/jidc.16419745517
55. Gasem MH, Smits HL, Goris MGA, Dolmans WM V, Evaluation of a simple and rapid dipstick assay for the diagnosis of typhoid fever in Indonesia. J Med Microbiol. 2002;51: 173–177. doi: 10.1099/0022-1317-51-2-17311865843