Identifying novel resistance genes in newly introduced blast resistant rice germplasm

Crop Science

Volumn 46, Issue 5, 2006, Pages 1870-1878

  Eizenga, G C ^a   Agrama, H A ^b   Lee, F N ^b   Yan, W ^a   Jia, Y ^a  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b UNIVERSITY OF ARKANSAS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HYPHOMYCETES; MAGNAPORTHE; MAGNAPORTHE ORYZAE; ORYZA SATIVA; THANATEPHORUS CUCUMERIS;

EID: 33749506270     PISSN: 0011183X     EISSN: None     Source Type: Journal    
DOI: 10.2135/cropsci2006.0143     Document Type: Article

References (39)

1. Bolstein, D., R.L. White, M. Skolnick, and R.W. Davis. 1980. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. Hum. Genet. 32:314-331.
2. Bonman, J.M. 1992. Blast. p. 14-17. In R.K. Webster and P.S. Gunnell (ed.) Compendium of rice diseases. APS Press, St. Paul, MN.
3. Bryan, B.T., K.-S. Wu, L. Farrall, Y. Jia, H. Hershey, S. McAdams, R. Tarchini, G. Donaldson, K. Faulk, and B. Valent. 2000. A single amino acid difference distinguishes resistant and susceptible allele of the rice blast resistance gene Pi-ta. Plant Cell 12:2033-2045.
4. Conaway-Bormans, C.A., M.A. Marchetti, C.W. Johnson, A.M. McClung, and W.D. Park. 2003. Molecular markers linked to the blast resistance gene Pi-z in rice for use in marker-assisted selection. Theor. Appl. Genet. 107:1014-1020.
5. Correll, J.C., T.L. Harp, J.C. Guerber, R.S. Zeigler, B. Liu, R.D. Cartwright, and F.N. Lee. 2000. Characterization of Pyricularia grisea in the United States using independent genetic and molecular markers. Phytopathology 90:1396-1404.
6. Couch, B.C., and L.M. Kohn. 2002. A multilocus gene geneology concordant with host preference indicates segregation of a new species, Magnaporthe oryzae, from M. grisea. Mycologia 94:683-693.
7. Dilday, R.H. 1990. Contributions of ancestral lines in the development of new cultivars of rice. Crop Sci. 30:905-911.
8. Dilday, R.H., W.G. Yan, K.A. Moldenhauer, J.W. Gibbons, F.N. Lee, and R.J. Bryant. 2001. Chinese and other foreign germplasm evaluation. In R.J. Norman and J.-F. Meullenet (ed.) B.R. Wells Rice Research Studies 2000. Univ. of Arkansas Agric. Exp. Stn. Res. Ser. 485:1-12.
9. Eizenga, G.C., and T.D. Phillips. 1997. Characterization of tall fescue plantlets regenerated from cultured panicle segments-anthers for meiotic, isozyme and DNA changes. Trans. Kentucky Acad. Sci. 58(2):60-66.
10. Fjellstrom, R.G., C.A. Conaway-Bormans, A.M. McClung, M.A. Marchetti, A.R. Shank, and W.D. Park. 2004. Development of DNA markers suitable for marker assisted selection of three Pi genes conferring resistance to multiple Pyricularia grisea pathotypes. Crop Sci. 44:1790-1798.
11. Fjellstrom, R.G., A.M. McClung, and A.R. Shank. 2006. SSR markers closely linked to the Pi-z locus are useful for selection of blast resistance in a broad array of rice germplasm. Mol. Breed. 17:149-157.
12. Garris, A.J., T.H. Tai, J. Coburn, S. Kresovich, and S.R. McCouch. 2005. Genetic structure and diversity in Oryza sativa L. Genetics 169:1631-1638.
13. Hayashi, K., N. Hashimoto, M. Daigen, and I. Ashikawa. 2004. Development of PCR-based SNP markers for rice blast resistance genes at the Pi-z locus. Theor. Appl. Genet. 108:1212-1220.
14. Jia, Y., M. Redus, Z. Wang, and J.N. Rutger. 2004a. Development of a SNLP marker from the Pi-ta blast resistance gene by tri-primer PCR. Euphytica 138:97-105.
15. Jia, Y., Z. Wang, and P. Singh. 2002. Development of dominant rice blast Pi-ta resistance gene markers. Crop Sci. 42:2145-2149.
16. Jia, Y., Z. Wang, R.G. Fjelistrom, K.A.K. Moldenhauer, M.A. Azam, J. Correll, F.N. Lee, Y. Xia, and J.N. Rutger. 2004b. Rice Pi-ta gene confers resistance to the major pathotypes of the rice blast fungus in the US. Phytopathology 94:296-301.
17. Kiyosawa, S. 1972. Genetics of blast resistance. p. 203-225. In Rice breeding. IRRI, Manila, Philippines.
18. Lee, F.N. 1994. Rice breeding programs, blast epidemics and blast management in the United States. p. 489-500. In R.S. Ziegler, S.A. Leong, and P.S. Teng (ed.). Rice Blast Disease. CAB Int., Wallingford, UK.
19. Lee, F.N., W.G. Yan, J.W. Gibbons, M.J. Emerson, and S.D. Clark. 2003. Rice blast and sheath blight evaluation results for newly introduced rice germplasm. In R.J. Norman, and J.-F. Meullenet (ed.). B.R. Wells Rice Research Studies 2002. Univ. of Arkansas Agric. Exp. Stn. Res. Ser. 504:85-92.
20. Lu, H., M.A. Redus, J.R. Coburn, J.N. Rutger, S.R. McCouch, and T.H. Tai. 2005. Population structure and breeding patterns of 145 U.S. rice cultivars based on SSR marker analysis. Crop Sci. 45:66-76.
21. Mackill, D.J., and K.S. McKenzie. 2003. Origin and characteristics of U.S. rice cultivars. p. 87-100. In C.W. Smith and R.H. Dilday (ed.) Rice: Origin, history, technology, and production. John Wiley & Sons, New Jersey.
22. McClung, A.M., R.G. Fjellstrom, C.J. Bergman, C.A. Bormans, W.D. Park, and M.A. Marchetti. 2004. Registration of 'Saber' rice. Crop Sci. 44:693-694.
23. McCouch, S.R., M.L. Teytelman, Y. Xu, K.B. Lobos, K. Clare, M. Walton, B. Fu, R. Maghirang, Z. Li, Y. Xing, Q. Zhang, I. Kono, M. Yano, R. Fjellstrom, G. DeClerck, D. Schneider, S. Carinhour, D. Ware, and L. Stein. 2002. Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res. 9:199-207.
24. McCouch, S.R., R.J. Nelson, J. Tohme, and R.S. Ziegler. 1994. Mapping of blast resistance genes in rice. p. 167-186. In R.S. Ziegler, S.A. Leong, and P.S. Teng (ed.) Rice Blast Disease. CAB International, Oxon, UK.
25. Moldenhauer, K.A.K., F.N. Lee, R.J. Norman, R.S. Helms, B.R. Wells, R.H. Dilday, P.C. Rohman, and M.A. Marchetti. 1990. Registration of 'Katy' rice. Crop Sci. 30:747.
26. Moldenhauer, K.A.K., F.N. Lee, J.L. Bernhardt, R.J. Norman, N.A. Slaton, C.E. Wilson, M. Anders, M.M. Blocker, and A.C. Tolbert. 2000. 'Wells', a high-yielding, long-grain rice cultivar. In R.J. Norman, and T.H. Johnston (ed.). B.R. Wells Rice Research Studies 1999. Univ. of Arkansas Agric. Exp. Stn. Res. Ser. 468:463-468.
27. Monosi, B., R.J. Wisser, L. Pennill, and S.H. Hulbert. 2004. Full-genome analysis of resistance gene homologues in rice. Theor. Appl. Genet. 109:1423-1447.
28. Nei, M. 1972. Genetic distance between populations. Am. Nat. 106:283-292.
29. Pinson, S.R.M., F.M. Capdevielle, and J.H. Oard. 2005. Confirming QTLs and finding additional loci conditioning sheath blight resistance in rice (Oryza sativa L.) using recombinant inbred lines. Crop Sci. 45:503-510.
30. Ramalingam, J., C.M. Vera Cruz, K. Kukreja, J.M. Chittoor, J.-L. Wu, S.W. Lee, B. Baraoidan, M.L. George, M.B. Cohen, S.H. Hulbert, J.E. Leach, and H. Leung. 2003. Candidate defense genes from rice, barley, and maize and their association with qualitative and quantitative resistance in rice. Mol. Plant Microbe Interact. 16:14-24.
31. Rohlf, F.J. 1997. NTSYSpc numerical taxonomy and multivariate analysis system. Version 2.02. Exeter Software, Setauket, New York.
32. Rush, M.C., and F.N. Lee. 1992. Sheath blight. p. 22-23. In R.K. Webster and P.S. Gunnell (ed.) Compendium of rice diseases. APS Press, St. Paul, MN.
33. Searle, S.R. 1987. Linear Models for Unbalanced Data. John Wiley & Sons, New Jersey.
34. Thornsberry, J.M., M.M. Goodman, J. Doebley, S. Kresovich, D. Nielsen, and E.D. Buckler, IV 2001. Dwarf8 polymorphisms associate with variation in flowering time. Nat. Genet. 28:286-289.
35. Voorrips, R.E. 2002. MapChart: Software for the graphical presentation of linkage maps and QTLs. J. Hered. 93:77-78.
36. Wang, Z.-X., M. Yano, U. Yamanouchi, M. Iwamoto, L. Monna, H. Hayasaka, Y. Katayose, and T. Sasaki. 1999. The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes. Plant J. 19:55-64.
37. Yan, W.G., F.N. Lee, J.N. Rutger, K.A.K. Moldenhauer, and J.W. Gibbons. 2002. Chinese germplasm evaluation for yield and disease resistance. In R.J. Norman and J.-F. Meullenet (ed.) B.R. Wells Rice Research Studies 2001. Univ. of Arkansas Agric. Exp. Stn. Res. Ser. 495:349-358.
38. Yan, W.G., J.N. Rutger, R.J. Bryant, F.N. Lee, and J.W. Gibbons. 2003. Characteristics of newly-introduced accessions in the USDA-ARS rice quarantine program In R.J. Norman and J.-F. Meullenet (ed.) B.R. Wells Rice Research Studies 2002. Univ. of Arkansas Agric. Exp. Stn. Res. Ser. 504:112-124.
39. Zou, J.H., X.B. Pan, Z.X. Chen, J.Y. Xu, J.F. Lu, W.X. Zhai, and L.H. Zhu. 2000. Mapping quantitative trait loci controlling sheath blight resistance in two rice cultivars (Oryza sativa L.). Theor. Appl. Genet. 101:569-573.