-
1
-
-
64049089430
-
Quantitating the multiplicity of infection with human immunodeficiency virus type 1 subtype C reveals a non-poisson distribution of transmitted variants
-
Center for HIVAVIC. PubMed PMID: 19193811. Pubmed Central PMCID: 2663249
-
Abrahams MR, Anderson JA, Giorgi EE, Seoighe C, Mlisana K, Ping LH, Athreya GS, Treurnicht FK, Keele BF, Wood N, Salazar-Gonzalez JF, Bhattacharya T, Chu H, Hoffman I, Galvin S, Mapanje C, Kazembe P, Thebus R, Fiscus S, Hide W, Cohen MS, Karim SA, Haynes BF, Shaw GM, Hahn BH, Korber BT, Swanstrom R, Williamson C, Team CAIS, Center for HIVAVIC. Quantitating the multiplicity of infection with human immunodeficiency virus type 1 subtype C reveals a non-poisson distribution of transmitted variants. J Virol. 2009;83(8):3556-67. PubMed PMID: 19193811. Pubmed Central PMCID: 2663249. doi: 10.1128/JVI.02132-08
-
(2009)
J Virol
, vol.83
, Issue.8
, pp. 3556-3567
-
-
Abrahams, MR1
Anderson, JA2
Giorgi, EE3
Seoighe, C4
Mlisana, K5
Ping, LH6
Athreya, GS7
Treurnicht, FK8
Keele, BF9
Wood, N10
Salazar-Gonzalez, JF11
Bhattacharya, T12
Chu, H13
Hoffman, I14
Galvin, S15
Mapanje, C16
Kazembe, P17
Thebus, R18
Fiscus, S19
Hide, W20
Cohen, MS21
Karim, SA22
Haynes, BF23
Shaw, GM24
Hahn, BH25
Korber, BT26
Swanstrom, R27
Williamson, C28
Team, CAIS29
more..
-
2
-
-
77952678708
-
Wide variation in the multiplicity of HIV-1 infection among injection drug users
-
PubMed PMID: 20375173. Pubmed Central PMCID: 2876625
-
Bar KJ, Li H, Chamberland A, Tremblay C, Routy JP, Grayson T, Sun C, Wang S, Learn GH, Morgan CJ, Schumacher JE, Haynes BF, Keele BF, Hahn BH, Shaw GM. Wide variation in the multiplicity of HIV-1 infection among injection drug users. J Virol. 2010;84(12):6241-7. PubMed PMID: 20375173. Pubmed Central PMCID: 2876625. doi: 10.1128/JVI.00077-10
-
(2010)
J Virol
, vol.84
, Issue.12
, pp. 6241-6247
-
-
Bar, KJ1
Li, H2
Chamberland, A3
Tremblay, C4
Routy, JP5
Grayson, T6
Sun, C7
Wang, S8
Learn, GH9
Morgan, CJ10
Schumacher, JE11
Haynes, BF12
Keele, BF13
Hahn, BH14
Shaw, GM.15
-
3
-
-
59249096215
-
Inflammatory genital infections mitigate a severe genetic bottleneck in hetero-sexual transmission of subtype A and C HIV-1
-
PubMed PMID: 19165325. Pubmed Central PMCID: 2621345
-
Haaland RE, Hawkins PA, Salazar-Gonzalez J, Johnson A, Tichacek A, Karita E, Manigart O, Mulenga J, Keele BF, Shaw GM, Hahn BH, Allen SA, Derdeyn CA, Hunter E. Inflammatory genital infections mitigate a severe genetic bottleneck in hetero-sexual transmission of subtype A and C HIV-1. PLoS Pathog. 2009;5(1):e1000274. PubMed PMID: 19165325. Pubmed Central PMCID: 2621345. doi: 10.1371/journal. ppat.1000274
-
(2009)
PLoS Pathog
, vol.5
, Issue.1
, pp. e1000274
-
-
Haaland, RE1
Hawkins, PA2
Salazar-Gonzalez, J3
Johnson, A4
Tichacek, A5
Karita, E6
Manigart, O7
Mulenga, J8
Keele, BF9
Shaw, GM10
Hahn, BH11
Allen, SA12
Derdeyn, CA13
Hunter, E.14
-
4
-
-
44649102135
-
Identification and characterization of transmitted and early founder virus en-velopes in primary HIV-1 infection
-
PubMed PMID: 18490657. Pubmed Central PMCID: 2387184
-
Keele BF, Giorgi EE, Salazar-Gonzalez JF, Decker JM, Pham KT, Salazar MG, Sun C, Grayson T, Wang S, Li H, Wei X, Jiang C, Kirchherr JL, Gao F, Anderson JA, Ping LH, Swanstrom R, Tomaras GD, Blattner WA, Goepfert PA, Kilby JM, Saag MS, Delwart EL, Busch MP, Cohen MS, Montefiori DC, Haynes BF, Gaschen B, Athreya GS, Lee HY, Wood N, Seoighe C, Perelson AS, Bhattacharya T, Korber BT, Hahn BH, Shaw GM. Identification and characterization of transmitted and early founder virus en-velopes in primary HIV-1 infection. Proc Natl Acad Sci U S A. 2008;105(21):7552-7. PubMed PMID: 18490657. Pubmed Central PMCID: 2387184. doi: 10.1073/pnas.0802203105
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, Issue.21
, pp. 7552-7557
-
-
Keele, BF1
Giorgi, EE2
Salazar-Gonzalez, JF3
Decker, JM4
Pham, KT5
Salazar, MG6
Sun, C7
Grayson, T8
Wang, S9
Li, H10
Wei, X11
Jiang, C12
Kirchherr, JL13
Gao, F14
Anderson, JA15
Ping, LH16
Swanstrom, R17
Tomaras, GD18
Blattner, WA19
Goepfert, PA20
Kilby, JM21
Saag, MS22
Delwart, EL23
Busch, MP24
Cohen, MS25
Montefiori, DC26
Haynes, BF27
Gaschen, B28
Athreya, GS29
Lee, HY30
Wood, N31
Seoighe, C32
Perelson, AS33
Bhattacharya, T34
Korber, BT35
Hahn, BH36
Shaw, GM.37
more..
-
5
-
-
77954051000
-
High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men
-
PubMed PMID: 20485520. Pubmed Central PMCID: 2869329
-
Li H, Bar KJ, Wang S, Decker JM, Chen Y, Sun C, Salazar-Gonzalez JF, Salazar MG, Learn GH, Morgan CJ, Schumacher JE, Hraber P, Giorgi EE, Bhattacharya T, Korber BT, Perelson AS, Eron JJ, Cohen MS, Hicks CB, Haynes BF, Markowitz M, Keele BF, Hahn BH, Shaw GM. High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men. PLoS Pathog. 2010;6(5):e1000890. PubMed PMID: 20485520. Pubmed Central PMCID: 2869329. doi: 10.1371/journal.ppat.1000890
-
(2010)
PLoS Pathog
, vol.6
, Issue.5
, pp. e1000890
-
-
Li, H1
Bar, KJ2
Wang, S3
Decker, JM4
Chen, Y5
Sun, C6
Salazar-Gonzalez, JF7
Salazar, MG8
Learn, GH9
Morgan, CJ10
Schumacher, JE11
Hraber, P12
Giorgi, EE13
Bhattacharya, T14
Korber, BT15
Perelson, AS16
Eron, JJ17
Cohen, MS18
Hicks, CB19
Haynes, BF20
Markowitz, M21
Keele, BF22
Hahn, BH23
Shaw, GM.24
more..
-
6
-
-
41949124934
-
Deciphering human immunodeficiency virus type 1 transmission and early envelope diversificatioby single-genome amplification and sequencing
-
PubMePMID: 18256145. Pubmed Central PMCID: 2293010
-
Salazar-Gonzalez JF, Bailes E, Pham KT, Salazar MG, Guffey MB, Keele BF, Derdeyn CA, Farmer P, Hunter E, Allen S, Manigart O, Mulenga J, Anderson JA, Swanstrom R, Haynes BF, Athreya GS, Korber BT, Sharp PM, Shaw GM, Hahn BH. Deciphering human immunodeficiency virus type 1 transmission and early envelope diversificatioby single-genome amplification and sequencing. J Virol. 2008;82(8):3952-70. PubMePMID: 18256145. Pubmed Central PMCID: 2293010. doi: 10.1128/JVI.02660-07
-
(2008)
J Virol
, vol.82
, Issue.8
, pp. 3952-3970
-
-
Salazar-Gonzalez, JF1
Bailes, E2
Pham, KT3
Salazar, MG4
Guffey, MB5
Keele, BF6
Derdeyn, CA7
Farmer, P8
Hunter, E9
Allen, S10
Manigart, O11
Mulenga, J12
Anderson, JA13
Swanstrom, R14
Haynes, BF15
Athreya, GS16
Korber, BT17
Sharp, PM18
Shaw, GM19
Hahn, BH.20
more..
-
7
-
-
66049139947
-
Genetic identity, biological phenotype, and evolu-tionary pathways of transmitted/founder viruses in acute and early HIV-1 infection
-
PubMed PMID: 19487424. Pubmed Central PMCID: 2715054
-
Salazar-Gonzalez JF, Salazar MG, Keele BF, Learn GH, Giorgi EE, Li H, Decker JM, Wang S, Baalwa J, Kraus MH, Parrish NF, Shaw KS, Guffey MB, Bar KJ, Davis KL, Ochsenbauer-Jambor C, Kappes JC, Saag MS, Cohen MS, Mulenga J, Derdeyn CA, Allen S, Hunter E, Markowitz M, Hraber P, Perelson AS, Bhattacharya T, Haynes BF, Korber BT, Hahn BH, Shaw GM. Genetic identity, biological phenotype, and evolu-tionary pathways of transmitted/founder viruses in acute and early HIV-1 infection. J Exp Med. 2009;206(6):1273-89. PubMed PMID: 19487424. Pubmed Central PMCID: 2715054. doi: 10.1084/jem.20090378
-
(2009)
J Exp Med
, vol.206
, Issue.6
, pp. 1273-1289
-
-
Salazar-Gonzalez, JF1
Salazar, MG2
Keele, BF3
Learn, GH4
Giorgi, EE5
Li, H6
Decker, JM7
Wang, S8
Baalwa, J9
Kraus, MH10
Parrish, NF11
Shaw, KS12
Guffey, MB13
Bar, KJ14
Davis, KL15
Ochsenbauer-Jambor, C16
Kappes, JC17
Saag, MS18
Cohen, MS19
Mulenga, J20
Derdeyn, CA21
Allen, S22
Hunter, E23
Markowitz, M24
Hraber, P25
Perelson, AS26
Bhattacharya, T27
Haynes, BF28
Korber, BT29
Hahn, BH30
Shaw, GM.31
more..
-
8
-
-
19944428265
-
Multiple, linked human immunodeficiency virus type 1 drug resistance mutations in treat-ment-experienced patients are missed by standard genotype analysis
-
PubMed PMID: 15635002. Pubmed Central PMCID: 540111
-
Palmer S, Kearney M, Maldarelli F, Halvas EK, Bixby CJ, Bazmi H, Rock D, Falloon J, Davey RT, Jr., Dewar RL, Metcalf JA, Hammer S, Mellors JW, Coffin JM. Multiple, linked human immunodeficiency virus type 1 drug resistance mutations in treat-ment-experienced patients are missed by standard genotype analysis. J Clin Microbiol. 2005;43(1):406-13. PubMed PMID: 15635002. Pubmed Central PMCID: 540111. doi: 10.1128/JCM.43.1.406-413.2005
-
(2005)
J Clin Microbiol
, vol.43
, Issue.1
, pp. 406-413
-
-
Palmer, S1
Kearney, M2
Maldarelli, F3
Halvas, EK4
Bixby, CJ5
Bazmi, H6
Rock, D7
Falloon, J8
Davey, RT9
Dewar, RL10
Metcalf, JA11
Hammer, S12
Mellors, JW13
Coffin, JM.14
-
9
-
-
84929477041
-
Low Multiplicity of HIV-1 Infection and No Vaccine Enhancement in VAX003 Injection Drug Users
-
PubMed PMID: 25734126. Pubmed Central PMCID: 4281816
-
Sterrett S, Learn GH, Edlefsen PT, Haynes BF, Hahn BH, Shaw GM, Bar KJ. Low Multiplicity of HIV-1 Infection and No Vaccine Enhancement in VAX003 Injection Drug Users. Open Forum Infect Dis. 2014;1(2):ofu056. PubMed PMID: 25734126. Pubmed Central PMCID: 4281816. doi: 10.1093/ofid/ofu056
-
(2014)
Open Forum Infect Dis
, vol.1
, Issue.2
, pp. ofu056
-
-
Sterrett, S1
Learn, GH2
Edlefsen, PT3
Haynes, BF4
Hahn, BH5
Shaw, GM6
Bar, KJ.7
-
10
-
-
84863697528
-
Early low-titer neutralizing antibodies impede HIV-1 replication and select for virus escape
-
PubMed PMID: 22693447. Pubmed Central PMCID: 3364956
-
Bar KJ, Tsao CY, Iyer SS, Decker JM, Yang Y, Bonsignori M, Chen X, Hwang KK, Mon-tefiori DC, Liao HX, Hraber P, Fischer W, Li H, Wang S, Sterrett S, Keele BF, Ganusov VV, Perelson AS, Korber BT, Georgiev I, McLellan JS, Pavlicek JW, Gao F, Haynes BF, Hahn BH, Kwong PD, Shaw GM. Early low-titer neutralizing antibodies impede HIV-1 replication and select for virus escape. PLoS Pathog. 2012;8(5):e1002721. PubMed PMID: 22693447. Pubmed Central PMCID: 3364956. doi: 10.1371/journal. ppat.1002721
-
(2012)
PLoS Pathog
, vol.8
, Issue.5
, pp. e1002721
-
-
Bar, KJ1
Tsao, CY2
Iyer, SS3
Decker, JM4
Yang, Y5
Bonsignori, M6
Chen, X7
Hwang, KK8
Mon-tefiori, DC9
Liao, HX10
Hraber, P11
Fischer, W12
Li, H13
Wang, S14
Sterrett, S15
Keele, BF16
Ganusov, VV17
Perelson, AS18
Korber, BT19
Georgiev, I20
McLellan, JS21
Pavlicek, JW22
Gao, F23
Haynes, BF24
Hahn, BH25
Kwong, PD26
Shaw, GM.27
more..
-
11
-
-
67449147145
-
The first T cell response to transmitted/found-er virus contributes to the control of acute viremia in HIV-1 infection
-
PubMed PMID: 19487423. Pubmed Central PMCID: 2715063
-
Goonetilleke N, Liu MK, Salazar-Gonzalez JF, Ferrari G, Giorgi E, Ganusov VV, Keele BF, Learn GH, Turnbull EL, Salazar MG, Weinhold KJ, Moore S, B CCC, Letvin N, Haynes BF, Cohen MS, Hraber P, Bhattacharya T, Borrow P, Perelson AS, Hahn BH, Shaw GM, Korber BT, McMichael AJ. The first T cell response to transmitted/found-er virus contributes to the control of acute viremia in HIV-1 infection. J Exp Med. 2009;206(6):1253-72. PubMed PMID: 19487423. Pubmed Central PMCID: 2715063. doi: 10.1084/jem.20090365
-
(2009)
J Exp Med
, vol.206
, Issue.6
, pp. 1253-1272
-
-
Goonetilleke, N1
Liu, MK2
Salazar-Gonzalez, JF3
Ferrari, G4
Giorgi, E5
Ganusov, VV6
Keele, BF7
Learn, GH8
Turnbull, EL9
Salazar, MG10
Weinhold, KJ11
Moore, S12
CCC, B13
Letvin, N14
Haynes, BF15
Cohen, MS16
Hraber, P17
Bhattacharya, T18
Borrow, P19
Perelson, AS20
Hahn, BH21
Shaw, GM22
Korber, BT23
McMichael, AJ.24
more..
-
12
-
-
84883459724
-
Sieve analysis in HIV-1 vaccine efficacy trials
-
PubMed PMID: 23719202. Pubmed Central PMCID: 3863593
-
Edlefsen PT, Gilbert PB, Rolland M. Sieve analysis in HIV-1 vaccine efficacy trials. Curr Opin HIV AIDS. 2013;8(5):432-6. PubMed PMID: 23719202. Pubmed Central PMCID: 3863593. doi: 10.1097/COH.0b013e328362db2b
-
(2013)
Curr Opin HIV AIDS
, vol.8
, Issue.5
, pp. 432-436
-
-
Edlefsen, PT1
Gilbert, PB2
Rolland, M.3
-
13
-
-
84995610492
-
Comprehensive sieve analysis of breakthrough HIV-1 sequences in the RV144 vaccine efficacy trial
-
PubMed PMID: 25646817. Pubmed Central PMCID: 4315437
-
Edlefsen PT, Rolland M, Hertz T, Tovanabutra S, Gartland AJ, deCamp AC, Magaret CA, Ahmed H, Gottardo R, Juraska M, McCoy C, Larsen BB, Sanders-Buell E, Carri-co C, Menis S, Bose M, Team RVS, Arroyo MA, O’Connell RJ, Nitayaphan S, Pitisut-tithum P, Kaewkungwal J, Rerks-Ngarm S, Robb ML, Kirys T, Georgiev IS, Kwong PD, Scheffler K, Pond SL, Carlson JM, Michael NL, Schief WR, Mullins JI, Kim JH, Gilbert PB. Comprehensive sieve analysis of breakthrough HIV-1 sequences in the RV144 vaccine efficacy trial. PLoS Comput Biol. 2015;11(2):e1003973. PubMed PMID: 25646817. Pubmed Central PMCID: 4315437. doi: 10.1371/journal.pcbi.1003973
-
(2015)
PLoS Comput Biol
, vol.11
, Issue.2
, pp. e1003973
-
-
Edlefsen, PT1
Rolland, M2
Hertz, T3
Tovanabutra, S4
Gartland, AJ5
deCamp, AC6
Magaret, CA7
Ahmed, H8
Gottardo, R9
Juraska, M10
McCoy, C11
Larsen, BB12
Sanders-Buell, E13
Carri-co, C14
Menis, S15
Bose, M16
Team, RVS17
Arroyo, MA18
O’Connell, RJ19
Nitayaphan, S20
Pitisut-tithum, P21
Kaewkungwal, J22
Rerks-Ngarm, S23
Robb, ML24
Kirys, T25
Georgiev, IS26
Kwong, PD27
Scheffler, K28
Pond, SL29
Carlson, JM30
Michael, NL31
Schief, WR32
Mullins, JI33
Kim, JH34
Gilbert, PB.35
more..
-
14
-
-
84867653590
-
Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2
-
PubMed PMID: 22960785. Pubmed Central PMCID: 3551291
-
Rolland M, Edlefsen PT, Larsen BB, Tovanabutra S, Sanders-Buell E, Hertz T, deCamp AC, Carrico C, Menis S, Magaret CA, Ahmed H, Juraska M, Chen L, Konopa P, Nariya S, Stoddard JN, Wong K, Zhao H, Deng W, Maust BS, Bose M, Howell S, Bates A, Lazzaro M, O’Sullivan A, Lei E, Bradfield A, Ibitamuno G, Assawadarachai V, O’Con-nell RJ, deSouza MS, Nitayaphan S, Rerks-Ngarm S, Robb ML, McLellan JS, Georgiev I, Kwong PD, Carlson JM, Michael NL, Schief WR, Gilbert PB, Mullins JI, Kim JH. Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2. Nature. 2012;490(7420):417-20. PubMed PMID: 22960785. Pubmed Central PMCID: 3551291. doi: 10.1038/nature11519
-
(2012)
Nature
, vol.490
, Issue.7420
, pp. 417-420
-
-
Rolland, M1
Edlefsen, PT2
Larsen, BB3
Tovanabutra, S4
Sanders-Buell, E5
Hertz, T6
deCamp, AC7
Carrico, C8
Menis, S9
Magaret, CA10
Ahmed, H11
Juraska, M12
Chen, L13
Konopa, P14
Nariya, S15
Stoddard, JN16
Wong, K17
Zhao, H18
Deng, W19
Maust, BS20
Bose, M21
Howell, S22
Bates, A23
Lazzaro, M24
O’Sullivan, A25
Lei, E26
Bradfield, A27
Ibitamuno, G28
Assawadarachai, V29
O’Con-nell, RJ30
deSouza, MS31
Nitayaphan, S32
Rerks-Ngarm, S33
Robb, ML34
McLellan, JS35
Georgiev, I36
Kwong, PD37
Carlson, JM38
Michael, NL39
Schief, WR40
Gilbert, PB41
Mullins, JI42
Kim, JH.43
more..
-
15
-
-
79952445068
-
Genetic impact of vaccination on breakthrough HIV-1 sequences from the STEP trial
-
PubMed PMID: 21358627. Pubmed Central PMCID: 3053571
-
Rolland M, Tovanabutra S, deCamp AC, Frahm N, Gilbert PB, Sanders-Buell E, Heath L, Magaret CA, Bose M, Bradfield A, O’Sullivan A, Crossler J, Jones T, Nau M, Wong K, Zhao H, Raugi DN, Sorensen S, Stoddard JN, Maust BS, Deng W, Hural J, Dubey S, Michael NL, Shiver J, Corey L, Li F, Self SG, Kim J, Buchbinder S, Casimiro DR, Robertson MN, Duerr A, McElrath MJ, McCutchan FE, Mullins JI. Genetic impact of vaccination on breakthrough HIV-1 sequences from the STEP trial. Nat Med. 2011;17(3):366-71. PubMed PMID: 21358627. Pubmed Central PMCID: 3053571. doi: 10.1038/nm.2316
-
(2011)
Nat Med
, vol.17
, Issue.3
, pp. 366-371
-
-
Rolland, M1
Tovanabutra, S2
deCamp, AC3
Frahm, N4
Gilbert, PB5
Sanders-Buell, E6
Heath, L7
Magaret, CA8
Bose, M9
Bradfield, A10
O’Sullivan, A11
Crossler, J12
Jones, T13
Nau, M14
Wong, K15
Zhao, H16
Raugi, DN17
Sorensen, S18
Stoddard, JN19
Maust, BS20
Deng, W21
Hural, J22
Dubey, S23
Michael, NL24
Shiver, J25
Corey, L26
Li, F27
Self, SG28
Kim, J29
Buchbinder, S30
Casimiro, DR31
Robertson, MN32
Duerr, A33
McElrath, MJ34
McCutchan, FE35
Mullins, JI.36
more..
-
16
-
-
84892786095
-
Immunological and virological mechanisms of vaccine-medi-ated protection against SIV and HIV
-
PubMed PMID: 24352234. Pubmed Central PMCID: 3946913
-
Roederer M, Keele BF, Schmidt SD, Mason RD, Welles HC, Fischer W, Labranche C, Foulds KE, Louder MK, Yang ZY, Todd JP, Buzby AP, Mach LV, Shen L, Seaton KE, Ward BM, Bailer RT, Gottardo R, Gu W, Ferrari G, Alam SM, Denny TN, Montefiori DC, Tomaras GD, Korber BT, Nason MC, Seder RA, Koup RA, Letvin NL, Rao SS, Nabel GJ, Mascola JR. Immunological and virological mechanisms of vaccine-medi-ated protection against SIV and HIV. Nature. 2014;505(7484):502-8. PubMed PMID: 24352234. Pubmed Central PMCID: 3946913. doi: 10.1038/nature12893
-
(2014)
Nature
, vol.505
, Issue.7484
, pp. 502-508
-
-
Roederer, M1
Keele, BF2
Schmidt, SD3
Mason, RD4
Welles, HC5
Fischer, W6
Labranche, C7
Foulds, KE8
Louder, MK9
Yang, ZY10
Todd, JP11
Buzby, AP12
Mach, LV13
Shen, L14
Seaton, KE15
Ward, BM16
Bailer, RT17
Gottardo, R18
Gu, W19
Ferrari, G20
Alam, SM21
Denny, TN22
Montefiori, DC23
Tomaras, GD24
Korber, BT25
Nason, MC26
Seder, RA27
Koup, RA28
Letvin, NL29
Rao, SS30
Nabel, GJ31
Mascola, JR.32
more..
-
17
-
-
84949921490
-
Breakthrough Virus Neutralization Resistance as a Correlate of Protection in a Nonhuman Primate Heterologous Simian Immunodeficiency Virus Vaccine Challenge Study
-
PubMed PMID: 26423953. Pubmed Central PMCID: 4665252
-
Lee FH, Mason R, Welles H, Learn GH, Keele BF, Roederer M, Bar KJ. Breakthrough Virus Neutralization Resistance as a Correlate of Protection in a Nonhuman Primate Heterologous Simian Immunodeficiency Virus Vaccine Challenge Study. J Virol. 2015;89(24):12388-400. PubMed PMID: 26423953. Pubmed Central PMCID: 4665252. doi: 10.1128/JVI.01531-15
-
(2015)
J Virol
, vol.89
, Issue.24
, pp. 12388-12400
-
-
Lee, FH1
Mason, R2
Welles, H3
Learn, GH4
Keele, BF5
Roederer, M6
Bar, KJ.7
-
18
-
-
84928405730
-
Viraemia suppressed in HIV-1-infected humans by broadly neutralizing antibody 3BNC117
-
PubMed PMID: 25855300
-
Caskey M, Klein F, Lorenzi JC, Seaman MS, West AP, Jr., Buckley N, Kremer G, Nogueira L, Braunschweig M, Scheid JF, Horwitz JA, Shimeliovich I, Ben-Avraham S, Witmer-Pack M, Platten M, Lehmann C, Burke LA, Hawthorne T, Gorelick RJ, Walker BD, Keler T, Gulick RM, Fatkenheuer G, Schlesinger SJ, Nussenzweig MC. Viraemia suppressed in HIV-1-infected humans by broadly neutralizing antibody 3BNC117. Nature. 2015;522(7557):487-91. PubMed PMID: 25855300. doi: 10.1038/nature14411
-
(2015)
Nature
, vol.522
, Issue.7557
, pp. 487-491
-
-
Caskey, M1
Klein, F2
Lorenzi, JC3
Seaman, MS4
West, AP5
Buckley, N6
Kremer, G7
Nogueira, L8
Braunschweig, M9
Scheid, JF10
Horwitz, JA11
Shimeliovich, I12
Ben-Avraham, S13
Witmer-Pack, M14
Platten, M15
Lehmann, C16
Burke, LA17
Hawthorne, T18
Gorelick, RJ19
Walker, BD20
Keler, T21
Gulick, RM22
Fatkenheuer, G23
Schlesinger, SJ24
Nussenzweig, MC.25
more..
-
19
-
-
84906970468
-
Antiretroviral-free HIV-1 remission and viral rebound after allogeneic stem cell transplantation: report of 2 cases
-
PubMed PMID: 25047577. Pubmed Central PMCID: 4236912
-
Henrich TJ, Hanhauser E, Marty FM, Sirignano MN, Keating S, Lee TH, Robles YP, Davis BT, Li JZ, Heisey A, Hill AL, Busch MP, Armand P, Soiffer RJ, Altfeld M, Kuritz-kes DR. Antiretroviral-free HIV-1 remission and viral rebound after allogeneic stem cell transplantation: report of 2 cases. Ann Intern Med. 2014;161(5):319-27. PubMed PMID: 25047577. Pubmed Central PMCID: 4236912. doi: 10.7326/M14-1027
-
(2014)
Ann Intern Med
, vol.161
, Issue.5
, pp. 319-327
-
-
Henrich, TJ1
Hanhauser, E2
Marty, FM3
Sirignano, MN4
Keating, S5
Lee, TH6
Robles, YP7
Davis, BT8
Li, JZ9
Heisey, A10
Hill, AL11
Busch, MP12
Armand, P13
Soiffer, RJ14
Altfeld, M15
Kuritz-kes, DR.16
-
20
-
-
84954445565
-
Virologic effects of broadly neutralizing antibody VRC01 administration during chronic HIV-1 infection
-
PubMed PMID: 26702094
-
Lynch RM, Boritz E, Coates EE, DeZure A, Madden P, Costner P, Enama ME, Plum-mer S, Holman L, Hendel CS, Gordon I, Casazza J, Conan-Cibotti M, Migueles SA, Tressler R, Bailer RT, McDermott A, Narpala S, O’Dell S, Wolf G, Lifson JD, Freemire BA, Gorelick RJ, Pandey JP, Mohan S, Chomont N, Fromentin R, Chun TW, Fauci AS, Schwartz RM, Koup RA, Douek DC, Hu Z, Capparelli E, Graham BS, Mascola JR, Ledgerwood JE, Team VRCS. Virologic effects of broadly neutralizing antibody VRC01 administration during chronic HIV-1 infection. Sci Transl Med. 2015;7(319):319ra206. PubMed PMID: 26702094. doi: 10.1126/scitranslmed.aad5752
-
(2015)
Sci Transl Med
, vol.7
, Issue.319
, pp. 319ra206
-
-
Lynch, RM1
Boritz, E2
Coates, EE3
DeZure, A4
Madden, P5
Costner, P6
Enama, ME7
Plum-mer, S8
Holman, L9
Hendel, CS10
Gordon, I11
Casazza, J12
Conan-Cibotti, M13
Migueles, SA14
Tressler, R15
Bailer, RT16
McDermott, A17
Narpala, S18
O’Dell, S19
Wolf, G20
Lifson, JD21
Freemire, BA22
Gorelick, RJ23
Pandey, JP24
Mohan, S25
Chomont, N26
Fromentin, R27
Chun, TW28
Fauci, AS29
Schwartz, RM30
Koup, RA31
Douek, DC32
Hu, Z33
Capparelli, E34
Graham, BS35
Mascola, JR36
Ledgerwood, JE37
Team, VRCS.38
more..
-
21
-
-
79955705373
-
Dried blood spots for HIV-1 drug resistance and viral load testing: A review of current knowledge and WHO efforts for global HIV drug resistance surveillance
-
PubMed PMID: 21179184
-
Bertagnolio S, Parkin NT, Jordan M, Brooks J, Garcia-Lerma JG. Dried blood spots for HIV-1 drug resistance and viral load testing: A review of current knowledge and WHO efforts for global HIV drug resistance surveillance. AIDS Rev. 2010;12(4):195208. PubMed PMID: 21179184.
-
(2010)
AIDS Rev
, vol.12
, Issue.4
, pp. 195208
-
-
Bertagnolio, S1
Parkin, NT2
Jordan, M3
Brooks, J4
Garcia-Lerma, JG.5
-
22
-
-
36348939264
-
High concordance between HIV-1 drug resis-tance genotypes generated from plasma and dried blood spots in antiretroviral-expe-rienced patients
-
PubMed PMID: 18025887
-
Masciotra S, Garrido C, Youngpairoj AS, McNulty A, Zahonero N, Corral A, Heneine W, de Mendoza C, Garcia-Lerma JG. High concordance between HIV-1 drug resis-tance genotypes generated from plasma and dried blood spots in antiretroviral-expe-rienced patients. AIDS. 2007;21(18):2503-11. PubMed PMID: 18025887. doi: 10.1097/QAD.0b013e3281c618db
-
(2007)
AIDS
, vol.21
, Issue.18
, pp. 2503-2511
-
-
Masciotra, S1
Garrido, C2
Youngpairoj, AS3
McNulty, A4
Zahonero, N5
Corral, A6
Heneine, W7
de Mendoza, C8
Garcia-Lerma, JG.9
-
23
-
-
84859034045
-
Dried blood spot specimens are a suitable alternative sample type for HIV-1 viral load measurement and drug resistance genotyping in patients receiving first-line antiretroviral therapy
-
PubMed PMID: 22412066
-
Rottinghaus EK, Ugbena R, Diallo K, Bassey O, Azeez A, Devos J, Zhang G, Aber-le-Grasse J, Nkengasong J, Yang C. Dried blood spot specimens are a suitable alternative sample type for HIV-1 viral load measurement and drug resistance genotyping in patients receiving first-line antiretroviral therapy. Clin Infect Dis. 2012;54(8):1187-95. PubMed PMID: 22412066. doi: 10.1093/cid/cis015
-
(2012)
Clin Infect Dis
, vol.54
, Issue.8
, pp. 1187-1195
-
-
Rottinghaus, EK1
Ugbena, R2
Diallo, K3
Bassey, O4
Azeez, A5
Devos, J6
Zhang, G7
Aber-le-Grasse, J8
Nkengasong, J9
Yang, C.10
-
24
-
-
84897469181
-
Systematic review of the use of dried blood spots for monitoring HIV viral load and for early infant diagnosis
-
PubMed PMID: 24603442. Pubmed Central PMCID: 3945725
-
Smit PW, Sollis KA, Fiscus S, Ford N, Vitoria M, Essajee S, Barnett D, Cheng B, Crowe SM, Denny T, Landay A, Stevens W, Habiyambere V, Perriens JH, Peeling RW. Systematic review of the use of dried blood spots for monitoring HIV viral load and for early infant diagnosis. PLoS One. 2014;9(3):e86461. PubMed PMID: 24603442. Pubmed Central PMCID: 3945725. doi: 10.1371/journal.pone.0086461
-
(2014)
PLoS One
, vol.9
, Issue.3
, pp. e86461
-
-
Smit, PW1
Sollis, KA2
Fiscus, S3
Ford, N4
Vitoria, M5
Essajee, S6
Barnett, D7
Cheng, B8
Crowe, SM9
Denny, T10
Landay, A11
Stevens, W12
Habiyambere, V13
Perriens, JH14
Peeling, RW.15
-
25
-
-
22144469748
-
Usage of dried blood spots for molecular diagnosis and monitoring HIV-1 infection
-
PubMed PMID: 15913797
-
Uttayamakul S, Likanonsakul S, Sunthornkachit R, Kuntiranont K, Loui-sirirotchanakul S, Chaovavanich A, Thiamchai V, Tanprasertsuk S, Sutthent R. Usage of dried blood spots for molecular diagnosis and monitoring HIV-1 infection. J Virol Methods. 2005;128(1-2):128-34. PubMed PMID: 15913797. doi: 10.1016/j.jvirom-et.2005.04.010
-
(2005)
J Virol Methods
, vol.128
, Issue.1-2
, pp. 128-134
-
-
Uttayamakul, S1
Likanonsakul, S2
Sunthornkachit, R3
Kuntiranont, K4
Loui-sirirotchanakul, S5
Chaovavanich, A6
Thiamchai, V7
Tanprasertsuk, S8
Sutthent, R.9
-
26
-
-
33847071584
-
Evaluation of dried blood spots for human immu-nodeficiency virus type 1 drug resistance testing
-
PubMed PMID: 17166967. Pubmed Central PMCID: 1829056
-
McNulty A, Jennings C, Bennett D, Fitzgibbon J, Bremer JW, Ussery M, Kalish ML, Heneine W, Garcia-Lerma JG. Evaluation of dried blood spots for human immu-nodeficiency virus type 1 drug resistance testing. J Clin Microbiol. 2007;45(2):517-21. PubMed PMID: 17166967. Pubmed Central PMCID: 1829056. doi: 10.1128/JCM.02016-06
-
(2007)
J Clin Microbiol
, vol.45
, Issue.2
, pp. 517-521
-
-
McNulty, A1
Jennings, C2
Bennett, D3
Fitzgibbon, J4
Bremer, JW5
Ussery, M6
Kalish, ML7
Heneine, W8
Garcia-Lerma, JG.9
-
27
-
-
44449128907
-
HIV-1 drug resistance genotyping from dried blood spots stored for 1 year at 4 degrees C
-
PubMed PMID: 18344550. Pubmed Central PMCID: 2386080
-
Youngpairoj AS, Masciotra S, Garrido C, Zahonero N, de Mendoza C, Garcia-Lerma JG. HIV-1 drug resistance genotyping from dried blood spots stored for 1 year at 4 degrees C. J Antimicrob Chemother. 2008;61(6):1217-20. PubMed PMID: 18344550. Pubmed Central PMCID: 2386080. doi: 10.1093/jac/dkn100
-
(2008)
J Antimicrob Chemother
, vol.61
, Issue.6
, pp. 1217-1220
-
-
Youngpairoj, AS1
Masciotra, S2
Garrido, C3
Zahonero, N4
de Mendoza, C5
Garcia-Lerma, JG.6
-
29
-
-
84898944121
-
Single genome amplification of proviral HIV-1 DNA from dried blood spot specimens collected during early infant screening programs in Lusaka, Zambia
-
PubMed PMID: 24667303. Pubmed Central PMCID: 4024391
-
Seu L, Mwape I, Guffey MB. Single genome amplification of proviral HIV-1 DNA from dried blood spot specimens collected during early infant screening programs in Lusaka, Zambia. J Virol Methods. 2014;203:97-101. PubMed PMID: 24667303. Pubmed Central PMCID: 4024391. doi: 10.1016/j.jviromet.2014.03.001
-
(2014)
J Virol Methods
, vol.203
, pp. 97-101
-
-
Seu, L1
Mwape, I2
Guffey, MB.3
-
30
-
-
84861214061
-
Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection
-
PubMed PMID: 22412369. Pubmed Central PM-CID: 3297584
-
Henn MR, Boutwell CL, Charlebois P, Lennon NJ, Power KA, Macalalad AR, Berlin AM, Malboeuf CM, Ryan EM, Gnerre S, Zody MC, Erlich RL, Green LM, Berical A, Wang Y, Casali M, Streeck H, Bloom AK, Dudek T, Tully D, Newman R, Axten KL, Gladden AD, Battis L, Kemper M, Zeng Q, Shea TP, Gujja S, Zedlack C, Gasser O, Brander C, Hess C, Gunthard HF, Brumme ZL, Brumme CJ, Bazner S, Rychert J, Tins-ley JP, Mayer KH, Rosenberg E, Pereyra F, Levin JZ, Young SK, Jessen H, Altfeld M, Birren BW, Walker BD, Allen TM. Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection. PLoS Pathog. 2012;8(3):e1002529. PubMed PMID: 22412369. Pubmed Central PM-CID: 3297584. doi: 10.1371/journal.ppat.1002529
-
(2012)
PLoS Pathog
, vol.8
, Issue.3
, pp. e1002529
-
-
Henn, MR1
Boutwell, CL2
Charlebois, P3
Lennon, NJ4
Power, KA5
Macalalad, AR6
Berlin, AM7
Malboeuf, CM8
Ryan, EM9
Gnerre, S10
Zody, MC11
Erlich, RL12
Green, LM13
Berical, A14
Wang, Y15
Casali, M16
Streeck, H17
Bloom, AK18
Dudek, T19
Tully, D20
Newman, R21
Axten, KL22
Gladden, AD23
Battis, L24
Kemper, M25
Zeng, Q26
Shea, TP27
Gujja, S28
Zedlack, C29
Gasser, O30
Brander, C31
Hess, C32
Gunthard, HF33
Brumme, ZL34
Brumme, CJ35
Bazner, S36
Rychert, J37
Tins-ley, JP38
Mayer, KH39
Rosenberg, E40
Pereyra, F41
Levin, JZ42
Young, SK43
Jessen, H44
Altfeld, M45
Birren, BW46
Walker, BD47
Allen, TM.48
more..
-
31
-
-
84866113768
-
De novo assembly of highly diverse viral populations
-
PubMed PMID: 22974120. Pubmed Central PMCID: 3469330
-
Yang X, Charlebois P, Gnerre S, Coole MG, Lennon NJ, Levin JZ, Qu J, Ryan EM, Zody MC, Henn MR. De novo assembly of highly diverse viral populations. BMC Ge-nomics. 2012;13:475. PubMed PMID: 22974120. Pubmed Central PMCID: 3469330. doi: 10.1186/1471-2164-13-475
-
(2012)
BMC Ge-nomics
, vol.13
, pp. 475
-
-
Yang, X1
Charlebois, P2
Gnerre, S3
Coole, MG4
Lennon, NJ5
Levin, JZ6
Qu, J7
Ryan, EM8
Zody, MC9
Henn, MR.10
-
32
-
-
84861108474
-
Highly sensitive and specific detection of rare variants in mixed viral populations from massively parallel sequence data
-
PubMed PMID: 22438797. Pubmed Central PMCID: 3305335
-
Macalalad AR, Zody MC, Charlebois P, Lennon NJ, Newman RM, Malboeuf CM, Ryan EM, Boutwell CL, Power KA, Brackney DE, Pesko KN, Levin JZ, Ebel GD, Allen TM, Birren BW, Henn MR. Highly sensitive and specific detection of rare variants in mixed viral populations from massively parallel sequence data. PLoS Comput Biol. 2012;8(3):e1002417. PubMed PMID: 22438797. Pubmed Central PMCID: 3305335. doi: 10.1371/journal.pcbi.1002417
-
(2012)
PLoS Comput Biol
, vol.8
, Issue.3
, pp. e1002417
-
-
Macalalad, AR1
Zody, MC2
Charlebois, P3
Lennon, NJ4
Newman, RM5
Malboeuf, CM6
Ryan, EM7
Boutwell, CL8
Power, KA9
Brackney, DE10
Pesko, KN11
Levin, JZ12
Ebel, GD13
Allen, TM14
Birren, BW15
Henn, MR.16
-
33
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
PubMed PMID: 17846036
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Val-entin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. Clustal W and Clustal X version 2.0. Bioinformatics. 2007;23(21):2947-8. PubMed PMID: 17846036. doi: 10.1093/bioinformatics/btm404
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2947-2948
-
-
Larkin, MA1
Blackshields, G2
Brown, NP3
Chenna, R4
McGettigan, PA5
McWilliam, H6
Val-entin, F7
Wallace, IM8
Wilm, A9
Lopez, R10
Thompson, JD11
Gibson, TJ12
Higgins, DG.13
-
34
-
-
77950806408
-
New algo-rithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
PubMed PMID: 20525638
-
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. New algo-rithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol. 2010;59(3):307-21. PubMed PMID: 20525638. doi: 10.1093/sysbio/syq010
-
(2010)
Syst Biol
, vol.59
, Issue.3
, pp. 307-321
-
-
Guindon, S1
Dufayard, JF2
Lefort, V3
Anisimova, M4
Hordijk, W5
Gascuel, O.6
-
35
-
-
0034124124
-
Detecting hypermutations in viral sequences with an emphasis on G--> A hypermutation
-
PubMed PMID: 10869039
-
Rose PP, Korber BT. Detecting hypermutations in viral sequences with an emphasis on G--> A hypermutation. Bioinformatics. 2000;16(4):400-1. PubMed PMID: 10869039.
-
(2000)
Bioinformatics
, vol.16
, Issue.4
, pp. 400-401
-
-
Rose, PP1
Korber, BT.2
-
36
-
-
70349778470
-
Modeling sequence evolution in acute HIV-1 infec-tion
-
PubMed PMID: 19660475. Pubmed Central PMCID: 2760689
-
Lee HY, Giorgi EE, Keele BF, Gaschen B, Athreya GS, Salazar-Gonzalez JF, Pham KT, Goepfert PA, Kilby JM, Saag MS, Delwart EL, Busch MP, Hahn BH, Shaw GM, Korber BT, Bhattacharya T, Perelson AS. Modeling sequence evolution in acute HIV-1 infec-tion. J Theor Biol. 2009;261(2):341-60. PubMed PMID: 19660475. Pubmed Central PMCID: 2760689. doi: 10.1016/j.jtbi.2009.07.038
-
(2009)
J Theor Biol
, vol.261
, Issue.2
, pp. 341-360
-
-
Lee, HY1
Giorgi, EE2
Keele, BF3
Gaschen, B4
Athreya, GS5
Salazar-Gonzalez, JF6
Pham, KT7
Goepfert, PA8
Kilby, JM9
Saag, MS10
Delwart, EL11
Busch, MP12
Hahn, BH13
Shaw, GM14
Korber, BT15
Bhattacharya, T16
Perelson, AS.17
-
37
-
-
15844406550
-
HyPhy: hypothesis testing using phylogenies
-
PubMed PMID: 15509596
-
Pond SL, Frost SD, Muse SV. HyPhy: hypothesis testing using phylogenies. Bioinfor-matics. 2005;21(5):676-9. PubMed PMID: 15509596. doi: 10.1093/bioinformatics/bti079
-
(2005)
Bioinfor-matics
, vol.21
, Issue.5
, pp. 676-679
-
-
Pond, SL1
Frost, SD2
Muse, SV.3
-
38
-
-
0024520628
-
Detecting small amounts of gene flow from phylogenies of alleles
-
PubMed PMID: 2714639. Pubmed Central PMCID: 1203644
-
Slatkin M. Detecting small amounts of gene flow from phylogenies of alleles. Genetic1989;121(3):609-12. PubMed PMID: 2714639. Pubmed Central PMCID: 1203644.
-
Genetic1989
, vol.121
, Issue.3
, pp. 609-612
-
-
Slatkin, M.1
-
39
-
-
84871651768
-
A note on two-sample tests for comparing intra-individual genetic sequence diversity between populations
-
author reply 6. PubMed PMID: 23004569. Pubmed Central PMCID: PMC3652673
-
Giorgi EE, Bhattacharya T. A note on two-sample tests for comparing intra-individual genetic sequence diversity between populations. Biometrics. 2012;68(4):1323-6; author reply 6. PubMed PMID: 23004569. Pubmed Central PMCID: PMC3652673. doi: 10.1111/j.1541-0420.2012.01775.x
-
(2012)
Biometrics
, vol.68
, Issue.4
, pp. 1323-1326
-
-
Giorgi, EE1
Bhattacharya, T.2
-
40
-
-
65249136428
-
Evaluation of different RNA extraction methods and storage conditions of dried plasma or blood spots for human immunodeficiency virus type 1 RNA quantification and PCR amplification for drug resistance testing
-
PubMed PMID: 19193835. Pubmed Central PMCID: 2668360
-
Monleau M, Montavon C, Laurent C, Segondy M, Montes B, Delaporte E, Boillot F, Peeters M. Evaluation of different RNA extraction methods and storage conditions of dried plasma or blood spots for human immunodeficiency virus type 1 RNA quantification and PCR amplification for drug resistance testing. J Clin Microbiol. 2009;47(4):1107-18. PubMed PMID: 19193835. Pubmed Central PMCID: 2668360. doi: 10.1128/JCM.02255-08
-
(2009)
J Clin Microbiol
, vol.47
, Issue.4
, pp. 1107-1118
-
-
Monleau, M1
Montavon, C2
Laurent, C3
Segondy, M4
Montes, B5
Delaporte, E6
Boillot, F7
Peeters, M.8
-
41
-
-
79952374124
-
Center for HIVAVIA. Origin and evolution of HIV-1 in breast milk determined by single-genome amplification and sequencing
-
PubMed PMID: 21191008. Pubmed Central PMCID: 3067940
-
Salazar-Gonzalez JF, Salazar MG, Learn GH, Fouda GG, Kang HH, Mahlokozera T, Wilks AB, Lovingood RV, Stacey A, Kalilani L, Meshnick SR, Borrow P, Montefiori DC, Denny TN, Letvin NL, Shaw GM, Hahn BH, Permar SR, Center for HIVAVIA. Origin and evolution of HIV-1 in breast milk determined by single-genome amplification and sequencing. J Virol. 2011;85(6):2751-63. PubMed PMID: 21191008. Pubmed Central PMCID: 3067940. doi: 10.1128/JVI.02316-10
-
(2011)
J Virol
, vol.85
, Issue.6
, pp. 2751-2763
-
-
Salazar-Gonzalez, JF1
Salazar, MG2
Learn, GH3
Fouda, GG4
Kang, HH5
Mahlokozera, T6
Wilks, AB7
Lovingood, RV8
Stacey, A9
Kalilani, L10
Meshnick, SR11
Borrow, P12
Montefiori, DC13
Denny, TN14
Letvin, NL15
Shaw, GM16
Hahn, BH17
Permar, SR18
-
42
-
-
84863696607
-
Transmitted/founder and chronic subtype C HIV-1 use CD4 and CCR5 receptors with equal efficiency and are not inhibited by blocking the integrin alpha4beta7
-
PubMed PMID: 22693444. Pubmed Central PMCID: 3364951
-
Parrish NF, Wilen CB, Banks LB, Iyer SS, Pfaff JM, Salazar-Gonzalez JF, Salazar MG, Decker JM, Parrish EH, Berg A, Hopper J, Hora B, Kumar A, Mahlokozera T, Yuan S, Coleman C, Vermeulen M, Ding H, Ochsenbauer C, Tilton JC, Permar SR, Kappes JC, Betts MR, Busch MP, Gao F, Montefiori D, Haynes BF, Shaw GM, Hahn BH, Doms RW. Transmitted/founder and chronic subtype C HIV-1 use CD4 and CCR5 receptors with equal efficiency and are not inhibited by blocking the integrin alpha4beta7. PLoS Pathog. 2012;8(5):e1002686. PubMed PMID: 22693444. Pubmed Central PMCID: 3364951. doi: 10.1371/journal.ppat.1002686
-
(2012)
PLoS Pathog
, vol.8
, Issue.5
, pp. e1002686
-
-
Parrish, NF1
Wilen, CB2
Banks, LB3
Iyer, SS4
Pfaff, JM5
Salazar-Gonzalez, JF6
Salazar, MG7
Decker, JM8
Parrish, EH9
Berg, A10
Hopper, J11
Hora, B12
Kumar, A13
Mahlokozera, T14
Yuan, S15
Coleman, C16
Vermeulen, M17
Ding, H18
Ochsenbauer, C19
Tilton, JC20
Permar, SR21
Kappes, JC22
Betts, MR23
Busch, MP24
Gao, F25
Montefiori, D26
Haynes, BF27
Shaw, GM28
Hahn, BH29
Doms, RW.30
more..
-
43
-
-
77958143449
-
Es-timating time since infection in early homogeneous HIV-1 samples using a poisson model
-
PubMed PMID: 20973976. Pubmed Central PMCID: 2975664
-
Giorgi EE, Funkhouser B, Athreya G, Perelson AS, Korber BT, Bhattacharya T. Es-timating time since infection in early homogeneous HIV-1 samples using a poisson model. BMC Bioinformatics. 2010;11:532. PubMed PMID: 20973976. Pubmed Central PMCID: 2975664. doi: 10.1186/1471-2105-11-532
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 532
-
-
Giorgi, EE1
Funkhouser, B2
Athreya, G3
Perelson, AS4
Korber, BT5
Bhattacharya, T.6
-
44
-
-
84872366098
-
-
World Health Organization. March 2010. Geneva, Switzerland: World Health Organization
-
World Health Organization. Manual for drug resistance testing using dried blood spot specimens, March 2010. Geneva, Switzerland: World Health Organization; 2010. http://www.who.int/hiv/topics/drugresistance/dbs_protocol.pdf
-
(2010)
Manual for drug resistance testing using dried blood spot specimens
-
-
-
45
-
-
67249150479
-
Rapid decline in the efficiency of HIV drug resistance genotyping from dried blood spots (DBS) and dried plasma spots (DPS) stored at 37 degrees C and high humidity
-
PubMed PMID: 19403653. Pubmed Central PMCID: 2692501
-
Garcia-Lerma JG, McNulty A, Jennings C, Huang D, Heneine W, Bremer JW. Rapid decline in the efficiency of HIV drug resistance genotyping from dried blood spots (DBS) and dried plasma spots (DPS) stored at 37 degrees C and high humidity. J Antimicrob Chemother. 2009;64(1):33-6. PubMed PMID: 19403653. Pubmed Central PMCID: 2692501. doi: 10.1093/jac/dkp150
-
(2009)
J Antimicrob Chemother
, vol.64
, Issue.1
, pp. 33-36
-
-
Garcia-Lerma, JG1
McNulty, A2
Jennings, C3
Huang, D4
Heneine, W5
Bremer, JW.6
-
46
-
-
77949716973
-
Stability of dried blood spots for HIV-1 drug resistance analysis
-
PubMed PMID: 20163343
-
Hearps AC, Ryan CE, Morris LM, Plate MM, Greengrass V, Crowe SM. Stability of dried blood spots for HIV-1 drug resistance analysis. Curr HIV Res. 2010;8(2):134-40. PubMed PMID: 20163343.
-
(2010)
Curr HIV Res
, vol.8
, Issue.2
, pp. 134-140
-
-
Hearps, AC1
Ryan, CE2
Morris, LM3
Plate, MM4
Greengrass, V5
Crowe, SM.6
-
47
-
-
77954755249
-
Effect of storage conditions of dried plasma and blood spots on HIV-1 RNA quantification and PCR amplification for drug resistance genotyping
-
PubMed PMID: 20542904
-
Monleau M, Butel C, Delaporte E, Boillot F, Peeters M. Effect of storage conditions of dried plasma and blood spots on HIV-1 RNA quantification and PCR amplification for drug resistance genotyping. J Antimicrob Chemother. 2010;65(8):1562-6. PubMed PMID: 20542904. doi: 10.1093/jac/dkq205
-
(2010)
J Antimicrob Chemother
, vol.65
, Issue.8
, pp. 1562-1566
-
-
Monleau, M1
Butel, C2
Delaporte, E3
Boillot, F4
Peeters, M.5
-
48
-
-
0029967721
-
HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time
-
PubMed PMID: 8599114
-
Perelson AS, Neumann AU, Markowitz M, Leonard JM, Ho DD. HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time. Science. 1996;271(5255):1582-6. PubMed PMID: 8599114.
-
(1996)
Science
, vol.271
, Issue.5255
, pp. 1582-1586
-
-
Perelson, AS1
Neumann, AU2
Markowitz, M3
Leonard, JM4
Ho, DD.5
|