-
1
-
-
77957329119
-
Isoprenoid pathway optimization for taxol precursor overproduction in Escherichia coli
-
Ajikumar, P. K., Xiao, W. H., Tyo, K. E., Wang, Y., Simeon, F., Leonard, E., et al. (2010). Isoprenoid pathway optimization for taxol precursor overproduction in Escherichia coli. Science 330, 70-74. doi: 10.1126/science.1191652
-
(2010)
Science
, vol.330
, pp. 70-74
-
-
Ajikumar, P.K.1
Xiao, W.H.2
Tyo, K.E.3
Wang, Y.4
Simeon, F.5
Leonard, E.6
-
2
-
-
24644515752
-
Tuning genetic control through promoter engineering
-
Alper, H., Fischer, C., Nevoigt, E., and Stephanopoulos, G. (2005). Tuning genetic control through promoter engineering. Proc. Natl. Acad. Sci. U.S.A. 102, 12678-12683. doi:10.1073/pnas.0504604102
-
(2005)
Proc. Natl. Acad. Sci. U.S.A
, vol.102
, pp. 12678-12683
-
-
Alper, H.1
Fischer, C.2
Nevoigt, E.3
Stephanopoulos, G.4
-
3
-
-
49349089594
-
Effects of gene orientation and use of multiple promoters on the expression of XYL1 and XYL2 in Saccharomyces cerevisiae
-
Bae, J. Y., Laplaza, J., and Jeffries, T. W. (2008). Effects of gene orientation and use of multiple promoters on the expression of XYL1 and XYL2 in Saccharomyces cerevisiae. Appl. Biochem. Biotechnol. 145, 69-78. doi:10.1007/s12010-007-8076-0
-
(2008)
Appl. Biochem. Biotechnol
, vol.145
, pp. 69-78
-
-
Bae, J.Y.1
Laplaza, J.2
Jeffries, T.W.3
-
4
-
-
84871770439
-
Promoter engineering: recent advances in controlling transcription at the most fundamental level
-
Blazeck, J., and Alper, H. S. (2013). Promoter engineering: recent advances in controlling transcription at the most fundamental level. Biotechnol. J. 8, 46-58. doi:10.1002/biot.201200120
-
(2013)
Biotechnol. J
, vol.8
, pp. 46-58
-
-
Blazeck, J.1
Alper, H.S.2
-
5
-
-
0026512939
-
Multifunctional yeast high-copy-number shuttle vectors
-
Christianson, T. W., Sikorski, R. S., Dante, M., Shero, J. H., and Hieter, P. (1992). Multifunctional yeast high-copy-number shuttle vectors. Gene 110, 119-122. doi:10.1016/0378-1119(92)90454-W
-
(1992)
Gene
, vol.110
, pp. 119-122
-
-
Christianson, T.W.1
Sikorski, R.S.2
Dante, M.3
Shero, J.H.4
Hieter, P.5
-
6
-
-
84881004490
-
Use of expression-enhancing terminators in Saccharomyces cerevisiae to increase mRNA half-life and improve gene expression control for metabolic engineering applications
-
Curran, K. A., Karim, A. S., Gupta, A., and Alper, H. S. (2013). Use of expression-enhancing terminators in Saccharomyces cerevisiae to increase mRNA half-life and improve gene expression control for metabolic engineering applications. Metab. Eng. 19, 88-97. doi:10.1016/j.ymben.2013.07.001
-
(2013)
Metab. Eng
, vol.19
, pp. 88-97
-
-
Curran, K.A.1
Karim, A.S.2
Gupta, A.3
Alper, H.S.4
-
7
-
-
84857053335
-
Introduction and expression of genes for metabolic engineering applications in Saccharomyces cerevisiae
-
Da Silva, N. A., and Srikrishnan, S. (2012). Introduction and expression of genes for metabolic engineering applications in Saccharomyces cerevisiae. FEMS Yeast Res. 12, 197-214. doi:10.1111/j.1567-1364.2011.00769.x
-
(2012)
FEMS Yeast Res
, vol.12
, pp. 197-214
-
-
Da Silva, N.A.1
Srikrishnan, S.2
-
8
-
-
0030772492
-
Effects of overproduction of the catalytic domain of 3-hydroxy-3-methylglutaryl coenzyme A reductase on squalene synthesis in Saccharomyces cerevisiae
-
Donald, K. A., Hampton, R. Y., and Fritz, I. B. (1997). Effects of overproduction of the catalytic domain of 3-hydroxy-3-methylglutaryl coenzyme A reductase on squalene synthesis in Saccharomyces cerevisiae. Appl. Environ. Microbiol. 63, 3341-3344.
-
(1997)
Appl. Environ. Microbiol
, vol.63
, pp. 3341-3344
-
-
Donald, K.A.1
Hampton, R.Y.2
Fritz, I.B.3
-
9
-
-
84865278051
-
Customized optimization of metabolic pathways by combinatorial transcriptional engineering
-
Du, J., Yuan, Y., Si, T., Lian, J., and Zhao, H. (2012). Customized optimization of metabolic pathways by combinatorial transcriptional engineering. Nucleic Acids Res. 40, e142. doi:10.1093/nar/gks549
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Du, J.1
Yuan, Y.2
Si, T.3
Lian, J.4
Zhao, H.5
-
10
-
-
0029894792
-
The yeast genome project: what did we learn?
-
Dujon, B. (1996). The yeast genome project: what did we learn? Trends Genet. 12, 263-270. doi:10.1016/0168-9525(96)10027-5
-
(1996)
Trends Genet
, vol.12
, pp. 263-270
-
-
Dujon, B.1
-
11
-
-
78751528914
-
A vector set for systematic metabolic engineering in Saccharomyces cerevisiae
-
Fang, F., Salmon, K., Shen, M. W., Aeling, K. A., Ito, E., Irwin, B., et al. (2011). A vector set for systematic metabolic engineering in Saccharomyces cerevisiae. Yeast 28, 123-136. doi:10.1002/yea.1824
-
(2011)
Yeast
, vol.28
, pp. 123-136
-
-
Fang, F.1
Salmon, K.2
Shen, M.W.3
Aeling, K.A.4
Ito, E.5
Irwin, B.6
-
12
-
-
78649701863
-
Transcriptional regulation in yeast during diauxic shift and stationary phase
-
Galdieri, L., Mehrotra, S., Yu, S., and Vancura, A. (2010). Transcriptional regulation in yeast during diauxic shift and stationary phase. OMICS 14, 629-638. doi:10.1089/omi.2010.0069
-
(2010)
OMICS
, vol.14
, pp. 629-638
-
-
Galdieri, L.1
Mehrotra, S.2
Yu, S.3
Vancura, A.4
-
13
-
-
0030798070
-
A set of vectors with a tetracycline-regulatable promoter system for modulated gene expression in Saccharomyces cerevisiae
-
Gari, E., Piedrafita, L., Aldea, M., and Herrero, E. (1997). A set of vectors with a tetracycline-regulatable promoter system for modulated gene expression in Saccharomyces cerevisiae. Yeast 13, 837-848. doi:10.1002/(SICI)1097-0061(199707)13:9<837::AID-YEA145>3.0.CO;2-T
-
(1997)
Yeast
, vol.13
, pp. 837-848
-
-
Gari, E.1
Piedrafita, L.2
Aldea, M.3
Herrero, E.4
-
14
-
-
67349270900
-
Enzymatic assembly of DNA molecules up to several hundred kilobases
-
Gibson, D. G., Young, L., Chuang, R. Y., Venter, J. C., Hutchison, C. A. III, and Smith, H. O. (2009). Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat. Methods 6, 343-345. doi:10.1038/nmeth.1318
-
(2009)
Nat. Methods
, vol.6
, pp. 343-345
-
-
Gibson, D.G.1
Young, L.2
Chuang, R.Y.3
Venter, J.C.4
Hutchison, C.A.5
Smith, H.O.6
-
15
-
-
0026562884
-
Improved method for high efficiency transformation of intact yeast cells
-
Gietz, D., St Jean, A., Woods, R. A., and Schiestl, R. H. (1992). Improved method for high efficiency transformation of intact yeast cells. Nucleic Acids Res. 20, 1425. doi:10.1093/nar/20.6.1425
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 1425
-
-
Gietz, D.1
St Jean, A.2
Woods, R.A.3
Schiestl, R.H.4
-
16
-
-
0028801765
-
Metabolic load and heterologous gene expression
-
Glick, B. R. (1995). Metabolic load and heterologous gene expression. Biotechnol. Adv. 13, 247-261. doi:10.1016/0734-9750(95)00004-A
-
(1995)
Biotechnol. Adv
, vol.13
, pp. 247-261
-
-
Glick, B.R.1
-
17
-
-
43449107937
-
Strict regulation of gene expression from a high-copy plasmid utilizing a dual vector system
-
Gruber, D. F., Pieribone, V. A., Porton, B., and Kao, H. T. (2008). Strict regulation of gene expression from a high-copy plasmid utilizing a dual vector system. Protein Expr. Purif. 60, 53-57. doi:10.1016/j.pep.2008.03.014
-
(2008)
Protein Expr. Purif
, vol.60
, pp. 53-57
-
-
Gruber, D.F.1
Pieribone, V.A.2
Porton, B.3
Kao, H.T.4
-
18
-
-
84872415347
-
Characterization of plasmid burden and copy number in Saccharomyces cerevisiae for optimization of metabolic engineering applications
-
Karim, A. S., Curran, K. A., and Alper, H. S. (2013). Characterization of plasmid burden and copy number in Saccharomyces cerevisiae for optimization of metabolic engineering applications. FEMS Yeast Res. 13, 107-116. doi:10.1111/1567-1364.12016
-
(2013)
FEMS Yeast Res
, vol.13
, pp. 107-116
-
-
Karim, A.S.1
Curran, K.A.2
Alper, H.S.3
-
19
-
-
84882637876
-
Combinatorial genetic perturbation to refine metabolic circuits for producing biofuels and biochemicals
-
Kim, H. J., Turner, T. L., and Jin, Y. S. (2013). Combinatorial genetic perturbation to refine metabolic circuits for producing biofuels and biochemicals. Biotechnol. Adv. 31, 976-985. doi:10.1016/j.biotechadv.2013.03.010
-
(2013)
Biotechnol. Adv
, vol.31
, pp. 976-985
-
-
Kim, H.J.1
Turner, T.L.2
Jin, Y.S.3
-
20
-
-
84871139004
-
Engineering of acetyl-CoA metabolism for the improved production of polyhydroxybutyrate in Saccharomyces cerevisiae
-
Kocharin, K., Chen, Y., Siewers, V., and Nielsen, J. (2012). Engineering of acetyl-CoA metabolism for the improved production of polyhydroxybutyrate in Saccharomyces cerevisiae. AMB Express. 2, 52. doi:10.1186/2191-0855-2-52
-
(2012)
AMB Express
, vol.2
, pp. 52
-
-
Kocharin, K.1
Chen, Y.2
Siewers, V.3
Nielsen, J.4
-
21
-
-
84890395226
-
Expression-level optimization of a multi-enzyme pathway in the absence of a high-throughput assay
-
Lee, M. E., Aswani, A., Han, A. S., Tomlin, C. J., and Dueber, J. E. (2013). Expression-level optimization of a multi-enzyme pathway in the absence of a high-throughput assay. Nucleic Acids Res. 41, 10668-10678. doi:10.1093/nar/gkt809
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 10668-10678
-
-
Lee, M.E.1
Aswani, A.2
Han, A.S.3
Tomlin, C.J.4
Dueber, J.E.5
-
22
-
-
84892778854
-
Suppression of expression between adjacent genes within heterologous modules in yeast
-
Lee, T. J., Parikh, R. Y., Weitz, J. S., and Kim, H. D. (2014). Suppression of expression between adjacent genes within heterologous modules in yeast. G3 (Bethesda) 4, 109-116. doi:10.1534/g3.113.007922
-
(2014)
G3 (Bethesda)
, vol.4
, pp. 109-116
-
-
Lee, T.J.1
Parikh, R.Y.2
Weitz, J.S.3
Kim, H.D.4
-
23
-
-
0023433855
-
Supercoiling of the DNA template during transcription
-
Liu, L. F., and Wang, J. C. (1987). Supercoiling of the DNA template during transcription. Proc. Natl. Acad. Sci. U.S.A. 84, 7024-7027. doi:10.1073/pnas.84.20.7024
-
(1987)
Proc. Natl. Acad. Sci. U.S.A
, vol.84
, pp. 7024-7027
-
-
Liu, L.F.1
Wang, J.C.2
-
24
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method
-
Livak, K. J., and Schmittgen, T. D. (2001). Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods 25, 402-408. doi:10.1006/meth.2001.1262
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
25
-
-
35148890697
-
Shuffling of promoters for multiple genes to optimize xylose fermentation in an engineered Saccharomyces cerevisiae strain
-
Lu, C., and Jeffries, T. (2007). Shuffling of promoters for multiple genes to optimize xylose fermentation in an engineered Saccharomyces cerevisiae strain. Appl. Environ. Microbiol. 73, 6072-6077. doi:10.1128/AEM.00955-07
-
(2007)
Appl. Environ. Microbiol
, vol.73
, pp. 6072-6077
-
-
Lu, C.1
Jeffries, T.2
-
26
-
-
3142536716
-
Exploration of essential gene functions via titratable promoter alleles
-
Mnaimneh, S., Davierwala, A. P., Haynes, J., Moffat, J., Peng, W. T., Zhang, W., et al. (2004). Exploration of essential gene functions via titratable promoter alleles. Cell 118, 31-44. doi:10.1016/j.cell.2004.06.013
-
(2004)
Cell
, vol.118
, pp. 31-44
-
-
Mnaimneh, S.1
Davierwala, A.P.2
Haynes, J.3
Moffat, J.4
Peng, W.T.5
Zhang, W.6
-
27
-
-
0037677435
-
Metabolic load of recombinant protein production: inhibition of cellular capacities for glucose uptake and respiration after induction of a heterologous gene in Escherichia coli
-
Neubauer, P., Lin, H. Y., and Mathiszik, B. (2003). Metabolic load of recombinant protein production: inhibition of cellular capacities for glucose uptake and respiration after induction of a heterologous gene in Escherichia coli. Biotechnol. Bioeng. 83, 53-64. doi:10.1002/bit.10645
-
(2003)
Biotechnol. Bioeng
, vol.83
, pp. 53-64
-
-
Neubauer, P.1
Lin, H.Y.2
Mathiszik, B.3
-
28
-
-
78149328427
-
Characterization of different promoters for designing a new expression vector in Saccharomyces cerevisiae
-
Partow, S., Siewers, V., Bjorn, S., Nielsen, J., and Maury, J. (2010). Characterization of different promoters for designing a new expression vector in Saccharomyces cerevisiae. Yeast 27, 955-964. doi:10.1002/yea.1806
-
(2010)
Yeast
, vol.27
, pp. 955-964
-
-
Partow, S.1
Siewers, V.2
Bjorn, S.3
Nielsen, J.4
Maury, J.5
-
29
-
-
0033563512
-
The biology of eukaryotic promoter prediction-a review
-
Pedersen, A. G., Baldi, P., Chauvin, Y., and Brunak, S. (1999). The biology of eukaryotic promoter prediction-a review. Comput. Chem. 23, 191-207. doi:10.1016/S0097-8485(99)00015-7
-
(1999)
Comput. Chem
, vol.23
, pp. 191-207
-
-
Pedersen, A.G.1
Baldi, P.2
Chauvin, Y.3
Brunak, S.4
-
30
-
-
0037173089
-
Transcriptional collision between convergent genes in budding yeast
-
Prescott, E. M., and Proudfoot, N. J. (2002). Transcriptional collision between convergent genes in budding yeast. Proc. Natl. Acad. Sci. U.S.A. 99, 8796-8801. doi:10.1073/pnas.132270899
-
(2002)
Proc. Natl. Acad. Sci. U.S.A
, vol.99
, pp. 8796-8801
-
-
Prescott, E.M.1
Proudfoot, N.J.2
-
31
-
-
79951773902
-
Single-step linker-based combinatorial assembly of promoter and gene cassettes for pathway engineering
-
Ramon, A., and Smith, H. O. (2011). Single-step linker-based combinatorial assembly of promoter and gene cassettes for pathway engineering. Biotechnol. Lett. 33, 549-555. doi:10.1007/s10529-010-0455-x
-
(2011)
Biotechnol. Lett
, vol.33
, pp. 549-555
-
-
Ramon, A.1
Smith, H.O.2
-
32
-
-
33645870422
-
Production of the antimalarial drug precursor artemisinic acid in engineered yeast
-
Ro, D. K., Paradise, E. M., Ouellet, M., Fisher, K. J., Newman, K. L., Ndungu, J. M., et al. (2006). Production of the antimalarial drug precursor artemisinic acid in engineered yeast. Nature 440, 940-943. doi:10.1038/nature04640
-
(2006)
Nature
, vol.440
, pp. 940-943
-
-
Ro, D.K.1
Paradise, E.M.2
Ouellet, M.3
Fisher, K.J.4
Newman, K.L.5
Ndungu, J.M.6
-
33
-
-
0026778048
-
Foreign gene expression in yeast: a review
-
Romanos, M. A., Scorer, C. A., and Clare, J. J. (1992). Foreign gene expression in yeast: a review. Yeast 8, 423-488. doi:10.1002/yea.320080602
-
(1992)
Yeast
, vol.8
, pp. 423-488
-
-
Romanos, M.A.1
Scorer, C.A.2
Clare, J.J.3
-
34
-
-
19444377759
-
Transcriptional interference-a crash course
-
Shearwin, K. E., Callen, B. P., and Egan, J. B. (2005). Transcriptional interference-a crash course. Trends Genet. 21, 339-345. doi:10.1016/j.tig.2005.04.009
-
(2005)
Trends Genet
, vol.21
, pp. 339-345
-
-
Shearwin, K.E.1
Callen, B.P.2
Egan, J.B.3
-
35
-
-
0030759410
-
Gene expression from plasmids containing the araBAD promoter at subsaturating inducer concentrations represents mixed populations
-
Siegele, D. A., and Hu, J. C. (1997). Gene expression from plasmids containing the araBAD promoter at subsaturating inducer concentrations represents mixed populations. Proc. Natl. Acad. Sci. U.S.A. 94, 8168-8172. doi:10.1073/pnas.94.15.8168
-
(1997)
Proc. Natl. Acad. Sci. U.S.A
, vol.94
, pp. 8168-8172
-
-
Siegele, D.A.1
Hu, J.C.2
-
36
-
-
58249098522
-
Metabolic engineering of Saccharomyces cerevisiae for the production of n-butanol
-
Steen, E. J., Chan, R., Prasad, N., Myers, S., Petzold, C. J., Redding, A., et al. (2008). Metabolic engineering of Saccharomyces cerevisiae for the production of n-butanol. Microb. Cell Fact. 7, 36. doi:10.1186/1475-2859-7-36
-
(2008)
Microb. Cell Fact
, vol.7
, pp. 36
-
-
Steen, E.J.1
Chan, R.2
Prasad, N.3
Myers, S.4
Petzold, C.J.5
Redding, A.6
-
37
-
-
84862817382
-
Cloning and characterization of a panel of constitutive promoters for applications in pathway engineering in Saccharomyces cerevisiae
-
Sun, J., Shao, Z., Zhao, H., Nair, N., Wen, F., Xu, J. H., et al. (2012). Cloning and characterization of a panel of constitutive promoters for applications in pathway engineering in Saccharomyces cerevisiae. Biotechnol. Bioeng. 109, 2082-2092. doi:10.1002/bit.24481
-
(2012)
Biotechnol. Bioeng
, vol.109
, pp. 2082-2092
-
-
Sun, J.1
Shao, Z.2
Zhao, H.3
Nair, N.4
Wen, F.5
Xu, J.H.6
-
38
-
-
70549086797
-
Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae
-
Teste, M. A., Duquenne, M., Francois, J. M., and Parrou, J. L. (2009). Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae. BMC Mol. Biol. 10:99. doi:10.1186/1471-2199-10-99
-
(2009)
BMC Mol. Biol
, vol.10
, pp. 99
-
-
Teste, M.A.1
Duquenne, M.2
Francois, J.M.3
Parrou, J.L.4
-
39
-
-
70449396286
-
Metabolic engineering of Saccharomyces cerevisiae for astaxanthin production and oxidative stress tolerance
-
Ukibe, K., Hashida, K., Yoshida, N., and Takagi, H. (2009). Metabolic engineering of Saccharomyces cerevisiae for astaxanthin production and oxidative stress tolerance. Appl. Environ. Microbiol. 75, 7205-7211. doi:10.1128/AEM.01249-09
-
(2009)
Appl. Environ. Microbiol
, vol.75
, pp. 7205-7211
-
-
Ukibe, K.1
Hashida, K.2
Yoshida, N.3
Takagi, H.4
-
40
-
-
34447543117
-
High-level production of beta-carotene in Saccharomyces cerevisiae by successive transformation with carotenogenic genes from Xanthophyllomyces dendrorhous
-
Verwaal, R., Wang, J., Meijnen, J. P., Visser, H., Sandmann, G., Van Den Berg, J. A., et al. (2007). High-level production of beta-carotene in Saccharomyces cerevisiae by successive transformation with carotenogenic genes from Xanthophyllomyces dendrorhous. Appl. Environ. Microbiol. 73, 4342-4350. doi:10.1128/AEM.02759-06
-
(2007)
Appl. Environ. Microbiol
, vol.73
, pp. 4342-4350
-
-
Verwaal, R.1
Wang, J.2
Meijnen, J.P.3
Visser, H.4
Sandmann, G.5
Van Den Berg, J.A.6
-
41
-
-
84896692153
-
3' Untranslated regions mediate transcriptional interference between convergent genes both locally and ectopically in Saccharomyces cerevisiae
-
Wang, L., Jiang, N., Wang, L., Fang, O., Leach, L. J., Hu, X., et al. (2014). 3' Untranslated regions mediate transcriptional interference between convergent genes both locally and ectopically in Saccharomyces cerevisiae. PLoS Genet. 10:e1004021. doi:10.1371/journal.pgen.1004021
-
(2014)
PLoS Genet
, vol.10
-
-
Wang, L.1
Jiang, N.2
Wang, L.3
Fang, O.4
Leach, L.J.5
Hu, X.6
-
42
-
-
84879762383
-
A genome-wide activity assessment of terminator regions in Saccharomyces cerevisiae provides a "terminatome" toolbox
-
Yamanishi, M., Ito, Y., Kintaka, R., Imamura, C., Katahira, S., Ikeuchi, A., et al. (2013). A genome-wide activity assessment of terminator regions in Saccharomyces cerevisiae provides a "terminatome" toolbox. ACS Synth. Biol. 2, 337-347. doi:10.1021/sb300116y
-
(2013)
ACS Synth. Biol
, vol.2
, pp. 337-347
-
-
Yamanishi, M.1
Ito, Y.2
Kintaka, R.3
Imamura, C.4
Katahira, S.5
Ikeuchi, A.6
-
43
-
-
84856972996
-
Enhancement of beta-carotene production by over-expression of HMG-CoA reductase coupled with addition of ergosterol biosynthesis inhibitors in recombinant Saccharomyces cerevisiae
-
Yan, G. L., Wen, K. R., and Duan, C. Q. (2012). Enhancement of beta-carotene production by over-expression of HMG-CoA reductase coupled with addition of ergosterol biosynthesis inhibitors in recombinant Saccharomyces cerevisiae. Curr. Microbiol. 64, 159-163. doi:10.1007/s00284-011-0044-9
-
(2012)
Curr. Microbiol
, vol.64
, pp. 159-163
-
-
Yan, G.L.1
Wen, K.R.2
Duan, C.Q.3
|