Prior Dietary Practices and Connections to a Human Gut Microbial Metacommunity Alter Responses to Diet Interventions

Cell Host and Microbe

Volumn 21, Issue 1, 2017, Pages 84-96

  Griffin, Nicholas W ^a   Ahern, Philip P ^a   Cheng, Jiye ^a   Heath, Andrew C ^a   Ilkayeva, Olga ^b,c   Newgard, Christopher B ^b,c   Fontana, Luigi ^a,d,e   Gordon, Jeffrey I ^a  

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b DUKE UNIVERSITY MEDICAL CENTER   (United States)

^c DUKE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^d UNIVERSITY OF BRESCIA   (Italy)

^e CEINGE BIOTECNOLOGIE AVANZATE   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BACTEROIDES FRAGILIS; BACTEROIDES THETAIOTAOMICRON; BACTEROIDETES; BODY WEIGHT; CALORIC RESTRICTION; CONTROLLED STUDY; DIET; DIET RESTRICTION; DIET THERAPY; DONOR; EXPOSURE; FECES MICROFLORA; GNOTOBIOTICS; HUMAN; INTESTINE FLORA; MALE; METABOLISM; MOUSE; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; ANIMAL; BACTERIUM; CLASSIFICATION; FECES; FEEDING BEHAVIOR; GASTROINTESTINAL TRACT; GENETICS; GERMFREE ANIMAL; MICROBIOLOGY;

ANIMALS; BACTERIA; CALORIC RESTRICTION; DIET; FECES; FEEDING BEHAVIOR; GASTROINTESTINAL MICROBIOME; GASTROINTESTINAL TRACT; GERM-FREE LIFE; HUMANS; MALE; MICE;

EID: 85009377539     PISSN: 19313128     EISSN: 19346069     Source Type: Journal    
DOI: 10.1016/j.chom.2016.12.006     Document Type: Article

References (24)

1. Bokulich, N.A., Ohta, M., Richardson, P.M., Mills, D.A., Monitoring seasonal changes in winery-resident microbiota. PLoS ONE, 8, 2013, e66437.
2. Bokulich, N.A., Chung, J., Battaglia, T., Henderson, N., Jay, M., Li, H., D Lieber, A., Wu, F., Perez-Perez, G.I., Chen, Y., et al. Antibiotics, birth mode, and diet shape microbiome maturation during early life. Sci. Transl. Med., 8, 2016, 343ra82.
3. Clements, R.S. Jr., Darnell, B., Myo-inositol content of common foods: development of a high-myo-inositol diet. Am. J. Clin. Nutr. 33 (1980), 1954–1967.
4. Cotillard, A., Kennedy, S.P., Kong, L.C., Prifti, E., Pons, N., Le Chatelier, E., Almeida, M., Quinquis, B., Levenez, F., Galleron, N., et al., ANR MicroObes consortium. Dietary intervention impact on gut microbial gene richness. Nature 500 (2013), 585–588.
5. David, L.A., Maurice, C.F., Carmody, R.N., Gootenberg, D.B., Button, J.E., Wolfe, B.E., Ling, A.V., Devlin, A.S., Varma, Y., Fischbach, M.A., et al. Diet rapidly and reproducibly alters the human gut microbiome. Nature 505 (2014), 559–563.
6. Dufrêne, M., Legendre, P., Species assemblages and indicator species: the need for a flexible asymmetrical approach. Ecol. Monogr. 67 (1997), 345–366.
7. Falony, G., Joossens, M., Vieira-Silva, S., Wang, J., Darzi, Y., Faust, K., Kurilshikov, A., Bonder, M.J., Valles-Colomer, M., Vandeputte, D., et al. Population-level analysis of gut microbiome variation. Science 352 (2016), 560–564.
8. Fontana, L., Partridge, L., Promoting health and longevity through diet: from model organisms to humans. Cell 161 (2015), 106–118.
9. Fontana, L., Meyer, T.E., Klein, S., Holloszy, J.O., Long-term calorie restriction is highly effective in reducing the risk for atherosclerosis in humans. Proc. Natl. Acad. Sci. USA 101 (2004), 6659–6663.
10. Le Chatelier, E., Nielsen, T., Qin, J., Prifti, E., Hildebrand, F., Falony, G., Almeida, M., Arumugam, M., Batto, J.M., Kennedy, S., et al., MetaHIT consortium. Richness of human gut microbiome correlates with metabolic markers. Nature 500 (2013), 541–546.
11. Martínez, I., Lattimer, J.M., Hubach, K.L., Case, J.A., Yang, J., Weber, C.G., Louk, J.A., Rose, D.J., Kyureghian, G., Peterson, D.A., et al. Gut microbiome composition is linked to whole grain-induced immunological improvements. ISME J. 7 (2013), 269–280.
12. Martínez, I., Stegen, J.C., Maldonado-Gómez, M.X., Eren, A.M., Siba, P.M., Greenhill, A.R., Walter, J., The gut microbiota of rural Papua New Guineans: composition, diversity patterns, and ecological processes. Cell Rep. 11 (2015), 527–538.
13. Meadow, J.F., Altrichter, A.E., Bateman, A.C., Stenson, J., Brown, G.Z., Green, J.L., Bohannan, B.J.M., Humans differ in their personal microbial cloud. PeerJ, 3, 2015, e1258.
14. Muegge, B.D., Kuczynski, J., Knights, D., Clemente, J.C., González, A., Fontana, L., Henrissat, B., Knight, R., Gordon, J.I., Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science 332 (2011), 970–974.
15. Ridaura, V.K., Faith, J.J., Rey, F.E., Cheng, J., Duncan, A.E., Kau, A.L., Griffin, N.W., Lombard, V., Henrissat, B., Bain, J.R., et al. Gut microbiota from twins discordant for obesity modulate metabolism in mice. Science, 341, 2013, 1241214.
16. Seedorf, H., Griffin, N.W., Ridaura, V.K., Reyes, A., Cheng, J., Rey, F.E., Smith, M.I., Simon, G.M., Scheffrahn, R.H., Woebken, D., et al. Bacteria from diverse habitats colonize and compete in the mouse gut. Cell 159 (2014), 253–266.
17. Song, S.J., Lauber, C., Costello, E.K., Lozupone, C.A., Humphrey, G., Berg-Lyons, D., Caporaso, J.G., Knights, D., Clemente, J.C., Nakielny, S., et al. Cohabiting family members share microbiota with one another and with their dogs. eLife, 2, 2013, e00458.
18. Sonnenburg, E.D., Smits, S.A., Tikhonov, M., Higginbottom, S.K., Wingreen, N.S., Sonnenburg, J.L., Diet-induced extinctions in the gut microbiota compound over generations. Nature 529 (2016), 212–215.
19. Stefka, A.T., Feehley, T., Tripathi, P., Qiu, J., McCoy, K., Mazmanian, S.K., Tjota, M.Y., Seo, G.Y., Cao, S., Theriault, B.R., et al. Commensal bacteria protect against food allergen sensitization. Proc. Natl. Acad. Sci. USA 111 (2014), 13145–13150.
20. Turnbaugh, P.J., Hamady, M., Yatsunenko, T., Cantarel, B.L., Duncan, A., Ley, R.E., Sogin, M.L., Jones, W.J., Roe, B.A., Affourtit, J.P., et al. A core gut microbiome in obese and lean twins. Nature 457 (2009), 480–484.
21. Zeevi, D., Korem, T., Zmora, N., Israeli, D., Rothschild, D., Weinberger, A., Ben-Yacov, O., Lador, D., Avnit-Sagi, T., Lotan-Pompan, M., et al. Personalized nutrition by prediction of glycemic responses. Cell 163 (2015), 1079–1094.
22. Zhang, C., Li, S., Yang, L., Huang, P., Li, W., Wang, S., Zhao, G., Zhang, M., Pang, X., Yan, Z., et al. Structural modulation of gut microbiota in life-long calorie-restricted mice. Nat. Commun., 4, 2013, 2163.
23. Zhernakova, A., Kurilshikov, A., Bonder, M.J., Tigchelaar, E.F., Schirmer, M., Vatanen, T., Mujagic, Z., Vila, A.V., Falony, G., Vieira-Silva, S., et al., LifeLines cohort study. Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity. Science 352 (2016), 565–569.
24. Zhu, W., Gregory, J.C., Org, E., Buffa, J.A., Gupta, N., Wang, Z., Li, L., Fu, X., Wu, Y., Mehrabian, M., et al. Gut microbial metabolite TMAO enhances platelet hyperreactivity and thrombosis risk. Cell 165 (2016), 111–124.