-
1
-
-
0037059610
-
Phage genomics: small is beautiful
-
Brussow H, Hendrix RW. Phage genomics: small is beautiful. Cell. 2002;108:13-6.
-
(2002)
Cell
, vol.108
, pp. 13-16
-
-
Brussow, H.1
Hendrix, R.W.2
-
3
-
-
34250662138
-
The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
-
Grissa I, Vergnaud G, Pourcel C. The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. BMC Bioinformatics. 2007;8:172.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 172
-
-
Grissa, I.1
Vergnaud, G.2
Pourcel, C.3
-
4
-
-
79956157571
-
Evolution and classification of the CRISPR-Cas systems
-
Makarova KS, Haft DH, Barrangou R, Brouns SJ, Charpentier E, Horvath P, Moineau S, Mojica FJ, Wolf YI, Yakunin AF, et al. Evolution and classification of the CRISPR-Cas systems. Nat Rev Microbiol. 2011;9(6):467-77.
-
(2011)
Nat Rev Microbiol
, vol.9
, Issue.6
, pp. 467-477
-
-
Makarova, K.S.1
Haft, D.H.2
Barrangou, R.3
Brouns, S.J.4
Charpentier, E.5
Horvath, P.6
Moineau, S.7
Mojica, F.J.8
Wolf, Y.I.9
Yakunin, A.F.10
-
6
-
-
0036267740
-
Identification of genes that are associated with DNA repeats in prokaryotes
-
Jansen R, Embden JD, Gaastra W, Schouls LM. Identification of genes that are associated with DNA repeats in prokaryotes. Mol Microbiol. 2002;43(6):1565-75.
-
(2002)
Mol Microbiol
, vol.43
, Issue.6
, pp. 1565-1575
-
-
Jansen, R.1
Embden, J.D.2
Gaastra, W.3
Schouls, L.M.4
-
7
-
-
84859294085
-
Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus
-
Deng L, Kenchappa CS, Peng X, She Q, Garrett RA. Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus. Nucleic Acids Res. 2012;40(6):2470-80.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.6
, pp. 2470-2480
-
-
Deng, L.1
Kenchappa, C.S.2
Peng, X.3
She, Q.4
Garrett, R.A.5
-
8
-
-
84887929636
-
RNA-Seq analyses reveal CRISPR RNA processing and regulation patterns
-
Zoephel J, Randau L. RNA-Seq analyses reveal CRISPR RNA processing and regulation patterns. Biochem Soc Trans. 2013;41(6):1459-63.
-
(2013)
Biochem Soc Trans
, vol.41
, Issue.6
, pp. 1459-1463
-
-
Zoephel, J.1
Randau, L.2
-
9
-
-
84943160849
-
CRISPR-Cas immunity in prokaryotes
-
Marraffini LA. CRISPR-Cas immunity in prokaryotes. Nature. 2015;526(7571):55-61.
-
(2015)
Nature
, vol.526
, Issue.7571
, pp. 55-61
-
-
Marraffini, L.A.1
-
10
-
-
84902010986
-
Cas1-Cas2 complex formation mediates spacer acquisition during CRISPR-Cas adaptive immunity
-
Nunez JK, Kranzusch PJ, Noeske J, Wright AV, Davies CW, Doudna JA. Cas1-Cas2 complex formation mediates spacer acquisition during CRISPR-Cas adaptive immunity. Nat Struct Mol Biol. 2014;21(6):528-34.
-
(2014)
Nat Struct Mol Biol
, vol.21
, Issue.6
, pp. 528-534
-
-
Nunez, J.K.1
Kranzusch, P.J.2
Noeske, J.3
Wright, A.V.4
Davies, C.W.5
Doudna, J.A.6
-
11
-
-
80755187812
-
CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation
-
Bhaya D, Davison M, Barrangou R. CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation. Annu Rev Genet. 2011;45:273-97.
-
(2011)
Annu Rev Genet
, vol.45
, pp. 273-297
-
-
Bhaya, D.1
Davison, M.2
Barrangou, R.3
-
12
-
-
78149261827
-
The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA
-
Garneau JE, Dupuis ME, Villion M, Romero DA, Barrangou R, Boyaval P, Fremaux C, Horvath P, Magadan AH, Moineau S. The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA. Nature. 2010;468(7320):67-71.
-
(2010)
Nature
, vol.468
, Issue.7320
, pp. 67-71
-
-
Garneau, J.E.1
Dupuis, M.E.2
Villion, M.3
Romero, D.A.4
Barrangou, R.5
Boyaval, P.6
Fremaux, C.7
Horvath, P.8
Magadan, A.H.9
Moineau, S.10
-
13
-
-
84899134190
-
CRISPR-Cas systems: prokaryotes upgrade to adaptive immunity
-
Barrangou R, Marraffini LA. CRISPR-Cas systems: prokaryotes upgrade to adaptive immunity. Mol Cell. 2014;54(2):234-44.
-
(2014)
Mol Cell
, vol.54
, Issue.2
, pp. 234-244
-
-
Barrangou, R.1
Marraffini, L.A.2
-
14
-
-
84944449180
-
An updated evolutionary classification of CRISPR-Cas systems
-
Makarova KS, Wolf YI, Alkhnbashi OS, Costa F, Shah SA, Saunders SJ, Barrangou R, Brouns SJ, Charpentier E, Haft DH, et al. An updated evolutionary classification of CRISPR-Cas systems. Nat Rev Microbiol. 2015;13:722-36.
-
(2015)
Nat Rev Microbiol
, vol.13
, pp. 722-736
-
-
Makarova, K.S.1
Wolf, Y.I.2
Alkhnbashi, O.S.3
Costa, F.4
Shah, S.A.5
Saunders, S.J.6
Barrangou, R.7
Brouns, S.J.8
Charpentier, E.9
Haft, D.H.10
-
15
-
-
84896731736
-
CRISPR-based technologies: prokaryotic defense weapons repurposed
-
Terns RM, Terns MP. CRISPR-based technologies: prokaryotic defense weapons repurposed. Trends Genet. 2014;30(3):111-8.
-
(2014)
Trends Genet
, vol.30
, Issue.3
, pp. 111-118
-
-
Terns, R.M.1
Terns, M.P.2
-
16
-
-
49649114086
-
Small CRISPR RNAs guide antiviral defense in prokaryotes
-
Brouns SJ, Jore MM, Lundgren M, Westra ER, Slijkhuis RJ, Snijders AP, Dickman MJ, Makarova KS, Koonin EV, van der Oost J. Small CRISPR RNAs guide antiviral defense in prokaryotes. Science. 2008;321(5891):960-4.
-
(2008)
Science
, vol.321
, Issue.5891
, pp. 960-964
-
-
Brouns, S.J.1
Jore, M.M.2
Lundgren, M.3
Westra, E.R.4
Slijkhuis, R.J.5
Snijders, A.P.6
Dickman, M.J.7
Makarova, K.S.8
Koonin, E.V.9
Oost, J.10
-
17
-
-
84866859751
-
Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria
-
Gasiunasa G, Barrangoub R, Horvathc P, Siksnys V. Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria. Proc Natl Acad Sci. 2012;109:39.
-
(2012)
Proc Natl Acad Sci
, vol.109
, pp. 39
-
-
Gasiunasa, G.1
Barrangoub, R.2
Horvathc, P.3
Siksnys, V.4
-
18
-
-
84912096635
-
Programmable RNA shredding by the type III-A CRISPR-Cas system of Streptococcus thermophilus
-
Tamulaitis G, Kazlauskiene M, Manakova E, Venclovas C, Nwokeoji AO, Dickman MJ, Horvath P, Siksnys V. Programmable RNA shredding by the type III-A CRISPR-Cas system of Streptococcus thermophilus. Mol Cell. 2014;56(4):506-17.
-
(2014)
Mol Cell
, vol.56
, Issue.4
, pp. 506-517
-
-
Tamulaitis, G.1
Kazlauskiene, M.2
Manakova, E.3
Venclovas, C.4
Nwokeoji, A.O.5
Dickman, M.J.6
Horvath, P.7
Siksnys, V.8
-
19
-
-
84975678715
-
Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system
-
Zetsche B, Gootenberg JS, Abudayyeh OO, Slaymaker IM, Makarova KS, Essletzbichler P, Volz SE, Joung J, van der Oost J, Regev A, et al. Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system. Cell. 2015;163(3):759-71.
-
(2015)
Cell
, vol.163
, Issue.3
, pp. 759-771
-
-
Zetsche, B.1
Gootenberg, J.S.2
Abudayyeh, O.O.3
Slaymaker, I.M.4
Makarova, K.S.5
Essletzbichler, P.6
Volz, S.E.7
Joung, J.8
Oost, J.9
Regev, A.10
-
20
-
-
34248400310
-
A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
-
Haft DH, Selengut J, Mongodin EF, Nelson KE. A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput Biol. 2005;1(6):e60.
-
(2005)
PLoS Comput Biol
, vol.1
, Issue.6
-
-
Haft, D.H.1
Selengut, J.2
Mongodin, E.F.3
Nelson, K.E.4
-
21
-
-
33847371621
-
Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets
-
Mandin P, Repoila F, Vergassola M, Geissmann T, Cossart P. Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets. Nucleic Acids Res. 2007;35(3):962-74.
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.3
, pp. 962-974
-
-
Mandin, P.1
Repoila, F.2
Vergassola, M.3
Geissmann, T.4
Cossart, P.5
-
22
-
-
84868372186
-
An evolutionary link between natural transformation and CRISPR adaptive immunity
-
Jorth P, Whiteley M. An evolutionary link between natural transformation and CRISPR adaptive immunity. MBio. 2012;3:5.
-
(2012)
MBio
, vol.3
, pp. 5
-
-
Jorth, P.1
Whiteley, M.2
-
23
-
-
84946962335
-
Comparative analysis of the orphan CRISPR2 locus in 242 Enterococcus faecalis Strains
-
Hullahalli K, Rodrigues M, Schmidt BD, Li X, Bhardwaj P, Palmer KL. Comparative analysis of the orphan CRISPR2 locus in 242 Enterococcus faecalis Strains. PLoS One. 2015;10(9):e0138890.
-
(2015)
PLoS One
, vol.10
, Issue.9
-
-
Hullahalli, K.1
Rodrigues, M.2
Schmidt, B.D.3
Li, X.4
Bhardwaj, P.5
Palmer, K.L.6
-
24
-
-
77955085897
-
Self-targeting by CRISPR: gene regulation or autoimmunity
-
Stern A, Keren L, Wurtzel O, Amitai G, Sorek R. Self-targeting by CRISPR: gene regulation or autoimmunity Trends Genet. 2010;26(8):335-40.
-
(2010)
Trends Genet
, vol.26
, Issue.8
, pp. 335-340
-
-
Stern, A.1
Keren, L.2
Wurtzel, O.3
Amitai, G.4
Sorek, R.5
-
25
-
-
84879011562
-
Essential requirements for the detection and degradation of invaders by the Haloferax volcanii CRISPR/Cas system I-B
-
Maier LK, Lange SJ, Stoll B, Haas KA, Fischer S, Fischer E, Duchardt-Ferner E, Wohnert J, Backofen R, Marchfelder A. Essential requirements for the detection and degradation of invaders by the Haloferax volcanii CRISPR/Cas system I-B. RNA Biol. 2013;10(5):865-74.
-
(2013)
RNA Biol
, vol.10
, Issue.5
, pp. 865-874
-
-
Maier, L.K.1
Lange, S.J.2
Stoll, B.3
Haas, K.A.4
Fischer, S.5
Fischer, E.6
Duchardt-Ferner, E.7
Wohnert, J.8
Backofen, R.9
Marchfelder, A.10
-
26
-
-
34547579396
-
CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats
-
Web Server issue
-
Grissa I, Vergnaud G, Pourcel C. CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res. 2007;35(Web Server issue):W52-7.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 52-57
-
-
Grissa, I.1
Vergnaud, G.2
Pourcel, C.3
-
27
-
-
0034097451
-
Identification of a new repetitive element in Staphylococcus aureus
-
Cramton SE, Schnell NF, Gotz F, Bruckner R. Identification of a new repetitive element in Staphylococcus aureus. Infect Immun. 2000;68(4):2344-8.
-
(2000)
Infect Immun
, vol.68
, Issue.4
, pp. 2344-2348
-
-
Cramton, S.E.1
Schnell, N.F.2
Gotz, F.3
Bruckner, R.4
-
28
-
-
84866647398
-
Variation in the genomic locations and sequence conservation of STAR elements among staphylococcal species provides insight into DNA repeat evolution
-
Purves J, Blades M, Arafat Y, Malik SA, Bayliss CD, Morrissey JA. Variation in the genomic locations and sequence conservation of STAR elements among staphylococcal species provides insight into DNA repeat evolution. BMC Genomics. 2012;13:515.
-
(2012)
BMC Genomics
, vol.13
, pp. 515
-
-
Purves, J.1
Blades, M.2
Arafat, Y.3
Malik, S.A.4
Bayliss, C.D.5
Morrissey, J.A.6
-
29
-
-
84903701767
-
Accurate computational prediction of the transcribed strand of CRISPR non-coding RNAs
-
Biswas A, Fineran PC, Brown CM. Accurate computational prediction of the transcribed strand of CRISPR non-coding RNAs. Bioinformatics. 2014;30:1805-13.
-
(2014)
Bioinformatics
, vol.30
, pp. 1805-1813
-
-
Biswas, A.1
Fineran, P.C.2
Brown, C.M.3
-
30
-
-
84977517193
-
CRISPRDetect: a flexible algorithm to define CRISPR arrays
-
Biswas A, Staals RHJ, Morales SE, Fineran PC, Brown CM. CRISPRDetect: a flexible algorithm to define CRISPR arrays. BMC Genomics. 2016;17:356.
-
(2016)
BMC Genomics
, vol.17
, pp. 356
-
-
Biswas, A.1
Staals, R.H.J.2
Morales, S.E.3
Fineran, P.C.4
Brown, C.M.5
-
31
-
-
84884965371
-
CRISPRmap: an automated classification of repeat conservation in prokaryotic adaptive immune systems
-
Lange SJ, Alkhnbashi OS, Rose D, Will S, Backofen R. CRISPRmap: an automated classification of repeat conservation in prokaryotic adaptive immune systems. Nucleic Acids Res. 2013;41:8034-44.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 8034-8044
-
-
Lange, S.J.1
Alkhnbashi, O.S.2
Rose, D.3
Will, S.4
Backofen, R.5
-
32
-
-
84885082551
-
RNA-Seq reveals differential gene expression in Staphylococcus aureus with single-nucleotide resolution
-
Osmundson J, Dewell S, Darst SA. RNA-Seq reveals differential gene expression in Staphylococcus aureus with single-nucleotide resolution. PLoS One. 2013;8(10):e76572.
-
(2013)
PLoS One
, vol.8
, Issue.10
-
-
Osmundson, J.1
Dewell, S.2
Darst, S.A.3
-
33
-
-
84864042533
-
Diverse CRISPRs evolving in human microbiomes
-
Rho M, Wu Y, Tang H, Doak T, Ye Y. Diverse CRISPRs evolving in human microbiomes. PLoS Genet. 2012;8(6):e1002441.
-
(2012)
PLoS Genet
, vol.8
, Issue.6
-
-
Rho, M.1
Wu, Y.2
Tang, H.3
Doak, T.4
Ye, Y.5
-
34
-
-
34447644810
-
CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats
-
Bland C, Ramsey TL, Sabree F, Lowe M, Brown K, Kyrpides NC, Hugenholtz P. CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats. BMC Bioinformatics. 2007;8:209.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 209
-
-
Bland, C.1
Ramsey, T.L.2
Sabree, F.3
Lowe, M.4
Brown, K.5
Kyrpides, N.C.6
Hugenholtz, P.7
-
35
-
-
33745634395
-
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
-
Li W, Godzik A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006;22(13):1658-9.
-
(2006)
Bioinformatics
, vol.22
, Issue.13
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
36
-
-
79959931985
-
HMMER web server: interactive sequence similarity searching
-
Web Server issue
-
Finn RD, Clements J, Eddy SR. HMMER web server: interactive sequence similarity searching. Nucleic Acids Res. 2011;39(Web Server issue):W29-37.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 29-37
-
-
Finn, R.D.1
Clements, J.2
Eddy, S.R.3
-
37
-
-
84895793652
-
Expanding the catalog of cas genes with metagenomes
-
Zhang Q, Doak TG, Ye Y. Expanding the catalog of cas genes with metagenomes. Nucleic Acids Res. 2014;42(4):2448-9.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.4
, pp. 2448-2449
-
-
Zhang, Q.1
Doak, T.G.2
Ye, Y.3
-
38
-
-
78651326786
-
FragGeneScan: predicting genes in short and error-prone reads
-
Rho M, Tang H, Ye Y. FragGeneScan: predicting genes in short and error-prone reads. Nucleic Acids Res. 2010;38(20):e191.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.20
-
-
Rho, M.1
Tang, H.2
Ye, Y.3
-
39
-
-
38949214103
-
Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus
-
Horvath P, Romero DA, Coute-Monvoisin AC, Richards M, Deveau H, Moineau S, Boyaval P, Fremaux C, Barrangou R. Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus. J Bacteriol. 2008;190(4):1401-12.
-
(2008)
J Bacteriol
, vol.190
, Issue.4
, pp. 1401-1412
-
-
Horvath, P.1
Romero, D.A.2
Coute-Monvoisin, A.C.3
Richards, M.4
Deveau, H.5
Moineau, S.6
Boyaval, P.7
Fremaux, C.8
Barrangou, R.9
-
40
-
-
33745634395
-
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
-
Li W, Godzik A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006;22:2.
-
(2006)
Bioinformatics
, vol.22
, pp. 2
-
-
Li, W.1
Godzik, A.2
-
41
-
-
33847280283
-
Prediction of effective genome size in metagenomic samples
-
Raes J, Korbel JO, Lercher MJ, von Mering C, Bork P. Prediction of effective genome size in metagenomic samples. Genome Biol. 2007;8(1):R10.
-
(2007)
Genome Biol
, vol.8
, Issue.1
-
-
Raes, J.1
Korbel, J.O.2
Lercher, M.J.3
Mering, C.4
Bork, P.5
-
42
-
-
13244255415
-
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
-
Edgar RC. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics. 2004;5:113.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
43
-
-
67649327176
-
FastTree: computing large minimum evolution trees with profiles instead of a distance matrix
-
Price MN, Dehal PS, Arkin AP. FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol Biol Evol. 2009;26(7):1641-50.
-
(2009)
Mol Biol Evol
, vol.26
, Issue.7
, pp. 1641-1650
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
44
-
-
84879005867
-
Evidence for the widespread distribution of CRISPR-Cas system in the Phylum Cyanobacteria
-
Cai F, Axen SD, Kerfeld CA. Evidence for the widespread distribution of CRISPR-Cas system in the Phylum Cyanobacteria. RNA Biol. 2013;10(5):687-93.
-
(2013)
RNA Biol
, vol.10
, Issue.5
, pp. 687-693
-
-
Cai, F.1
Axen, S.D.2
Kerfeld, C.A.3
-
45
-
-
78651083184
-
A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair
-
Babu M, Beloglazova N, Flick R, Graham C, Skarina T, Nocek B, Gagarinova A, Pogoutse O, Brown G, Binkowski A, et al. A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair. Mol Microbiol. 2011;79(2):484-502.
-
(2011)
Mol Microbiol
, vol.79
, Issue.2
, pp. 484-502
-
-
Babu, M.1
Beloglazova, N.2
Flick, R.3
Graham, C.4
Skarina, T.5
Nocek, B.6
Gagarinova, A.7
Pogoutse, O.8
Brown, G.9
Binkowski, A.10
-
46
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
Barrangou R, Fremaux C, Deveau H, Richards M, Boyaval P, Moineau S, Romero DA, Horvath P. CRISPR provides acquired resistance against viruses in prokaryotes. Science. 2007;315:1709-12.
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
Richards, M.4
Boyaval, P.5
Moineau, S.6
Romero, D.A.7
Horvath, P.8
-
47
-
-
38949123143
-
Phage response to CRISPR-encoded resistance in Streptococcus thermophilus
-
Deveau H, Barrangou R, Garneau JE, Labonte J, Fremaux C, Boyaval P, Romero DA, Horvath P, Moineau S. Phage response to CRISPR-encoded resistance in Streptococcus thermophilus. J Bacteriol. 2008;190(4):1390-400.
-
(2008)
J Bacteriol
, vol.190
, Issue.4
, pp. 1390-1400
-
-
Deveau, H.1
Barrangou, R.2
Garneau, J.E.3
Labonte, J.4
Fremaux, C.5
Boyaval, P.6
Romero, D.A.7
Horvath, P.8
Moineau, S.9
-
48
-
-
0033555906
-
Tandem repeats finder: a program to analyze DNA sequences
-
Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999;27:573-80.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 573-580
-
-
Benson, G.1
-
49
-
-
84891633577
-
The role of variable DNA tandem repeats in bacterial adaptation
-
Zhou K, Aertsen A, Michiels CW. The role of variable DNA tandem repeats in bacterial adaptation. FEMS Microbiol Rev. 2014;38(1):119-41.
-
(2014)
FEMS Microbiol Rev
, vol.38
, Issue.1
, pp. 119-141
-
-
Zhou, K.1
Aertsen, A.2
Michiels, C.W.3
-
50
-
-
33847208871
-
Timescales of genetic and epigenetic inheritance
-
Rando OJ, Verstrepen KJ. Timescales of genetic and epigenetic inheritance. Cell. 2007;128(4):655-68.
-
(2007)
Cell
, vol.128
, Issue.4
, pp. 655-668
-
-
Rando, O.J.1
Verstrepen, K.J.2
-
51
-
-
84855753946
-
A very early-branching Staphylococcus aureus lineage lacking the carotenoid pigment staphyloxanthin
-
Holt DC, Holden MT, Tong SY, Castillo-Ramirez S, Clarke L, Quail MA, Currie BJ, Parkhill J, Bentley SD, Feil EJ, et al. A very early-branching Staphylococcus aureus lineage lacking the carotenoid pigment staphyloxanthin. Genome Biol Evol. 2011;3:881-95.
-
(2011)
Genome Biol Evol
, vol.3
, pp. 881-895
-
-
Holt, D.C.1
Holden, M.T.2
Tong, S.Y.3
Castillo-Ramirez, S.4
Clarke, L.5
Quail, M.A.6
Currie, B.J.7
Parkhill, J.8
Bentley, S.D.9
Feil, E.J.10
-
52
-
-
84984869357
-
NCBI prokaryotic genome annotation pipeline
-
Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP, Zaslavsky L, Lomsadze A, Pruitt K, Borodovsky M, Ostell J. NCBI prokaryotic genome annotation pipeline. Nucleic Acids Res. 2016;44(14):6614-24.
-
(2016)
Nucleic Acids Res
, vol.44
, Issue.14
, pp. 6614-6624
-
-
Tatusova, T.1
DiCuccio, M.2
Badretdin, A.3
Chetvernin, V.4
Nawrocki, E.P.5
Zaslavsky, L.6
Lomsadze, A.7
Pruitt, K.8
Borodovsky, M.9
Ostell, J.10
-
53
-
-
33846975418
-
PILER-CR: fast and accurate identification of CRISPR repeats
-
Edgar RC. PILER-CR: fast and accurate identification of CRISPR repeats. BMC Bioinformatics. 2007;8:18.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 18
-
-
Edgar, R.C.1
-
54
-
-
84868092923
-
Genome Reduction and co-evolution between the primary and secondary bacterial symbionts of psyllids
-
Sloan DB, Moran NA. Genome Reduction and co-evolution between the primary and secondary bacterial symbionts of psyllids. Mol Biol Evol. 2012;29(12):3781-92.
-
(2012)
Mol Biol Evol
, vol.29
, Issue.12
, pp. 3781-3792
-
-
Sloan, D.B.1
Moran, N.A.2
-
55
-
-
65449136284
-
TopHat: discovering splice junctions with RNA-Seq
-
Trapnell C, Pachter L, Salzberg S. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics. 2009;25:1105-11.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.3
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