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Volumn , Issue , 2017, Pages 178-183

DeeperBind: Enhancing prediction of sequence specificities of DNA binding proteins

Author keywords

[No Author keywords available]

Indexed keywords

BINDING ENERGY; BINDING SITES; BINS; BIOCHEMISTRY; BIOINFORMATICS; DEEP LEARNING; DNA; FORECASTING; PIPELINES; PROTEINS; THROUGHPUT; TRANSCRIPTION;

EID: 85013296104     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/BIBM.2016.7822515     Document Type: Conference Paper
Times cited : (130)

References (19)
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  • 2
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    • Berger, M.F.1    Bulyk, M.L.2
  • 3
    • 33750882505 scopus 로고    scopus 로고
    • Compact, universal DNA microarrays to comprehensively determine transcriptionfactor binding site specificities
    • Michael F. Berger, Anthony A. Philippakis, Aaron M. Qureshi, Fangxue S. He, Preston W. Estep, and Martha L. Bulyk. Compact, universal DNA microarrays to comprehensively determine transcriptionfactor binding site specificities. Nature biotechnology, 24 (11): 1429-1435, 2006.
    • (2006) Nature Biotechnology , vol.24 , Issue.11 , pp. 1429-1435
    • Berger, M.F.1    Philippakis, A.A.2    Qureshi, A.M.3    He, F.S.4    Estep, P.W.5    Bulyk, M.L.6
  • 4
    • 34547844155 scopus 로고    scopus 로고
    • RankMotif++: A motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors
    • Xiaoyu Chen, Timothy R. Hughes, and Quaid Morris. RankMotif++: A motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors. Bioinformatics, 23 (13): i72-i79, 2007.
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    • Chen, X.1    Hughes, T.R.2    Morris, Q.3
  • 7
    • 33745614618 scopus 로고    scopus 로고
    • Linking DNA-binding proteins to their recognition sequences by using protein microarrays
    • Su-Wen W. Ho, Ghil Jona, Christina T L T. Chen, Mark Johnston, and Michael Snyder. Linking DNA-binding proteins to their recognition sequences by using protein microarrays. Proc Natl Acad Sci U S A, 2006.
    • (2006) Proc Natl Acad Sci U S A
    • Ho, S.-W.W.1    Jona, G.2    Chen, T.L.C.T.3    Johnston, M.4    Snyder, M.5
  • 9
    • 34250159524 scopus 로고    scopus 로고
    • Genome-wide mapping of in vivo protein-DNA interactions
    • David S. Johnson, Ali Mortazavi, Richard M. Myers, and Barbara Wold. Genome-Wide Mapping of in Vivo Protein-DNA Interactions. Science, 316 (5830): 1497-1502, 2007.
    • (2007) Science , vol.316 , Issue.5830 , pp. 1497-1502
    • Johnson, D.S.1    Mortazavi, A.2    Myers, R.M.3    Wold, B.4
  • 11
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    • Uniprobe: An online database of protein binding microarray data on protein-DNA interactions
    • Daniel E Newburger and Martha L Bulyk. Uniprobe: An online database of protein binding microarray data on protein-dna interactions. Nucleic acids research, 37 (suppl 1): D77-D82, 2009.
    • (2009) Nucleic Acids Research , vol.37 , pp. D77-D82
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    • Extensive low-affinity transcriptional interactions in the yeast genome
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    • Tanay, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.