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Volumn 8, Issue 1, 2016, Pages

Species-level core oral bacteriome identified by 16S rRNA pyrosequencing in a healthy young Arab population

Author keywords

Core; High throughput nucleotide sequencing; Human; Microbiome; Mouth; Pyrosequencing

Indexed keywords

RNA 16S;

EID: 85009944986     PISSN: None     EISSN: 20002297     Source Type: Journal    
DOI: 10.3402/jom.v8.31444     Document Type: Article
Times cited : (13)

References (34)
  • 1
    • 84928346682 scopus 로고    scopus 로고
    • Application of high-throughput sequencing in understanding human oral microbiome related with health and disease
    • Chen H, Jiang W. Application of high-throughput sequencing in understanding human oral microbiome related with health and disease. Front Microbiol 2014; 5: 508.
    • (2014) Front Microbiol , vol.5 , pp. 508
    • Chen, H.1    Jiang, W.2
  • 2
    • 84938676026 scopus 로고    scopus 로고
    • Inter-individual differences in the oral bacteriome are greater than intra-day fluctuations in individuals
    • Sato Y, Yamagishi J, Yamashita R, Shinozaki N, Ye B, Yamada T, et al. Inter-individual differences in the oral bacteriome are greater than intra-day fluctuations in individuals. PLoS One 2015; 10: e0131607.
    • (2015) PLoS One , vol.10
    • Sato, Y.1    Yamagishi, J.2    Yamashita, R.3    Shinozaki, N.4    Ye, B.5    Yamada, T.6
  • 4
    • 0037292394 scopus 로고    scopus 로고
    • Are dental diseases examples of ecological catastrophes?
    • Marsh PD. Are dental diseases examples of ecological catastrophes? Microbiology 2003; 149: 279-94.
    • (2003) Microbiology , vol.149 , pp. 279-294
    • Marsh, P.D.1
  • 5
    • 84863000773 scopus 로고    scopus 로고
    • Pyrosequencing as a tool for better understanding of human microbiomes
    • Siqueira JF Jr., Fouad AF, Rocas IN. Pyrosequencing as a tool for better understanding of human microbiomes. J Oral Microbiol 2012; 4: 10743, doi: http://dx.doi.org/10.3402/jom. v4i0.10743
    • (2012) J Oral Microbiol , vol.4 , pp. 10743
    • Siqueira, J.F.1    Fouad, A.F.2    Rocas, I.N.3
  • 6
    • 79960895899 scopus 로고    scopus 로고
    • Oral microbiome profiles: 16S rRNA pyrosequencing and microarray assay comparison
    • Ahn J, Yang L, Paster BJ, Ganly I, Morris L, Pei Z, et al. Oral microbiome profiles: 16S rRNA pyrosequencing and microarray assay comparison. PLoS One 2011; 6: e22788.
    • (2011) PLoS One , vol.6
    • Ahn, J.1    Yang, L.2    Paster, B.J.3    Ganly, I.4    Morris, L.5    Pei, Z.6
  • 9
    • 83155185460 scopus 로고    scopus 로고
    • Preliminary characterization of the oral microbiota of Chinese adults with and without gingivitis
    • Huang S, Yang F, Zeng X, Chen J, Li R, Wen T, et al. Preliminary characterization of the oral microbiota of Chinese adults with and without gingivitis. BMC Oral Health 2011; 11: 33.
    • (2011) BMC Oral Health , vol.11 , pp. 33
    • Huang, S.1    Yang, F.2    Zeng, X.3    Chen, J.4    Li, R.5    Wen, T.6
  • 10
    • 84862173705 scopus 로고    scopus 로고
    • A core human microbiome as viewed through 16S rRNA sequence clusters
    • Huse SM, Ye Y, Zhou Y, Fodor AA. A core human microbiome as viewed through 16S rRNA sequence clusters. PLoS One 2012; 7: e34242.
    • (2012) PLoS One , vol.7
    • Huse, S.M.1    Ye, Y.2    Zhou, Y.3    Fodor, A.A.4
  • 13
    • 74949134895 scopus 로고    scopus 로고
    • Defining the healthy 'core microbiome' of oral microbial communities
    • Zaura E, Keijser BJ, Huse SM, Crielaard W. Defining the healthy 'core microbiome' of oral microbial communities. BMC Microbiol 2009; 9: 259.
    • (2009) BMC Microbiol , vol.9 , pp. 259
    • Zaura, E.1    Keijser, B.J.2    Huse, S.M.3    Crielaard, W.4
  • 14
    • 84924137629 scopus 로고    scopus 로고
    • Comparative analysis of the human saliva microbiome from different climate zones: Alaska, Germany, and Africa
    • Li J, Quinque D, Horz HP, Li M, Rzhetskaya M, RaffJA, et al. Comparative analysis of the human saliva microbiome from different climate zones: Alaska, Germany, and Africa. BMC Microbiol 2014; 14: 316.
    • (2014) BMC Microbiol , vol.14 , pp. 316
    • Li, J.1    Quinque, D.2    Horz, H.P.3    Li, M.4    Rzhetskaya, M.5    Raff, J.A.6
  • 15
    • 84878708884 scopus 로고    scopus 로고
    • Pyrosequencing analysis of the human microbiota of healthy Chinese undergraduates
    • Ling Z, Liu X, Luo Y, Yuan L, Nelson KE, Wang Y, et al. Pyrosequencing analysis of the human microbiota of healthy Chinese undergraduates. BMC Genomics 2013; 14: 390.
    • (2013) BMC Genomics , vol.14 , pp. 390
    • Ling, Z.1    Liu, X.2    Luo, Y.3    Yuan, L.4    Nelson, K.E.5    Wang, Y.6
  • 16
  • 18
    • 84886019355 scopus 로고    scopus 로고
    • Deep sequencing identifies ethnicity-specific bacterial signatures in the oral microbiome
    • Mason MR, Nagaraja HN, Camerlengo T, Joshi V, Kumar PS. Deep sequencing identifies ethnicity-specific bacterial signatures in the oral microbiome. PLoS One 2013; 8: e77287.
    • (2013) PLoS One , vol.8
    • Mason, M.R.1    Nagaraja, H.N.2    Camerlengo, T.3    Joshi, V.4    Kumar, P.S.5
  • 19
    • 79958196766 scopus 로고    scopus 로고
    • Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis
    • Schloss PD, Westcott SL. Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis. Appl Environ Microbiol 2011; 77: 3219-26.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 3219-3226
    • Schloss, P.D.1    Westcott, S.L.2
  • 20
    • 82555183004 scopus 로고    scopus 로고
    • The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information
    • Chen T, Yu WH, Izard J, Baranova OV, Lakshmanan A, Dewhirst FE. The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information. Database (Oxford) 2010; 2010: baq013.
    • (2010) Database (Oxford) , vol.2010
    • Chen, T.1    Yu, W.H.2    Izard, J.3    Baranova, O.V.4    Lakshmanan, A.5    Dewhirst, F.E.6
  • 21
    • 84876842615 scopus 로고    scopus 로고
    • The subgingival microbiome in health and periodontitis and its relationship with community biomass and inflammation
    • Abusleme L, Dupuy AK, Dutzan N, Silva N, Burleson JA, Strausbaugh LD, et al. The subgingival microbiome in health and periodontitis and its relationship with community biomass and inflammation. ISME J 2013; 7: 1016-25.
    • (2013) ISME J , vol.7 , pp. 1016-1025
    • Abusleme, L.1    Dupuy, A.K.2    Dutzan, N.3    Silva, N.4    Burleson, J.A.5    Strausbaugh, L.D.6
  • 22
    • 84881534314 scopus 로고    scopus 로고
    • Bacterial community development in experimental gingivitis
    • Kistler JO, Booth V, Bradshaw DJ, Wade WG. Bacterial community development in experimental gingivitis. PLoS One 2013; 8: e71227.
    • (2013) PLoS One , vol.8
    • Kistler, J.O.1    Booth, V.2    Bradshaw, D.J.3    Wade, W.G.4
  • 23
    • 84948141518 scopus 로고    scopus 로고
    • Robust species taxonomy assignment algorithm for 16S rRNA NGS reads: application to oral carcinoma samples
    • Al-Hebshi NN, Nasher AT, Idris AM, Chen T. Robust species taxonomy assignment algorithm for 16S rRNA NGS reads: application to oral carcinoma samples. J Oral Microbiol 2015; 7: 28934.
    • (2015) J Oral Microbiol , vol.7 , pp. 28934
    • Al-Hebshi, N.N.1    Nasher, A.T.2    Idris, A.M.3    Chen, T.4
  • 26
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: open-source, platformindependent, community-supported software for describing and comparing microbial communities
    • Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, et al. Introducing mothur: open-source, platformindependent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 2009; 75: 7537-41.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3    Hall, J.R.4    Hartmann, M.5    Hollister, E.B.6
  • 28
    • 79952006773 scopus 로고    scopus 로고
    • Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
    • Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G, et al. Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res 2011; 21: 494-504.
    • (2011) Genome Res , vol.21 , pp. 494-504
    • Haas, B.J.1    Gevers, D.2    Earl, A.M.3    Feldgarden, M.4    Ward, D.V.5    Giannoukos, G.6
  • 29
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q, Garrity GM, Tiedje JM, Cole JR. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 2007; 73: 5261-7.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 32
    • 84898540753 scopus 로고    scopus 로고
    • Pyrosequencing analysis of oral microbiota shifting in various caries states in childhood
    • Jiang W, Ling Z, Lin X, Chen Y, Zhang J, Yu J, et al. Pyrosequencing analysis of oral microbiota shifting in various caries states in childhood. Microb Ecol 2014; 67: 962-9.
    • (2014) Microb Ecol , vol.67 , pp. 962-969
    • Jiang, W.1    Ling, Z.2    Lin, X.3    Chen, Y.4    Zhang, J.5    Yu, J.6
  • 34
    • 12244254440 scopus 로고    scopus 로고
    • Diversity of bacterial populations on the tongue dorsa of patients with halitosis and healthy patients
    • Kazor CE, Mitchell PM, Lee AM, Stokes LN, Loesche WJ, Dewhirst FE, et al. Diversity of bacterial populations on the tongue dorsa of patients with halitosis and healthy patients. J Clin Microbiol 2003; 41: 558-63.
    • (2003) J Clin Microbiol , vol.41 , pp. 558-563
    • Kazor, C.E.1    Mitchell, P.M.2    Lee, A.M.3    Stokes, L.N.4    Loesche, W.J.5    Dewhirst, F.E.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.