-
1
-
-
84899438176
-
Colorectal cancer statistics, 2014
-
Siegel R, DeSantis C, Jemal A. 2014. Colorectal cancer statistics, 2014. CA Cancer J Clin 64:104-117. http://dx.doi.org/10.3322/caac.21220.
-
(2014)
CA Cancer J Clin
, vol.64
, pp. 104-117
-
-
Siegel, R.1
DeSantis, C.2
Jemal, A.3
-
2
-
-
84905730761
-
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
-
Nielsen HB, Almeida M, Juncker AS, Rasmussen S, Li J, Sunagawa S, Plichta DR, Gautier L, Pedersen AG, Le Chatelier E, Pelletier E, Bonde I, Nielsen T, Manichanh C, Arumugam M, Batto J-M, Quintanilha Dos Santos MB, Blom N, Borruel N, Burgdorf KS, Boumezbeur F, Casellas F, Doré J, Dworzynski P, Guarner F, Hansen T, Hildebrand F, Kaas RS, Kennedy S, Kristiansen K, Kultima JR, Léonard P, Levenez F, Lund O, Moumen B, Le Paslier D, Pons N, Pedersen O, Prifti E, Qin J, Raes J, Sørensen S, Tap J, Tims S, Ussery DW, Yamada T, Renault P, Sicheritz-Ponten T, Bork P, Wang J, Brunak S, Ehrlich SD. 2014. Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. Nat Biotechnol 32:822-828. http://dx.doi.org/10.1038/nbt.2939.
-
(2014)
Nat Biotechnol
, vol.32
, pp. 822-828
-
-
Nielsen, H.B.1
Almeida, M.2
Juncker, A.S.3
Rasmussen, S.4
Li, J.5
Sunagawa, S.6
Plichta, D.R.7
Gautier, L.8
Pedersen, A.G.9
Le Chatelier, E.10
Pelletier, E.11
Bonde, I.12
Nielsen, T.13
Manichanh, C.14
Arumugam, M.15
Batto, J.-M.16
Quintanilha Dos Santos, M.B.17
Blom, N.18
Borruel, N.19
Burgdorf, K.S.20
Boumezbeur, F.21
Casellas, F.22
Doré, J.23
Dworzynski, P.24
Guarner, F.25
Hansen, T.26
Hildebrand, F.27
Kaas, R.S.28
Kennedy, S.29
Kristiansen, K.30
Kultima, J.R.31
Léonard, P.32
Levenez, F.33
Lund, O.34
Moumen, B.35
Le Paslier, D.36
Pons, N.37
Pedersen, O.38
Prifti, E.39
Qin, J.40
Raes, J.41
Sørensen, S.42
Tap, J.43
Tims, S.44
Ussery, D.W.45
Yamada, T.46
Renault, P.47
Sicheritz-Ponten, T.48
Bork, P.49
Wang, J.50
Brunak, S.51
Ehrlich, S.D.52
more..
-
3
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760. http://dx.doi.org/10.1093/bioinformatics/btp324.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
4
-
-
84860771820
-
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
-
Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 19:455-477. http://dx.doi.org/10.1089/cmb.2012.0021.
-
(2012)
J Comput Biol
, vol.19
, pp. 455-477
-
-
Bankevich, A.1
Nurk, S.2
Antipov, D.3
Gurevich, A.A.4
Dvorkin, M.5
Kulikov, A.S.6
Lesin, V.M.7
Nikolenko, S.I.8
Pham, S.9
Prjibelski, A.D.10
Pyshkin, A.V.11
Sirotkin, A.V.12
Vyahhi, N.13
Tesler, G.14
Alekseyev, M.A.15
Pevzner, P.A.16
-
5
-
-
84925552713
-
BioBloom tools: fast, accurate and memory-efficient host species sequence screening using Bloom filters
-
Chu J, Sadeghi S, Raymond A, Jackman SD, Nip KM, Mar R, Mohamadi H, Butterfield YS, Robertson AG, Birol I. 2014. BioBloom tools: fast, accurate and memory-efficient host species sequence screening using Bloom filters. Bioinformatics 30:3402-3404. http://dx.doi.org/10.1093/bioinformatics/btu558.
-
(2014)
Bioinformatics
, vol.30
, pp. 3402-3404
-
-
Chu, J.1
Sadeghi, S.2
Raymond, A.3
Jackman, S.D.4
Nip, K.M.5
Mar, R.6
Mohamadi, H.7
Butterfield, Y.S.8
Robertson, A.G.9
Birol, I.10
-
6
-
-
84871396799
-
Ray Meta: scalable de novo metagenome assembly and profiling
-
Boisvert S, Raymond F, Godzaridis E, Laviolette F, Corbeil J. 2012. Ray Meta: scalable de novo metagenome assembly and profiling. Genome Biol 13:R122. http://dx.doi.org/10.1186/gb-2012-13-12-r122.
-
(2012)
Genome Biol
, vol.13
, pp. R122
-
-
Boisvert, S.1
Raymond, F.2
Godzaridis, E.3
Laviolette, F.4
Corbeil, J.5
-
7
-
-
84879678051
-
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
-
Albertsen M, Hugenholtz P, Skarshewski A, Nielsen KL, Tyson GW, Nielsen PH. 2013. Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes. Nat Biotechnol 31:533-538. http://dx.doi.org/10.1038/nbt.2579.
-
(2013)
Nat Biotechnol
, vol.31
, pp. 533-538
-
-
Albertsen, M.1
Hugenholtz, P.2
Skarshewski, A.3
Nielsen, K.L.4
Tyson, G.W.5
Nielsen, P.H.6
-
8
-
-
84876732832
-
Phylogeny of bacterial and archaeal genomes using conserved genes: supertrees and supermatrices
-
Lang JM, Darling AE, Eisen JA. 2013. Phylogeny of bacterial and archaeal genomes using conserved genes: supertrees and supermatrices. PLoS One 8:e62510. http://dx.doi.org/10.1371/journal.pone.0062510.
-
(2013)
PLoS One
, vol.8
-
-
Lang, J.M.1
Darling, A.E.2
Eisen, J.A.3
-
9
-
-
84926495796
-
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
-
Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, Tyson GW. 2014. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. PeerJ Preprints 2:e554v1. http://dx.doi.org/10.7287/peerj.preprints.554v1.
-
(2014)
PeerJ Preprints
, vol.2
-
-
Parks, D.H.1
Imelfort, M.2
Skennerton, C.T.3
Hugenholtz, P.4
Tyson, G.W.5
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