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Volumn 1, Issue 3, 2016, Pages 207-214

Development of Streptomyces sp. FR-008 as an emerging chassis

Author keywords

[No Author keywords available]

Indexed keywords

ABC TRANSPORTER; POLYKETIDE SYNTHASE; TRANSCRIPTOME;

EID: 85009956438     PISSN: None     EISSN: 2405805X     Source Type: Journal    
DOI: 10.1016/j.synbio.2016.07.002     Document Type: Article
Times cited : (35)

References (39)
  • 1
    • 84922106952 scopus 로고    scopus 로고
    • An analysis of FDA-approved drugs: natural products and their derivatives
    • [1] Patridge, E., Gareiss, P., Kinch, M.S., Hoyer, D., An analysis of FDA-approved drugs: natural products and their derivatives. Drug Discov Today 21 (2016), 204–207.
    • (2016) Drug Discov Today , vol.21 , pp. 204-207
    • Patridge, E.1    Gareiss, P.2    Kinch, M.S.3    Hoyer, D.4
  • 2
    • 84893170608 scopus 로고    scopus 로고
    • Recent advances in the heterologous expression of microbial natural product biosynthetic pathways
    • [2] Ongley, S.E., Bian, X., Neilan, B.A., Müller, R., Recent advances in the heterologous expression of microbial natural product biosynthetic pathways. Nat Prod Rep 30 (2013), 1121–1138.
    • (2013) Nat Prod Rep , vol.30 , pp. 1121-1138
    • Ongley, S.E.1    Bian, X.2    Neilan, B.A.3    Müller, R.4
  • 3
    • 84952705410 scopus 로고    scopus 로고
    • Prospecting for new bacterial metabolites: a glossary of approaches for inducing, activating and upregulating the biosynthesis of bacterial cryptic or silent natural products
    • [3] Zarins-Tutt, J.S., Barberi, T.T., Gao, H., Mearns-Spragg, A., Zhang, L., Newman, D.J., et al. Prospecting for new bacterial metabolites: a glossary of approaches for inducing, activating and upregulating the biosynthesis of bacterial cryptic or silent natural products. Nat Prod Rep 33 (2016), 54–72.
    • (2016) Nat Prod Rep , vol.33 , pp. 54-72
    • Zarins-Tutt, J.S.1    Barberi, T.T.2    Gao, H.3    Mearns-Spragg, A.4    Zhang, L.5    Newman, D.J.6
  • 4
    • 84910067865 scopus 로고    scopus 로고
    • Mining the metabiome: identifying novel natural products from microbial communities
    • [4] Milshteyn, A., Schneider, J.S., Brady, S.F., Mining the metabiome: identifying novel natural products from microbial communities. Chem Biol 21 (2014), 1211–1223.
    • (2014) Chem Biol , vol.21 , pp. 1211-1223
    • Milshteyn, A.1    Schneider, J.S.2    Brady, S.F.3
  • 5
    • 84979964893 scopus 로고    scopus 로고
    • Engineering microbial hosts for production of bacterial natural products
    • [5] Zhang, M.M., Wang, Y., Ang, E.L., Zhao, H., Engineering microbial hosts for production of bacterial natural products. Nat Prod Rep 33 (2016), 963–987.
    • (2016) Nat Prod Rep , vol.33 , pp. 963-987
    • Zhang, M.M.1    Wang, Y.2    Ang, E.L.3    Zhao, H.4
  • 6
    • 14544294545 scopus 로고    scopus 로고
    • Bioactive microbial metabolites
    • [6] Berdy, J., Bioactive microbial metabolites. J Antibiot (Tokyo) 58 (2005), 1–26.
    • (2005) J Antibiot (Tokyo) , vol.58 , pp. 1-26
    • Berdy, J.1
  • 7
    • 0001747786 scopus 로고    scopus 로고
    • Genetic contributions to understanding polyketide synthases
    • [7] Hopwood, D.A., Genetic contributions to understanding polyketide synthases. Chem Rev 97 (1997), 2465–2498.
    • (1997) Chem Rev , vol.97 , pp. 2465-2498
    • Hopwood, D.A.1
  • 8
    • 0003869903 scopus 로고    scopus 로고
    • Practical Streptomyces genetics
    • John Innes Foundation Norwich, United Kingdom
    • [8] Kieser, T., Bibb, M.J., Buttner, M.J., Chater, K.F., Hopwood, D.A., Practical Streptomyces genetics. 2000, John Innes Foundation, Norwich, United Kingdom.
    • (2000)
    • Kieser, T.1    Bibb, M.J.2    Buttner, M.J.3    Chater, K.F.4    Hopwood, D.A.5
  • 9
  • 10
    • 0032921036 scopus 로고    scopus 로고
    • Recombinant polyketide synthesis in Streptomyces: engineering of improved host strains
    • [10] Ziermann, R., Betlach, M.C., Recombinant polyketide synthesis in Streptomyces: engineering of improved host strains. Biotechniques 26 (1999), 106–110.
    • (1999) Biotechniques , vol.26 , pp. 106-110
    • Ziermann, R.1    Betlach, M.C.2
  • 11
    • 79951846247 scopus 로고    scopus 로고
    • Engineering Streptomyces coelicolor for heterologous expression of secondary metabolite gene clusters
    • [11] Gomez-Escribano, J.P., Bibb, M.J., Engineering Streptomyces coelicolor for heterologous expression of secondary metabolite gene clusters. Microb Biotechnol 4 (2011), 207–215.
    • (2011) Microb Biotechnol , vol.4 , pp. 207-215
    • Gomez-Escribano, J.P.1    Bibb, M.J.2
  • 12
    • 0035834039 scopus 로고    scopus 로고
    • Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites
    • [12] Omura, S., Ikeda, H., Ishikawa, J., Hanamoto, A., Takahashi, C., Shinose, M., et al. Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites. Proc Natl Acad Sci U. S. A 98 (2001), 12215–12220.
    • (2001) Proc Natl Acad Sci U. S. A , vol.98 , pp. 12215-12220
    • Omura, S.1    Ikeda, H.2    Ishikawa, J.3    Hanamoto, A.4    Takahashi, C.5    Shinose, M.6
  • 13
    • 0038561132 scopus 로고    scopus 로고
    • Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis
    • [13] Ikeda, H., Ishikawa, J., Hanamoto, A., Shinose, M., Kikuchi, H., Shiba, T., et al. Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis. Nat Biotechnol 21 (2003), 526–531.
    • (2003) Nat Biotechnol , vol.21 , pp. 526-531
    • Ikeda, H.1    Ishikawa, J.2    Hanamoto, A.3    Shinose, M.4    Kikuchi, H.5    Shiba, T.6
  • 14
    • 77249153701 scopus 로고    scopus 로고
    • Genome-minimized Streptomyces host for the heterologous expression of secondary metabolism
    • [14] Komatsu, M., Uchiyama, T., Omura, S., Cane, D.E., Ikeda, H., Genome-minimized Streptomyces host for the heterologous expression of secondary metabolism. Proc Natl Acad Sci U. S. A 107 (2010), 2646–2651.
    • (2010) Proc Natl Acad Sci U. S. A , vol.107 , pp. 2646-2651
    • Komatsu, M.1    Uchiyama, T.2    Omura, S.3    Cane, D.E.4    Ikeda, H.5
  • 15
    • 84872287714 scopus 로고    scopus 로고
    • Engineered Streptomyces avermitilis host for heterologous expression of biosynthetic gene cluster for secondary metabolites
    • [15] Komatsu, M., Uchiyama, T., Omura, S., Cane, D.E., Ikeda, H., Engineered Streptomyces avermitilis host for heterologous expression of biosynthetic gene cluster for secondary metabolites. ACS Synth Biol 2 (2013), 384–396.
    • (2013) ACS Synth Biol , vol.2 , pp. 384-396
    • Komatsu, M.1    Uchiyama, T.2    Omura, S.3    Cane, D.E.4    Ikeda, H.5
  • 17
    • 0347753488 scopus 로고    scopus 로고
    • Expression of the landomycin biosynthetic gene cluster in a PKS mutant of Streptomyces fradiae is dependent on the coexpression of a putative transcriptional activator gene
    • [17] von Mulert, U., Luzhetskyy, A., Hofmann, C., Mayer, A., Bechthold, A., Expression of the landomycin biosynthetic gene cluster in a PKS mutant of Streptomyces fradiae is dependent on the coexpression of a putative transcriptional activator gene. FEMS Microbiol Lett 230 (2004), 91–97.
    • (2004) FEMS Microbiol Lett , vol.230 , pp. 91-97
    • von Mulert, U.1    Luzhetskyy, A.2    Hofmann, C.3    Mayer, A.4    Bechthold, A.5
  • 18
    • 77952888809 scopus 로고    scopus 로고
    • Toward design-based engineering of industrial microbes
    • [18] Tyo, K.E., Kocharin, K., Nielsen, J., Toward design-based engineering of industrial microbes. Curr Opin Microbiol 13 (2010), 255–262.
    • (2010) Curr Opin Microbiol , vol.13 , pp. 255-262
    • Tyo, K.E.1    Kocharin, K.2    Nielsen, J.3
  • 19
    • 20544459270 scopus 로고
    • Studies on fusion breeding of protoplasts from antibiotic producing strain 5102
    • [19] Liang, R.F., Zhou, Q., Studies on fusion breeding of protoplasts from antibiotic producing strain 5102. Chin J Biotechnol 3 (1987), 130–136.
    • (1987) Chin J Biotechnol , vol.3 , pp. 130-136
    • Liang, R.F.1    Zhou, Q.2
  • 20
    • 0345531148 scopus 로고    scopus 로고
    • Organizational and mutational analysis of a complete FR-008/candicidin gene cluster encoding a structurally related polyene complex
    • [20] Chen, S., Huang, X., Zhou, X., Bai, L., He, J., Jeong, K.J., et al. Organizational and mutational analysis of a complete FR-008/candicidin gene cluster encoding a structurally related polyene complex. Chem Biol 10 (2003), 1065–1076.
    • (2003) Chem Biol , vol.10 , pp. 1065-1076
    • Chen, S.1    Huang, X.2    Zhou, X.3    Bai, L.4    He, J.5    Jeong, K.J.6
  • 21
    • 82455167849 scopus 로고    scopus 로고
    • Enhancing macrolide production in Streptomyces by coexpressing three heterologous genes
    • [21] Wang, T., Bai, L., Zhu, D., Lei, X., Liu, G., Deng, Z., et al. Enhancing macrolide production in Streptomyces by coexpressing three heterologous genes. Enzyme Microb Technol 50 (2012), 5–9.
    • (2012) Enzyme Microb Technol , vol.50 , pp. 5-9
    • Wang, T.1    Bai, L.2    Zhu, D.3    Lei, X.4    Liu, G.5    Deng, Z.6
  • 22
    • 0024327340 scopus 로고
    • Intergeneric conjugation between Escherichia coli and Streptomyces species
    • [22] Mazodier, P., Petter, R., Thompson, C., Intergeneric conjugation between Escherichia coli and Streptomyces species. J Bacteriol 171 (1989), 3583–3585.
    • (1989) J Bacteriol , vol.171 , pp. 3583-3585
    • Mazodier, P.1    Petter, R.2    Thompson, C.3
  • 23
    • 84883664726 scopus 로고    scopus 로고
    • Reducing assembly complexity of microbial genomes with single-molecule sequencing
    • [23] Koren, S., Harhay, G.P., Smith, T.P., Bono, J.L., Harhay, D.M., McVey, S.D., et al. Reducing assembly complexity of microbial genomes with single-molecule sequencing. Genome Biol, 14, 2013, R101.
    • (2013) Genome Biol , vol.14 , pp. R101
    • Koren, S.1    Harhay, G.P.2    Smith, T.P.3    Bono, J.L.4    Harhay, D.M.5    McVey, S.D.6
  • 24
    • 84880798154 scopus 로고    scopus 로고
    • Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
    • [24] Chin, C.S., Alexander, D.H., Marks, P., Klammer, A.A., Drake, J., Heiner, C., et al. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat Methods 10 (2013), 563–569.
    • (2013) Nat Methods , vol.10 , pp. 563-569
    • Chin, C.S.1    Alexander, D.H.2    Marks, P.3    Klammer, A.A.4    Drake, J.5    Heiner, C.6
  • 26
    • 84979859096 scopus 로고    scopus 로고
    • antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters
    • [26] Weber, T., Blin, K., Duddela, S., Krug, D., Kim, H.U., Bruccoleri, R., et al. antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters. Nucleic Acids Res 43 (2015), W237–W243.
    • (2015) Nucleic Acids Res , vol.43 , pp. W237-W243
    • Weber, T.1    Blin, K.2    Duddela, S.3    Krug, D.4    Kim, H.U.5    Bruccoleri, R.6
  • 27
  • 29
    • 77955009848 scopus 로고    scopus 로고
    • Two pHZ1358-derivative vectors for efficient gene knockout in streptomyces
    • [29] He, Y., Wang, Z., Bai, L., Liang, J., Zhou, X., Deng, Z., Two pHZ1358-derivative vectors for efficient gene knockout in streptomyces. J Microbiol Biotechnol 20 (2010), 678–682.
    • (2010) J Microbiol Biotechnol , vol.20 , pp. 678-682
    • He, Y.1    Wang, Z.2    Bai, L.3    Liang, J.4    Zhou, X.5    Deng, Z.6
  • 30
    • 84942910137 scopus 로고    scopus 로고
    • Exploiting a precise design of universal synthetic modular regulatory elements to unlock the microbial natural products in Streptomyces
    • [30] Bai, C., Zhang, Y., Zhao, X., Hu, Y., Xiang, S., Miao, J., et al. Exploiting a precise design of universal synthetic modular regulatory elements to unlock the microbial natural products in Streptomyces. Proc Natl Acad Sci U. S. A 112 (2015), 12181–12186.
    • (2015) Proc Natl Acad Sci U. S. A , vol.112 , pp. 12181-12186
    • Bai, C.1    Zhang, Y.2    Zhao, X.3    Hu, Y.4    Xiang, S.5    Miao, J.6
  • 32
    • 84942108500 scopus 로고    scopus 로고
    • Systematic identification of a panel of strong constitutive promoters from streptomyces albus
    • [32] Luo, Y., Zhang, L., Barton, K.W., Zhao, H., Systematic identification of a panel of strong constitutive promoters from streptomyces albus. ACS Synth Biol 4 (2015), 1001–1010.
    • (2015) ACS Synth Biol , vol.4 , pp. 1001-1010
    • Luo, Y.1    Zhang, L.2    Barton, K.W.3    Zhao, H.4
  • 33
    • 0026645203 scopus 로고
    • Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to Streptomyces spp
    • [33] Bierman, M., Logan, R., O'Brien, K., Seno, E.T., Rao, R.N., Schoner, B.E., Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to Streptomyces spp. Gene 116 (1992), 43–49.
    • (1992) Gene , vol.116 , pp. 43-49
    • Bierman, M.1    Logan, R.2    O'Brien, K.3    Seno, E.T.4    Rao, R.N.5    Schoner, B.E.6
  • 34
    • 84881257161 scopus 로고    scopus 로고
    • Design, construction and characterisation of a synthetic promoter library for fine-tuned gene expression in actinomycetes
    • [34] Siegl, T., Tokovenko, B., Myronovskyi, M., Luzhetskyy, A., Design, construction and characterisation of a synthetic promoter library for fine-tuned gene expression in actinomycetes. Metab Eng 19 (2013), 98–106.
    • (2013) Metab Eng , vol.19 , pp. 98-106
    • Siegl, T.1    Tokovenko, B.2    Myronovskyi, M.3    Luzhetskyy, A.4
  • 35
    • 33646584815 scopus 로고    scopus 로고
    • arsRBOCT arsenic resistance system encoded by linear plasmid pHZ227 in Streptomyces sp. strain FR-008
    • [35] Wang, L., Chen, S., Xiao, X., Huang, X., You, D., Zhou, X., et al. arsRBOCT arsenic resistance system encoded by linear plasmid pHZ227 in Streptomyces sp. strain FR-008. Appl Environ Microbiol 72 (2006), 3738–3742.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 3738-3742
    • Wang, L.1    Chen, S.2    Xiao, X.3    Huang, X.4    You, D.5    Zhou, X.6
  • 36
    • 84941074753 scopus 로고    scopus 로고
    • Chromosome position effects on gene expression in Escherichia coli K-12
    • [36] Bryant, J.A., Sellars, L.E., Busby, S.J., Lee, D.J., Chromosome position effects on gene expression in Escherichia coli K-12. Nucleic Acids Res 42 (2014), 11383–11392.
    • (2014) Nucleic Acids Res , vol.42 , pp. 11383-11392
    • Bryant, J.A.1    Sellars, L.E.2    Busby, S.J.3    Lee, D.J.4
  • 37
  • 38
    • 57149116350 scopus 로고    scopus 로고
    • Selective removal of aberrant extender units by a type II thioesterase for efficient FR-008/candicidin biosynthesis in Streptomyces sp. strain FR-008
    • [38] Zhou, Y., Meng, Q., You, D., Li, J., Chen, S., Ding, D., et al. Selective removal of aberrant extender units by a type II thioesterase for efficient FR-008/candicidin biosynthesis in Streptomyces sp. strain FR-008. Appl Environ Microbiol 74 (2008), 7235–7242.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 7235-7242
    • Zhou, Y.1    Meng, Q.2    You, D.3    Li, J.4    Chen, S.5    Ding, D.6
  • 39
    • 84890086658 scopus 로고    scopus 로고
    • Activation and characterization of a cryptic polycyclic tetramate macrolactam biosynthetic gene cluster
    • [39] Luo, Y., Huang, H., Liang, J., Wang, M., Lu, L., Shao, Z., et al. Activation and characterization of a cryptic polycyclic tetramate macrolactam biosynthetic gene cluster. Nat Commun, 4, 2013, 2894.
    • (2013) Nat Commun , vol.4 , pp. 2894
    • Luo, Y.1    Huang, H.2    Liang, J.3    Wang, M.4    Lu, L.5    Shao, Z.6


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