Fast detection of Southern tomato virus by one-step transcription loop-mediated isothermal amplification (RT-LAMP)

Journal of Virological Methods

Volumn 241, Issue , 2017, Pages 11-14

  Elvira Gonzalez L ^a   Puchades, A V ^a   Carpino, C ^a,b   Alfaro Fernandez, A ^c   Font San Ambrosio, M I ^c   Rubio, L ^a,d   Galipienso, L ^a,c,d  

^a INSTITUTO VALENCIANO DE INVESTIGACIONES AGRARIAS IVIA   (Spain)

^b UNIVERSITY OF PALERMO   (Italy)

^c UNIVERSITAT POLITÈCNICA DE VALÈNCIA   (Spain)

^d Euro Mediterranean Institute of Science and Technology   (Italy)

Author keywords

Amalgamaviru; Plant virus; Seed borne virus; Solanum lycopersicum; STV

Indexed keywords

ARTICLE; CONTROLLED STUDY; DOUBLE-STRANDED RNA VIRUS; FRUIT; GEL ELECTROPHORESIS; NONHUMAN; PLANT LEAF; PLANT ROOT; PLANT SEED; PRIORITY JOURNAL; REVERSE TRANSCRIPTION LOOP MEDIATED ISOTHERMAL AMPLIFICATION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SOUTHERN TOMATO VIRUS; TISSUE DISTRIBUTION; TOMATO; VIRUS DETECTION; GENETICS; ISOLATION AND PURIFICATION; NUCLEIC ACID AMPLIFICATION; PLANT DISEASE; PLANT VIRUS; PROCEDURES; REVERSE TRANSCRIPTION; TEMPERATURE; VIROLOGY;

PRIMER DNA; VIRUS RNA;

DNA PRIMERS; LYCOPERSICON ESCULENTUM; NUCLEIC ACID AMPLIFICATION TECHNIQUES; PLANT DISEASES; PLANT VIRUSES; REVERSE TRANSCRIPTION; RNA, VIRAL; SENSITIVITY AND SPECIFICITY; TEMPERATURE;

EID: 85006132150     PISSN: 01660934     EISSN: 18790984     Source Type: Journal    
DOI: 10.1016/j.jviromet.2016.12.004     Document Type: Article

References (20)

1. Alfaro-Fernández, A., Sánchez-Navarro, J.A., Cebrián, M.C., Córdoba-Sellés, M.C., Pallás, V., Jordá, C., Simultaneous detection and identification of Pepino mosaic virus isolates by multiplex one-step RT-PCR. Eur. J. Plant Pathol. 125 (2009), 143–158.
2. 2 resistance in tomato (Lycopersicon esculentum). Plant Pathol., 54, 2005, 566.
3. Bühlmann, A., Pothier, J.F., Rezzonico, F., Smits, T.H., Andreou, M., Boonham, N., Duffy, B., Frey, J.E., Erwinia amylovora loop-mediated isothermal amplification (LAMP) assay for rapid pathogen detection and on-site diagnosis of fire blight. J. Microbiol. Methods 92 (2013), 332–339.
4. Boonham, N., Pérez, L.G., Mendez, M., Peralta, E.L., Blockley, A., Walsh, K., Barker, I., Mumford, R., Development of a real-time RT-PCR assay for the detection of Potato spindle tuber viroid. J. Virol. Methods 116 (2004), 139–146.
5. Budziszewska, M., Wieczorek, P., Obrępalska-Stęplowska, A., One-step reverse transcription loop-mediated isothermal amplification (RT-LAMP) for detection of Tomato torrado virus. Arch. Virol. 161 (2016), 1359–1364.
6. Candresse, T., Marais, A., Faure, C., First report of Southern tomato virus on tomatoes in southwest France. Genome 3 (2015), e01226–15.
7. Ferriol, I., Ruiz-Ruiz, S., Rubio, L., Detection and absolute quantitation of Broad bean wilt virus 1 (BBWV-1) and BBWV-2 by real time RT-PCR. J. Virol. Methods 177 (2011), 202–205.
8. Francois, P., Tangomo, M., Hibbs, J., Bonetti, E.J., Boehme, C.C., Notomi, T., Perkins, M.D., Schrenzel, J., Robustness of a loop-mediated isothermal amplification reaction for diagnostic applications. FEMS Immunol. Med. Microbiol. 62 (2011), 41–48.
9. Iacono, G., Hernandez-Llopis, D., Alfaro-Fernandez, A., Davino, M., Font, M., Panno, S., Galipenso, L., Rubio, L., Davino, S., First report of Southern tomato virus in tomato crops in Italy. New Dis. Rep., 32, 2015.
10. Larkin, M.A., Blackshields, G., Brown, N.P., Chenna, R., McGettigan, P.A., McWilliam, H., Valentin, F., Wallace, I.M., Wilm, A., Lopez, R., Clustal W and Clustal X version 2.0. Bioinformatics 23 (2007), 2947–2948.
11. Mori, Y., Notomi, T., Loop-mediated isothermal amplification (LAMP): a rapid, accurate, and cost-effective diagnostic method for infectious diseases. J. Infect. Chemother. 15 (2009), 62–69.
12. Padmanabhan, C., Zheng, Y., Li, R., Fei, Z., Ling, K.S., Complete genome sequence of southern tomato virus naturally infecting tomatoes in Bangladesh. Genome Announc., 3, 2015, 10.1128/genomeA.01522-15.
13. Padmanabhan, C., Zheng, Y., Li, R., Sun, S.E., Zhang, D., Liu, Y., Fei, Z., Ling, K.S., Complete genome sequence of southern tomato virus identified in China using next-generation sequencing. Genome Announc., 3, 2015, 10.1128/genomeA.01226-15.
14. Parida, M., Sannarangaiah, S., Dash, P.K., Rao, P., Morita, K., Loop mediated isothermal amplification (LAMP): a new generation of innovative gene amplification technique; perspectives in clinical diagnosis of infectious diseases. Rev. Med. Virol. 18 (2008), 407–421.
15. Przewodowska, A., Zacharzewska, B., Chołuj, J., Treder, K., A one-step, real-Time reverse transcription loopmediated isothermal amplification assay to detect potato virus Y. Am. J. Potato Res. 92 (2015), 303–311.
16. Sabanadzovic, S., Valverde, R.A., Brown, J.K., Martin, R.R., Tzanetakis, I.E., Southern tomato virus: the link between the families Totiviridae and Partitiviridae. Virus Res. 140 (2009), 130–137.
17. Soliman, H., El-Matbouli, M., Reverse transcription loop-mediated isothermal amplification (RT-LAMP) for rapid detection of viral Hemorrhagic septicaemia virus (VHS). Vet. Microbiol. 114 (2006), 205–213.
18. Tomlinson, J., Dickinson, M., Boonham, N., Detection of Botrytis cinerea by loop-mediated isothermal amplification. Lett. Appl. Microbiol. 51 (2010), 650–657.
19. Verbeek, M., Dullemans, A., Espino, A., Botella, M., Alfaro-Fernández, A., Font, M., First report of Southern tomato virus in tomato in the Canary Islands, Spain. J. Plant Pathol., 2015, 97.
20. Zong, X., Wang, W., Wei, H., Wang, J., Chen, X., Xu, L., Zhu, D., Tan, Y., Liu, Q., Rapid detection of Prunus necrotic ringspot virus using magnetic nanoparticle-assisted reverse transcription loop-mediated isothermal amplification. J. Virol. Methods 208 (2014), 85–89.