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Volumn 3, Issue 1, 2011, Pages 881-895

A very early-branching staphylococcus aureus lineage lacking the carotenoid pigment staphyloxanthin

Author keywords

Bacterial species; CRISPR; Positive selection; Staphyloxanthin

Indexed keywords

BACTERIA (MICROORGANISMS); STAPHYLOCOCCUS AUREUS;

EID: 84855753946     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evr078     Document Type: Article
Times cited : (140)

References (83)
  • 1
    • 43849089834 scopus 로고    scopus 로고
    • Microbial diversity and the genetic nature of microbial species
    • DOI 10.1038/nrmicro1872, PII NRMICRO1872
    • Achtman M, Wagner M. 2008. Microbial diversity and the genetic nature of microbial species. Nat Rev Microbiol. 6:431-440. (Pubitemid 351696437)
    • (2008) Nature Reviews Microbiology , vol.6 , Issue.6 , pp. 431-440
    • Achtman, M.1    Wagner, M.2
  • 2
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul SF, et al. 1990. Basic local alignment search tool. J Mol Biol. 215:403-410.
    • (1990) J Mol Biol. , vol.215 , pp. 403-410
    • Altschul, S.F.1
  • 4
    • 37549035397 scopus 로고    scopus 로고
    • Genome sequence of Staphylococcus aureus strain Newman and comparative analysis of staphylococcal genomes: Polymorphism and evolution of two major pathogenicity islands
    • Baba T, et al. 2008. Genome sequence of Staphylococcus aureus strain Newman and comparative analysis of staphylococcal genomes: polymorphism and evolution of two major pathogenicity islands. J Bacteriol. 190:300-310.
    • (2008) J Bacteriol. , vol.190 , pp. 300-310
    • Baba, T.1
  • 7
    • 77957853671 scopus 로고    scopus 로고
    • Complete genome sequence of Staphylococcus aureus strain JKD6159, a unique Australian clone of ST93-IV community methicillin-resistant Staphylococcus aureus
    • Chua K, et al. 2010. Complete genome sequence of Staphylococcus aureus strain JKD6159, a unique Australian clone of ST93-IV community methicillin-resistant Staphylococcus aureus. J Bacteriol. 192:5556-5557.
    • (2010) J Bacteriol. , vol.192 , pp. 5556-5557
    • Chua, K.1
  • 8
    • 33746601080 scopus 로고    scopus 로고
    • Staphyloxanthin plays a role in the fitness of Staphylococcus aureus and its ability to cope with oxidative stress
    • DOI 10.1128/IAI.00204-06
    • Clauditz A, et al. 2006. Staphyloxanthin plays a role in the fitness of Staphylococcus aureus and its ability to cope with oxidative stress. Infect Immun. 74:4950-4953. (Pubitemid 44157287)
    • (2006) Infection and Immunity , vol.74 , Issue.8 , pp. 4950-4953
    • Clauditz, A.1    Resch, A.2    Wieland, K.-P.3    Peschel, A.4    Gotz, F.5
  • 9
    • 33646786106 scopus 로고    scopus 로고
    • The phylogeny of Staphylococcus aureus-which genes make the best intra-species markers?
    • Cooper JE, Feil EJ. 2006. The phylogeny of Staphylococcus aureus-which genes make the best intra-species markers? Microbiology. 152:1297-1305.
    • (2006) Microbiology , vol.152 , pp. 1297-1305
    • Cooper, J.E.1    Feil, E.J.2
  • 10
    • 77956193448 scopus 로고    scopus 로고
    • ProgressiveMauve: Multiple genome alignment with gene gain, loss and rearrangement
    • Darling AE, Mau B, Perna NT. 2010. progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PloS One. 5:e11147.
    • (2010) PloS One. , vol.5
    • Darling, A.E.1    Mau, B.2    Perna, N.T.3
  • 11
    • 0033485517 scopus 로고    scopus 로고
    • Improved microbial gene identification with GLIMMER
    • Delcher AL, et al. 1999. Improved microbial gene identification with GLIMMER. Nucl Acids Res. 27:4636-4641.
    • (1999) Nucl Acids Res. , vol.27 , pp. 4636-4641
    • Delcher, A.L.1
  • 13
    • 0036206021 scopus 로고    scopus 로고
    • RpoB gene sequence-based identification of Staphylococcus species
    • DOI 10.1128/JCM.40.4.1333-1338.2002
    • Drancourt M, Raoult D. 2002. rpoB gene sequence-based identification of Staphylococcus species. J Clin Microbiol. 40:1333-1338. (Pubitemid 34279897)
    • (2002) Journal of Clinical Microbiology , vol.40 , Issue.4 , pp. 1333-1338
    • Drancourt, M.1    Raoult, D.2
  • 14
    • 0025788069 scopus 로고
    • Recombination in Escherichia coli and the definition of biological species
    • Dykhuizen DE, Green L. 1991. Recombination in Escherichia coli and the definition of biological species. J Bacteriol. 173:7257-7268.
    • (1991) J Bacteriol. , vol.173 , pp. 7257-7268
    • Dykhuizen, D.E.1    Green, L.2
  • 15
    • 0034005677 scopus 로고    scopus 로고
    • Multilocus sequence typing for characterization of methicillin-resistant and methicillin-susceptible clones of Staphylococcus aureus
    • Enright MC, et al. 2000. Multilocus sequence typing for characterization of methicillin-resistant and methicillin-susceptible clones of Staph-ylococcus aureus. J Clin Microbiol. 38:1008-1015. (Pubitemid 30140551)
    • (2000) Journal of Clinical Microbiology , vol.38 , Issue.3 , pp. 1008-1015
    • Enright, M.C.1    Day, N.P.J.2    Davies, C.E.3    Peacock, S.J.4    Spratt, B.G.5
  • 19
    • 0000122573 scopus 로고
    • PHYLIP-phylogeny inference package (version 3.2)
    • Felsenstein J. 1989. PHYLIP-phylogeny inference package (version 3.2). Cladistics 5:164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 20
    • 33846625056 scopus 로고    scopus 로고
    • Recombination and the nature of bacterial speciation
    • DOI 10.1126/science.1127573
    • Fraser C, Hanage WP, Spratt BG. 2007. Recombination and the nature of bacterial speciation. Science 315:476-480. (Pubitemid 46175745)
    • (2007) Science , vol.315 , Issue.5811 , pp. 476-480
    • Fraser, C.1    Hanage, W.P.2    Spratt, B.G.3
  • 21
    • 0032526322 scopus 로고    scopus 로고
    • Combining diverse evidence for gene recognition in completely sequenced bacterial genomes
    • DOI 10.1093/nar/26.12.2941
    • Frishman D, Mironov A, Mewes HW, Gelfand M. 1998. Combining diverse evidence for gene recognition in completely sequenced bacterial genomes. Nucl Acids Res. 26:2941-2947. (Pubitemid 28297528)
    • (1998) Nucleic Acids Research , vol.26 , Issue.12 , pp. 2941-2947
    • Frishman, D.1    Mironov, A.2    Mewes, H.-W.3    Gelfand, M.4
  • 22
    • 23944437942 scopus 로고    scopus 로고
    • Opinion: Re-evaluating prokaryotic species
    • Gevers D, et al. 2005. Opinion: re-evaluating prokaryotic species. Nat Rev Microbiol. 3:733-739.
    • (2005) Nat Rev Microbiol. , vol.3 , pp. 733-739
    • Gevers, D.1
  • 23
    • 40749108545 scopus 로고    scopus 로고
    • Genetic classification and distinguishing of Staphylococcus species based on different partial gap, 16S rRNA, hsp60, rpoB, sodA, and tuf gene sequences
    • DOI 10.1128/JCM.02058-07
    • Ghebremedhin B, Layer F, Konig W, Konig B. 2008. Genetic classification and distinguishing of Staphylococcus species based on different partial gap, 16S rRNA, hsp60, rpoB, sodA, and tuf gene sequences. J Clin Microbiol. 46:1019-1025. (Pubitemid 351379996)
    • (2008) Journal of Clinical Microbiology , vol.46 , Issue.3 , pp. 1019-1025
    • Ghebremedhin, B.1    Layer, F.2    Konig, W.3    Konig, B.4
  • 25
    • 33745150284 scopus 로고    scopus 로고
    • The Staphylococcus aureus NCTC8325 genome
    • Fischetti V, et al editors Washington (DC): ASM Press
    • Gillaspy AF, et al. 2006. The Staphylococcus aureus NCTC8325 genome. In: Fischetti V, et al editors Gram positive pathogens. Washington (DC): ASM Press. p 381-412.
    • (2006) Gram Positive Pathogens , pp. 381-412
    • Gillaspy, A.F.1
  • 26
    • 77950634977 scopus 로고    scopus 로고
    • Livestock-associated methicillin-resistant Staphylococcus aureus sequence type 398 in humans, Canada
    • Golding GR, et al. 2010. Livestock-associated methicillin-resistant Staphylococcus aureus sequence type 398 in humans, Canada. Emerg Infect Dis. 16:587-594.
    • (2010) Emerg Infect Dis. , vol.16 , pp. 587-594
    • Golding, G.R.1
  • 28
    • 34248400310 scopus 로고    scopus 로고
    • A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
    • Haft DH, Selengut J, Mongodin EF, Nelson KE. 2005. A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput Biol. 1:e60.
    • (2005) PLoS Comput Biol. , vol.1
    • Haft, D.H.1    Selengut, J.2    Mongodin, E.F.3    Nelson, K.E.4
  • 30
    • 38049166611 scopus 로고    scopus 로고
    • Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus
    • Highlander SK, et al. 2007. Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus. BMC Microbiol. 7:99.
    • (2007) BMC Microbiol. , vol.7 , pp. 99
    • Highlander, S.K.1
  • 32
    • 75149126472 scopus 로고    scopus 로고
    • Genome sequence of a recently emerged, highly transmissible, multi-antibiotic- and antiseptic-resistant variant of methicillin-resistant Staphylococcus aureus, sequence type 239 (TW)
    • Holden MT, et al. 2010. Genome sequence of a recently emerged, highly transmissible, multi-antibiotic- and antiseptic-resistant variant of methicillin-resistant Staphylococcus aureus, sequence type 239 (TW). J Bacteriol. 192:888-892.
    • (2010) J Bacteriol. , vol.192 , pp. 888-892
    • Holden, M.T.1
  • 33
    • 74249095519 scopus 로고    scopus 로고
    • CRISPR/Cas, the immune system of bacteria and archaea
    • Horvath P, Barrangou R. 2010. CRISPR/Cas, the immune system of bacteria and archaea. Science 327:167-170.
    • (2010) Science , vol.327 , pp. 167-170
    • Horvath, P.1    Barrangou, R.2
  • 34
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • DOI 10.1093/molbev/msj030
    • Huson DH, Bryant D. 2006. Application of phylogenetic networks in evolutionary studies. Mol Biol Evol. 23:254-267. (Pubitemid 43100040)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.2 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 35
    • 3042584978 scopus 로고    scopus 로고
    • Novel type V staphylococcal cassette chromosome mec driven by a novel cassette chromosome recombinase, ccrC
    • DOI 10.1128/AAC.48.7.2637-2651.2004
    • Ito T, et al. 2004. Novel type V staphylococcal cassette chromosome mec driven by a novel cassette chromosome recombinase, ccrC. Antimicrob Agents Chemother. 48:2637-2651. (Pubitemid 38823437)
    • (2004) Antimicrobial Agents and Chemotherapy , vol.48 , Issue.7 , pp. 2637-2651
    • Ito, T.1    Ma, X.X.2    Takeuchi, F.3    Okuma, K.4    Yuzawa, H.5    Hiramatsu, K.6
  • 36
    • 47249160802 scopus 로고    scopus 로고
    • Recurrence of heterogeneous methicillin-resistant Staphylococcus aureus (MRSA) among the MRSA clinical isolates in a Japanese university hospital
    • DOI 10.1093/jac/dkn186
    • Kishii K, et al. 2008. Recurrence of heterogeneous methicillin-resistant Staphylococcus aureus (MRSA) among the MRSA clinical isolates in a Japanese university hospital. J Antimicrob Chemother. 62: 324-328. (Pubitemid 351984775)
    • (2008) Journal of Antimicrobial Chemotherapy , vol.62 , Issue.2 , pp. 324-328
    • Kishii, K.1    Ito, T.2    Watanabe, S.3    Okuzumi, K.4    Hiramatsu, K.5
  • 37
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • DOI 10.1006/jmbi.2000.4315
    • Krogh A, Larsson B, von Heijne G, Sonnhammer EL. 2001. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol. 305:567-580. (Pubitemid 33032862)
    • (2001) Journal of Molecular Biology , vol.305 , Issue.3 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    Von Heijne, G.3    Sonnhammer, E.L.L.4
  • 40
    • 0642307369 scopus 로고    scopus 로고
    • EasyGene - A prokaryotic gene finder that ranks ORFs by statistical significance
    • Larsen TS, Krogh A. 2003. EasyGene-a prokaryotic gene finder that ranks ORFs by statistical significance. BMC Bioinformatics. 4:21.
    • (2003) BMC Bioinformatics. , vol.4 , pp. 21
    • Larsen, T.S.1    Krogh, A.2
  • 41
    • 33745081753 scopus 로고    scopus 로고
    • Understanding the rise of the superbug: Investigation of the evolution and genomic variation of Staphylococcus aureus
    • DOI 10.1007/s10142-005-0019-7
    • Lindsay JA, Holden MT. 2006. Understanding the rise of the superbug: investigation of the evolution and genomic variation of Staphylo-coccus aureus. Funct Integr Genomics. 6:186-201. (Pubitemid 43885068)
    • (2006) Functional and Integrative Genomics , vol.6 , Issue.3 , pp. 186-201
    • Lindsay, J.A.1    Holden, M.T.G.2
  • 42
    • 40449088993 scopus 로고    scopus 로고
    • A cholesterol biosynthesis inhibitor blocks Staphylococcus aureus virulence
    • Liu CI, et al. 2008. A cholesterol biosynthesis inhibitor blocks Staphylococcus aureus virulence. Science 319:1391-1394.
    • (2008) Science , vol.319 , pp. 1391-1394
    • Liu, C.I.1
  • 44
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • DOI 10.1093/nar/25.5.955
    • Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucl Acids Res. 25:955-964. (Pubitemid 27298263)
    • (1997) Nucleic Acids Research , vol.25 , Issue.5 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 45
    • 70849123800 scopus 로고    scopus 로고
    • Prokaryotic homologs of Argonaute proteins are predicted to function as key components of a novel system of defense against mobile genetic elements
    • doi:1745-6150-4-29 [pii]10.1186/1745-6150
    • Makarova KS, Wolf YI, van der Oost J, Koonin EV. 2009. Prokaryotic homologs of Argonaute proteins are predicted to function as key components of a novel system of defense against mobile genetic elements. Biol Direct. 4:29. doi:1745-6150-4-29 [pii]10.1186/1745-6150-4-29
    • (2009) Biol Direct. , vol.4 , Issue.29 , pp. 4-29
    • Makarova, K.S.1    Wolf, Y.I.2    Van Der Oost, J.3    Koonin, E.V.4
  • 46
    • 57849137502 scopus 로고    scopus 로고
    • CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA
    • Marraffini LA, Sontheimer EJ. 2008. CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA. Science 322:1843-1845.
    • (2008) Science , vol.322 , pp. 1843-1845
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 47
    • 0019824839 scopus 로고
    • Pigments of Staphylococcus aureus, a series of triterpenoid carotenoids
    • Marshall JH, Wilmoth GJ. 1981. Pigments of Staphylococcus aureus, a series of triterpenoid carotenoids. J Bacteriol. 147:900-913. (Pubitemid 12226314)
    • (1981) Journal of Bacteriology , vol.147 , Issue.3 , pp. 900-913
    • Marshall, J.H.1    Wilmoth, G.J.2
  • 48
    • 0033824415 scopus 로고    scopus 로고
    • RDP: Detection of recombination amongst aligned sequences
    • Martin D, Rybicki E. 2000. RDP: detection of recombination amongst aligned sequences. Bioinformatics 16:562-563.
    • (2000) Bioinformatics , vol.16 , pp. 562-563
    • Martin, D.1    Rybicki, E.2
  • 50
    • 78649518770 scopus 로고    scopus 로고
    • Characterisation of Australian MRSA strains ST75- and ST883-MRSA-IV and analysis of their accessory gene regulator locus
    • doi:10.1371/journal.-pone.0014025
    • Monecke S, et al. 2010. Characterisation of Australian MRSA strains ST75- and ST883-MRSA-IV and analysis of their accessory gene regulator locus. PLoS One. 5:e14025. doi:10.1371/journal.-pone.0014025
    • (2010) PLoS One. , vol.5
    • Monecke, S.1
  • 51
    • 2142647833 scopus 로고    scopus 로고
    • Novel Non-mecA-Containing Staphylococcal Chromosomal Cassette Composite Island Containing pbp4 and tagF Genes in a Commensal Staphylococcal Species: A Possible Reservoir for Antibiotic Resistance Islands in Staphylococcus aureus
    • DOI 10.1128/AAC.48.5.1823-1836.2004
    • Mongkolrattanothai K, Boyle S, Murphy TV, Daum RS. 2004. Novel non-mecA-containing staphylococcal chromosomal cassette composite island containing pbp4 and tagF genes in a commensal staphylo-coccal species: a possible reservoir for antibiotic resistance islands in Staphylococcus aureus. Antimicrob Agents Chemother. 48: 1823-1836. (Pubitemid 38544395)
    • (2004) Antimicrobial Agents and Chemotherapy , vol.48 , Issue.5 , pp. 1823-1836
    • Mongkolrattanothai, K.1    Boyle, S.2    Murphy, T.V.3    Daum, R.S.4
  • 53
    • 37849023461 scopus 로고    scopus 로고
    • Mutated response regulator graR is responsible for phenotypic conversion of Staphylococcus aureus from heterogeneous vancomycin-intermediate resistance to vancomycin-inter-mediate resistance
    • Neoh HM, et al. 2008. Mutated response regulator graR is responsible for phenotypic conversion of Staphylococcus aureus from heterogeneous vancomycin-intermediate resistance to vancomycin-inter-mediate resistance. Antimicrob Agents Chemother. 52:45-53.
    • (2008) Antimicrob Agents Chemother. , vol.52 , pp. 45-53
    • Neoh, H.M.1
  • 54
    • 29444440428 scopus 로고    scopus 로고
    • Cranial morphology of early Americans from Lagoa Santa, Brazil: Implications for the settlement of the New World
    • DOI 10.1073/pnas.0507185102
    • Neves WA, Hubbe M. 2005. Cranial morphology of early Americans from Lagoa Santa, Brazil: implications for the settlement of the New World. Proc Natl Acad Sci USA. 102:18309-18314. (Pubitemid 43011222)
    • (2005) Proceedings of the National Academy of Sciences of the United States of America , vol.102 , Issue.51 , pp. 18309-18314
    • Neves, W.A.1    Hubbe, M.2
  • 55
    • 67650021213 scopus 로고    scopus 로고
    • Phylogenetically distinct Staphylococcus aureus lineage prevalent among indigenous communities in northern Australia
    • doi:JCM.00122-09 [pii]10.1128/JCM.00122-09
    • Ng JW, et al. 2009. Phylogenetically distinct Staphylococcus aureus lineage prevalent among indigenous communities in northern Australia. J Clin Microbiol. 47:2295-2300. doi:JCM.00122-09 [pii]10.1128/JCM.00122-09.
    • (2009) J Clin Microbiol. , vol.47 , pp. 2295-2300
    • Ng, J.W.1
  • 56
    • 0030614959 scopus 로고    scopus 로고
    • Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
    • Nielsen H, Engelbrecht J, Brunak S, von Heijne G. 1997. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng. 10:1-6.
    • (1997) Protein Eng. , vol.10 , pp. 1-6
    • Nielsen, H.1    Engelbrecht, J.2    Brunak, S.3    Von Heijne, G.4
  • 57
    • 33646258046 scopus 로고    scopus 로고
    • Methicillin-resistant Staphylococcus aureus in the Australian community: An evolving epidemic
    • Nimmo GR, et al. 2006. Methicillin-resistant Staphylococcus aureus in the Australian community: an evolving epidemic. Med J Aust. 184:384-388.
    • (2006) Med J Aust. , vol.184 , pp. 384-388
    • Nimmo, G.R.1
  • 58
    • 38949209569 scopus 로고    scopus 로고
    • Gene acquisition at the insertion site for SCCmec, the genomic island conferring methicillin resistance in Staphylococcus aureus
    • DOI 10.1128/JB.01128-07
    • Noto MJ, Kreiswirth BN, Monk AB, Archer GL. 2008. Gene acquisition at the insertion site for SCCmec, the genomic island conferring methicillin resistance in Staphylococcus aureus. J Bacteriol. 190:1276-1283. (Pubitemid 351215008)
    • (2008) Journal of Bacteriology , vol.190 , Issue.4 , pp. 1276-1283
    • Noto, M.J.1    Kreiswirth, B.N.2    Monk, A.B.3    Archer, G.L.4
  • 59
    • 72849109457 scopus 로고    scopus 로고
    • Role of rsbU and staphyloxanthin in phagocytosis and intracellular growth of Staphylococcus aureus in human macrophages and endothelial cells
    • doi:10.1086/606012
    • Olivier AC, et al. 2009. Role of rsbU and staphyloxanthin in phagocytosis and intracellular growth of Staphylococcus aureus in human macrophages and endothelial cells. J Infect Dis. 200:1367-1370. doi:10.1086/606012.
    • (2009) J Infect Dis. , vol.200 , pp. 1367-1370
    • Olivier, A.C.1
  • 60
    • 71049152453 scopus 로고    scopus 로고
    • Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer
    • Pearson T, et al. 2009. Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer. BMC Biol. 7:78.
    • (2009) BMC Biol. , vol.7 , pp. 78
    • Pearson, T.1
  • 61
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson WR, Lipman DJ. 1988. Improved tools for biological sequence comparison. Proc Natl Acad Sci USA. 85:2444-2448.
    • (1988) Proc Natl Acad Sci USA. , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 62
    • 0035209373 scopus 로고    scopus 로고
    • Rapid and accurate species-level identification of coagulase-negative staphylococci by using the sodA gene as a target
    • DOI 10.1128/JCM.39.12.4296-4301.2001
    • Poyart C, Quesne G, Boumaila C, Trieu-Cuot P. 2001. Rapid and Accurate species-level identification of coagulase-negative Staphy-lococci by using the sodA gene as a target. J Clin Microbiol. 39:4296-4301. (Pubitemid 33117113)
    • (2001) Journal of Clinical Microbiology , vol.39 , Issue.12 , pp. 4296-4301
    • Poyart, C.1    Quesne, G.2    Boumaila, C.3    Trieu-Cuot, P.4
  • 63
    • 73149098333 scopus 로고    scopus 로고
    • Shifting the genomic gold standard for the prokaryotic species definition
    • Richter M, Rossello-Mora R. 2009. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA. 106:19126-19131.
    • (2009) Proc Natl Acad Sci USA. , vol.106 , pp. 19126-19131
    • Richter, M.1    Rossello-Mora, R.2
  • 64
    • 59649094126 scopus 로고    scopus 로고
    • Genome analysis of the meat starter culture bacterium Staphylococcus carnosus TM300
    • Rosenstein R, et al. 2009. Genome analysis of the meat starter culture bacterium Staphylococcus carnosus TM300. Appl Environ Microbiol. 75:811-822.
    • (2009) Appl Environ Microbiol. , vol.75 , pp. 811-822
    • Rosenstein, R.1
  • 65
    • 69949090642 scopus 로고    scopus 로고
    • Comparisons between geographically diverse samples of carried Staphylococcus aureus
    • doi:JB.00493-09 [pii]10.1128/JB.00493-09
    • Ruimy R, et al. 2009. Comparisons between geographically diverse samples of carried Staphylococcus aureus. J Bacteriol. 191:5577-5583 doi:JB.00493-09 [pii]10.1128/JB.00493-09.
    • (2009) J Bacteriol. , vol.191 , pp. 5577-5583
    • Ruimy, R.1
  • 66
    • 77955950311 scopus 로고    scopus 로고
    • Are host genetics the predominant determinant of persistent nasal Staphylococcus aureus carriage in humans?
    • Ruimy R, et al. 2010. Are host genetics the predominant determinant of persistent nasal Staphylococcus aureus carriage in humans? J Infect Dis. 202:924-934.
    • (2010) J Infect Dis. , vol.202 , pp. 924-934
    • Ruimy, R.1
  • 67
    • 0033635022 scopus 로고    scopus 로고
    • Artemis: Sequence visualization and annotation
    • Rutherford K, et al. 2000. Artemis: sequence visualization and annotation. Bioinformatics 16:944-945.
    • (2000) Bioinformatics , vol.16 , pp. 944-945
    • Rutherford, K.1
  • 68
    • 77953354684 scopus 로고    scopus 로고
    • Whole genome analysis of a livestock-associated methicillin-resistant Staphylococcus aureus ST398 isolate from a case of human endocarditis
    • Schijffelen MJ, Boel CH, van Strijp JA, Fluit AC. 2010. Whole genome analysis of a livestock-associated methicillin-resistant Staphylococcus aureus ST398 isolate from a case of human endocarditis. BMC Genomics. 11:376.
    • (2010) BMC Genomics. , vol.11 , pp. 376
    • Schijffelen, M.J.1    Boel, C.H.2    Van Strijp, J.A.3    Fluit, A.C.4
  • 69
    • 70349095361 scopus 로고    scopus 로고
    • Integrative and sequence characteristics of a novel genetic element, ICE6013, in Staphylococcus aureus
    • Smyth DS, Robinson DA. 2009. Integrative and sequence characteristics of a novel genetic element, ICE6013, in Staphylococcus aureus. J Bacteriol. 191:5964-5975.
    • (2009) J Bacteriol. , vol.191 , pp. 5964-5975
    • Smyth, D.S.1    Robinson, D.A.2
  • 71
    • 65549090640 scopus 로고    scopus 로고
    • Community-associated strains of methicillin-resistant Staphylococcus aureus and methicillin-susceptible S. aureus in indigenous Northern Australia: Epidemiology and outcomes
    • Tong SY, et al. 2009. Community-associated strains of methicillin-resistant Staphylococcus aureus and methicillin-susceptible S. aureus in indigenous Northern Australia: epidemiology and outcomes. J Infect Dis. 199:1461-1470.
    • (2009) J Infect Dis. , vol.199 , pp. 1461-1470
    • Tong, S.Y.1
  • 72
    • 77954753232 scopus 로고    scopus 로고
    • Clinical correlates of Panton-Valentine leukocidin (PVL), PVL isoforms, and clonal complex in the Staphylococcus aureus population of Northern Australia
    • doi:10.1086/655396
    • Tong SY, et al. 2010. Clinical correlates of Panton-Valentine leukocidin (PVL), PVL isoforms, and clonal complex in the Staphylococcus aureus population of Northern Australia. J Infect Dis. 202:760-769 doi:10.1086/655396.
    • (2010) J Infect Dis. , vol.202 , pp. 760-769
    • Tong, S.Y.1
  • 73
    • 77956213914 scopus 로고    scopus 로고
    • The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella
    • Touchon M, Rocha EP. 2010. The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella. PloS One. 5:e11126.
    • (2010) PloS One. , vol.5
    • Touchon, M.1    Rocha, E.P.2
  • 75
    • 84859120829 scopus 로고    scopus 로고
    • J Bacteriol. 192:1471-1472.
    • J Bacteriol. , vol.192 , pp. 1471-1472
  • 76
    • 54149083057 scopus 로고    scopus 로고
    • Multiple genome comparison within a bacterial species reveals a unit of evolution spanning two adjacent genes in a tandem paralog cluster
    • Tsuru T, Kobayashi I. 2008. Multiple genome comparison within a bacterial species reveals a unit of evolution spanning two adjacent genes in a tandem paralog cluster. Mol Biol Evol. 25:2457-2473.
    • (2008) Mol Biol Evol. , vol.25 , pp. 2457-2473
    • Tsuru, T.1    Kobayashi, I.2
  • 77
    • 33646891724 scopus 로고    scopus 로고
    • Evolution of paralogous genes: Reconstruction of genome rearrangements through comparison of multiple genomes within Staphylococcus aureus
    • DOI 10.1093/molbev/msk013
    • Tsuru T, et al. 2006. Evolution of paralogous genes: reconstruction of genome rearrangements through comparison of multiple genomes within Staphylococcus aureus. Mol Biol Evol. 23:1269-1285. (Pubitemid 43781600)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.6 , pp. 1269-1285
    • Tsuru, T.1    Kawai, M.2    Mizutani-Ui, Y.3    Uchiyama, I.4    Kobayashi, I.5
  • 78
    • 68249102788 scopus 로고    scopus 로고
    • CRISPR-based adaptive and heritable immunity in prokaryotes
    • van der Oost J, et al. 2009. CRISPR-based adaptive and heritable immunity in prokaryotes. Trends Biochem Sci. 34:401-407.
    • (2009) Trends Biochem Sci. , vol.34 , pp. 401-407
    • Van Der Oost, J.1
  • 79
    • 33746631363 scopus 로고    scopus 로고
    • Sau1: A novel lineage-specific type I restriction-modification system that blocks horizontal gene transfer into Staphylococcus aureus and between S. aureus isolates of different lineages
    • DOI 10.1128/JB.00418-06
    • Waldron DE, Lindsay JA. 2006. Sau1: a novel lineage-specific type I restriction-modification system that blocks horizontal gene transfer into Staphylococcus aureus and between S. aureus isolates of different lineages. J Bacteriol. 188:5578-5585. (Pubitemid 44157315)
    • (2006) Journal of Bacteriology , vol.188 , Issue.15 , pp. 5578-5585
    • Waldron, D.E.1    Lindsay, J.A.2
  • 80
    • 70349944351 scopus 로고    scopus 로고
    • Cryptic lineages of the genus Escherichia
    • doi:AEM.01262-09 [pii] 10.1128/AEM.01262-09
    • Walk ST, et al. 2009. Cryptic lineages of the genus Escherichia. Appl Environ Microbiol. 75:6534-6544 doi:AEM.01262-09 [pii] 10.1128/AEM.01262-09.
    • (2009) Appl Environ Microbiol. , vol.75 , pp. 6534-6544
    • Walk, S.T.1
  • 81
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • DOI 10.1093/molbev/msm088
    • Yang Z. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24:1586-1591. (Pubitemid 47236688)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1586-1591
    • Yang, Z.1
  • 82
    • 27844439855 scopus 로고    scopus 로고
    • Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
    • DOI 10.1093/molbev/msi237
    • Zhang J, Nielsen R, Yang Z. 2005. Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol Biol Evol. 22:2472-2479. (Pubitemid 41661383)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.12 , pp. 2472-2479
    • Zhang, J.1    Nielsen, R.2    Yang, Z.3
  • 83
    • 0141454848 scopus 로고    scopus 로고
    • Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228)
    • Zhang YQ, et al. 2003. Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228). Mol Microbiol. 49:1577-1593.
    • (2003) Mol Microbiol. , vol.49 , pp. 1577-1593
    • Zhang, Y.Q.1


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