Diversity of 175 Wheat Varieties from Yellow and Huai River Valleys Facultative Wheat Zone and Association of SSR Markers with Plant Height and Yield Related Traits;黄淮冬麦区 175 个小麦品种的遗传多样性及 SSR 标记与株高和产量相关性状的关联分析

Acta Agronomica Sinica (China)

Volumn 38, Issue 6, 2012, Pages 1018-1028

  Wu, Yu Guo ^a   Wu, Cheng Lai ^a   Qin, Bao Ping ^a   Wang, Zhen Lin ^a   Huang, Wei ^a   Yang, Min ^a   Yin, Yan Ping ^a  

^a Agricultural University of Shandong   (China)

Author keywords

Allele; Association analysis; Genetic diversity; SSR; Wheat

Indexed keywords

EID: 85010528202     PISSN: 04963490     EISSN: None     Source Type: Journal    
DOI: 10.3724/SP.J.1006.2012.01018     Document Type: Article

References (41)

1. Zhang X-Y(张学勇), Tong Y-P(童依平), You G-X(游光霞), Hao C-Y(郝晨阳), Ge H-M(盖红梅), Wang L-F(王兰芬), Li B(李滨), Dong Y-C(董玉琛), Li Z-S(李振声). Hitchhiking effect mapping: a new approach for discovering agronomic important genes. Sci Agric Sin (中国农业科学), 2006, 39(8): 1526-1535 (in Chinese with English abstract)
2. Salvi S, Tuberosa R. To clone or not to clone plant QTLs: present and future challenges. Trends Plant Sci, 2005, 10: 297-304
3. Farnir F, Coppieters W, Arranz J J, Berzi P, Cambisano N, Grisart B, Karim L, Marcq F, Moreau L, Mni M, Nezer C, Simon P, Vanmanshoven P, Wagenaar D, Georges M. Extensive genome-wide linkage disequilibrium in cattle. Genome Res, 2000, 10: 220-227
4. Kruglyak L. Prospects for whole-genome linkage disequilibrium mapping of common disease genes. Nat Genet, 1999, 22: 139-144
5. Jorde L B. Linkage disequilibrium and the search for complex disease genes. Genome Res, 2000, 10: 1435-1444
6. Wei T-M(魏添梅), Chang X-P(昌小平), Min D-H(闵东红), Jing R-L(景蕊莲). Analysis of genetic diversity and tapping elite alleles for plant height in drought-tolerant wheat varieties. Acta Agron Sin (作物学报), 2010, 36(6): 895-904 (in Chinese with English abstract)
7. Maccaferri M, Sanguineti M C, Enrico N, Roberto T. Population structure and long-range linkage disequilibrium in a durum wheat elite collection. Mol Breed, 2005, 15: 271-289
8. Flint-Garcia S A, Thuillet A C, Yu J M, Pressoir G, Romero S M, Sharon E, Mitchell S E, Doebley J, Kresovich S, Goodman M M, Buckler IV E S. Maize association population: a high-resolution platform for quantitative trait locus dissection. Plant J, 2005, 44: 1054-1064
9. Beló A, Zheng P, Luck S, Shen B, Meyer D J, Li B, Tingey S, Rafalski A. Whole genome scan detects an allelic variant of fad2 associated with increased oleic acid levels in maize. Mol Genet Genomics, 2008, 279: 1-10
10. Andersen J R, Schrag T, Melchinger A E, Zein I, Lübberstedt T. Validation of Dwarf8 polymorphisms associated with flowering time in elite European inbred lines of maize (Zea mays L.). Theor Appl Genet, 2005, 111: 206-217
11. Ducrocq S, Madur D, Veyrieras J B, Camus-Kulandaivelu L, Kloiber-Maitz M, Presterl T, Ouzunova M, Manicacci D, Char-cosset A. Key impact of Vgt1 on flowering time adaptation in maize: evidence from association mapping and ecogeographical information. Genetics, 2008, 178: 2433-2437
12. Gebhardt C, Ballvora A, Walkemeier B, Oberhagemann P, Schüler K. Assessing genetic potential in germplasm collections of crop plants by marker-trait association: a case study for potatoes with quantitative variation of resistance to late blight and maturity type. Mol Breed, 2004, 13: 93-102
13. Simko I, Costanzo S, Haynes K G, Christ B J, Jones R W. Linkage disequilibrium mapping of a Verticillium dahliae resistance quantitative trait locus in tetraploid potato (Solanum tuberosum) through a candidate gene approach. Theor Appl Genet, 2004, 108: 217-224
14. Zhao B(赵波), Ye J(叶剑), Jin W-L(金文林), Zeng C-W(曾潮武), Wu B-M(吴宝美), Pu S-J(濮绍京), Pan J-B(潘金豹), Wan P(万平). Analysis on genetic diversity and trait association of different types of azuki bean (Vigna angularisi) by SSR markers. Sci Agric Sin (中国农业科学), 2011, 44(4): 673-682 (in Chinese with English abstract)
15. Skøt L, Humphreys M O, Armstead I, Heywood S, Skøt K P. An association mapping approach to identify flowering time genes in natural populations of Lolium perenne (L.). Mol Breed, 2005, 15: 233-245
16. Eizonga G C, Agrama H A, Lee F N, Yan W, Jia Y. Identifying novel resistance genes in newly introduced blast resistant rice germplasm. Crop Sci, 2006, 46: 1870-1878
17. Sabharwal V, Negi M S, Banga S S, Lakshmikumaran M. Mapping of AFLP markers linked to seed coat colour loci in Brassica juncea (L.) Czern. Theor Appl Genet, 2004, 109: 160-166
18. Li X-J(李小军), Xu X(徐鑫), Liu W-H(刘伟华), Li X-Q(李秀全), Li L-H(李立会). Genetic diversity of the founder parent Orofen and its progenies revealed by SSR markers. Sci Agric Sin (中国农业科学), 2009, 42(10): 3397-3404 (in Chinese with English abstract)
19. Edwards K, Johnstone C, Thompson C. A simple and rapid method for the preparation of plant genomic DNA for PCR analysis. Nucl Acids Res, 1991, 19: 1349
20. Wang L-X(王立新), Zhao C-P(赵昌平), Qiu J(邱军), Li H-B(李宏博), Ge L-L(葛玲玲), Sun H(孙辉), Yao J(姚骥). A new scoring method of SSR patterns for wheat. J Triticeae Crops (麦类作物学报). 2006, 26(4): 164-168 (in Chinese with English abstract)
21. Liu K J, Muse S V. PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics, 2005, 21: 2128-2129
22. Pritchard J K, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics, 2000, 155: 945-959
23. Breseghello F, Sorrells M E. Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics, 2006, 172: 1165-1177
24. Edward Buckler Laboratory. Maize Diversity Research. [2007-01-30]. http://www.maizegenetics.net/bioinformatics/tassel
25. Evanno G, Regnaut S, Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol, 2005, 14: 2611-2620
26. Li Z-K(李卓坤), Xie Q-G(谢全刚), Zhu Z-L(朱占玲), Liu J-L(刘金良), Han S-X(韩淑晓), Tian B(田宾), Yuan Q-Q(袁倩倩), Tian J-C(田纪春). Analysis of plant height heterosis based on QTL mapping in wheat. Acta Agron Sin (作物学报), 2010, 36(5): 771-778 (in Chinese with English abstract)
27. Zhang K-P(张坤普), Xu X-B(徐献斌), Tian J-C(田纪春). QTL mapping for grain yield and spike related traits in common wheat. Acta Agron Sin (作物学报), 2009, 35(2): 270-278 (in Chinese with English abstract)
28. Gupta P K, Rustgi S, Kulwal P L. Linkage disequilibrium and association studies in higher plants: present status and future prospects. Plant Mol Biol, 2005, 57: 461-485
29. Chen X-M(陈新民), He Z-H(何中虎), Shi J-R(史建荣), Xia L-Q(夏兰芹), Ward R, Zhou Y(周阳), Jiang G-L(蒋国梁). Genetic diversity of high quality winter wheat varieties (lines) based on SSR markers. Acta Agron Sin (作物学报), 2003, 29(1): 13-19 (in Chinese with English abstract)
30. Zwart R S, Muylle H, Van Boekstaele E V, Roldán-Ruiz I. Evaluation of genetic diversity of Fusarium head blight resistance in European winter wheat. Theor Appl Genet, 2008, 117: 813-828
31. Hao C-Y(郝晨阳), Dong Y-C(董玉琛), Wang L-F(王兰芬), You G-X(游光霞), Zhang H-N(张洪娜), Ge H-M(盖红梅), Jia J-Z(贾继增), Zhang X-Y(张学勇). The construction of common wheat core germplasm and analysis of genetic diversity in our country. Sci Bull (科学通报), 2008, 53(8): 908-915 (in Chinese)
32. Harris B P, Stokesbury K D E. The spatial structure of local surficial sediment characteristics on Georges Bank, USA. Continental Shelf Res, 2010, 30: 1840-1853
33. Kline J B, Moore D J, Clevenger C V. Activation and association of the Tec tyrosine kinase with the human prolactin receptor: mapping of a Tec/Vav-receptor binding site. Mol Biol Cell, 2000, 15: 832-841
34. Wei S-P(魏世平), Liu X-F(刘晓芬), Yang S-X(杨胜先), Lü H-Y(吕海燕), Niu Y(牛远), Zhang Y-M(章元明). Comparison of various clustering methods for population structure in Chinese cultivated soybean [Glycine max (L.) Merr.] J Nanjing Agric Univ (南京农业大学学报), 2011, 34(2): 13-17 (in Chinese with English abstract)
35. Virk P S, Ford-Lloyd B V, Jackson M T, Pooni H S, Clemeno T P, Newbury H J. Predicting quantitative variation within rice germplasm using molecular markers. Heredity, 1996, 76: 296-304
36. Pritchard J K, Stephens M, Rosenberg N A, Donnelly P. Association mapping in structured populations. Am J Hum Genet, 2000, 67: 170-181
37. Kraakman A T, Niks R E, Berg P M, Stam P, Eeuwijk F A. Linkage disequilibrium mapping of yield and yield stability in modern spring barley cultivars. Genetics, 2004, 168: 435-446
38. Agrama H A, Eizenga G C, Yan W. Association mapping of yield and its components in rice cultivars. Mol Breed, 2007, 19: 341-356
39. Yao J, Wang L X, Liu L H, Zhao C P, Zheng Y L. Association mapping of agronomic traits on chromosome 2A of wheat. Genetica, 2009, 137: 67-75
40. Sears E R. The aneuploids of common wheat. Mo Agric Exp Stn Res Bull, 1954, 572: 3-58
41. Zhou M-P(周淼平), Huang Y-H(黄益洪), Ren L-J(任丽娟). Detection of QTLs for plant height in wheat using RILs. Jiangsu J Agric Sci (江苏农业科学), 2004, 20(4): 201-206 (in Chinese with English abstract)