One-step reverse transcription loop-mediated isothermal amplification (RT-LAMP) for detection of tomato torrado virus

Archives of Virology

Volumn 161, Issue 5, 2016, Pages 1359-1364

  Budziszewska, Marta ^a   Wieczorek, Przemysław ^a   Obrępalska Stęplowska, Aleksandra ^a  

^a INSTITUTE OF PLANT PROTECTION NATIONAL RESEARCH INSTITUTE   (Poland)

Author keywords

Diagnostic protocol; Plant virus detection; RT LAMP; Torradovirus; Virus diagnostics

Indexed keywords

VIRUS RNA;

GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; NUCLEIC ACID AMPLIFICATION; NUCLEOTIDE SEQUENCE; PICORNAVIRIDAE; PICORNAVIRIDAE INFECTIONS; PROCEDURES; SEQUENCE ALIGNMENT; TOMATO; VIROLOGY;

BASE SEQUENCE; LYCOPERSICON ESCULENTUM; MOLECULAR SEQUENCE DATA; NUCLEIC ACID AMPLIFICATION TECHNIQUES; PICORNAVIRIDAE; PICORNAVIRIDAE INFECTIONS; RNA, VIRAL; SEQUENCE ALIGNMENT;

EID: 84964262602     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-016-2774-2     Document Type: Article

References (33)

1. Van der Vlugt RA, Verbeek M, Dullemans A, Wintermantel WM, Cuellar WJ, Fox A, Thompson JR (2015) Torradoviruses. Annu Rev Phytopathol. doi:10.1146/annurev-phyto-080614-120021
2. Budziszewska M, Obrepalska-Steplowska A, Wieczorek P, Pospieszny H (2008) The nucleotide sequence of a Polish isolate of tomato torrado virus. Virus Genes 37:400–406
3. Verdin E, Gognalons P, Wipf-Scheibel C, Bornard I, Ridray G, Schoen L, Lecoq H (2009) First report of Tomato torrado virus in tomato crops in France. Plant Dis 93:1352
4. Alfaro-Fernández A, Bese G, Córdoba-Sellés C, Cebrián MC, Herrera-Vásquez JA, Forray A, Jordá C (2009) First report of Tomato torrado virus infecting tomato in Hungary. Plant Dis 93:554
5. Pospieszny H, Borodynko N, Obrępalska-Stęplowska A, Hasiów B (2007) The first report of Tomato torrado virus in Poland. Plant Dis 91:1364
6. Alfaro-Fernández A, Córdoba-Sellés MC, Cebrián MC, Sánchez-Navarro JA, Espino A, Martın R, Jordá C (2007) First report of Tomato torrado virus in tomato in the Canary Islands, Spain. Plant Dis 91:1060
7. Verbeek M, Dullemans AM, van den Heuvel JFJ, Maris PC, Van der Vlugt RAA (2007) Identification and characterization of Tomato torrado virus, a new picorna-like virus from tomato. Arch Virol 152:881–990
8. Alfaro-Fernández A, Córdoba-Sellés MDC, Juárez M, Herrera-Vásquez JA, Sánchez Navarro JA, Cebrián MDC, Font MI, Jordá C (2010) Occurrence and geographical distribution of the ‘Torrado’ disease in Spain. J Phytopathol 158:457–469
9. Davino S, Bivona L, Iacono G, Davino M (2010) First report of Tomato torrado virus infecting tomato in Italy. Plant Dis 94:1172
10. Gambley CF, Thomas JE, Persley DM, Hall BH (2010) First report of Tomato torrado virus on tomato from Australia. Plant Dis 94:486
11. Verbeek M, Dullemans AM (2012) First report of Tomato torrado virus infecting tomato in Colombia. Plant Dis 96:592
12. Herrera-Vasquez JA, Alfaro-Fernández A, Cordoba-Selles MC, Cebrian MC, Font MI, Jorda C (2009) First report of Tomato torrado virus infecting tomato in single and mixed infections with Cucumber mosaic virus in Panama. Plant Dis 93:198
13. Moodley V, Gubba A, Mafongoya PL (2015) First report of Tomato torrado virus (ToTV) on tomato (Solanum lycopersicum L.) in South Africa. Plant Dis. doi:10.1094/PDIS-06-15-0683-PDN
14. Pospieszny H, Budziszewska M, Hasiów-Jaroszewska B, Obrepalska-Steplowska A, Borodynko N (2010) Biological and molecular characterization of Polish isolates of Tomato torrado virus. J Phytopathol 158:56–62
15. Wieczorek P, Obrępalska-Stęplowska A (2013) Multiplex RT-PCR reaction for simultaneous detection of Tomato torrado virus and Pepino mosaic virus co-infecting Solanum lycopersicum. J Plant Prot Res 53:289–294
16. Pospieszny H, Hasiów-Jaroszewska B, Rymelska N, Borodynko N (2012) Using the IC real-time RT-PCR technique for the detection of tomato torrado virus (ToTV) in tomato seedling from infected seeds. Prog Plant Prot 52:515–517 (In Polish)
17. Budziszewska M, Wieczorek P, Zhang Y, Frishman D, Obrepalska-Steplowska A (2014) Genetic variability within the Polish tomato torrado virus Kra isolate caused by deletions in the 3′-untranslated region of genomic RNA1. Virus Res 185:47–52
18. Herrera-Vásquez JA, Rubio L, Alfaro-Fernández A, Debreczeni DE, Font-San-Ambrosio I, Falk BW, Ferriol I (2015) Detection and absolute quantitation of tomato torrado virus (ToTV) by real time RT-PCR. J Virol Methods. doi:10.1016/j.jviromet.2015.04.029
19. Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, Amino N, Hase T (2000) Loop-mediated isothermal amplification of DNA. Nucleic Acids Res 28:E63
20. Fernández-Soto P, Gandasegui Arahuetes J, Sánchez Hernández A, López Abán J, Vicente Santiago B, Muro A (2014) A loop-mediated isothermal amplification (LAMP) assay for early detection of Schistosoma mansoni in stool samples: a diagnostic approach in a murine model. Jex AR, ed. PLoS Negl Trop Dis. doi:10.1371/journal.pntd.0003126
21. Przewodowska A, Zacharzewska B, Chołuj J, Treder K (2015) A one step, real-time reverse transcription loop mediated isothermal amplification assay to detect Potato virus Y. Am J Potato Res. doi:10.1007/s12230-015-9430-3
22. Shen W, Tuo D, Yan P, Li X, Zhou P (2014) Detection of Papaya leaf distortion mosaic virus by reverse-transcription loop-mediated isothermal amplification. J Virol Methods 195:174–179
23. Wei QW, Yu C, Zhang SY, Yang CY, Miriam K, Zhang WN, Dou DL, Tao XR (2012) One-step detection of Bean pod mottle virus in soybean seeds by the reverse-transcription loop-mediated isothermal amplification. Virol J 9:187
24. Zong X, Wang W, Wei H, Wang J, Chen X, Xu L, Zhu D, Tan Y, Liu Q (2014) Rapid detection of Prunus necrotic ringspot virus using magnetic nanoparticle-assisted reverse transcription loop-mediated isothermal amplification. J Virol Methods 208:85–89
25. Wang Z, Gu Q, Sun H, Li H, Sun B, Liang X, Yuan Y, Liu R, Shi Y (2014) One-step reverse transcription loop mediated isothermal amplification assay for sensitive and rapid detection of cucurbit chlorotic yellows virus. J Virol Methods 195:63–66
26. Budziszewska M, Pospieszny H, Obrępalska-Stęplowska A (2015) Genome characteristics, phylogeny and varying host specificity of Polish Kra and Ros isolates of tomato torrado virus. J Phytopathol. doi:10.1111/jph.12417
27. Wieczorek P, Budziszewska M, Obrepalska-Steplowska A (2015) Construction of infectious clones of tomato torrado virus and their delivery by agroinfiltration. Arch Virol 160:517–52128. Camacho-Beltrán E, Armenta-Chávez R, Romero-Romero JL, Magallanes-Tapia MA, Leyva-López NE, Apodaca-Sánchez MÁ, Méndez-Lozano J (2015). First report of pepper as a natural new host for Tomato marchitez virus in Sinaloa, Mexico. Can J Plant Pathol 37: 384-389
28. Camacho-Beltrán E, Armenta-Chávez R, Romero-Romero JL, Magallanes-Tapia MA, Leyva-López NE, Apodaca-Sánchez MÁ, Méndez-Lozano J (2015) First report of pepper as a natural new host for Tomato marchitez virus in Sinaloa, Mexico. Can J Plant Pathol 37:384–389
29. Turina M, Ricker MD, Lenzi R, Masenga V, Ciuffo M (2007) A severe disease of tomato in the Culiacan area (Sinaloa, Mexico) is caused by a new picorna-like viral species. Plant Dis 91:932–94130
30. Adams IP, Skeleton A, Macarthur R, Hodges T, Hinds H, Flint L, Nath PD, Boonham N, Fox A (2014) Carrot yellow leaf virus is associated with carrot internal necrosis. PLoS One 9(11):e109125
31. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410
32. Fu S, Qu G, Guo S, Ma L, Zhang N, Zhang S, Gao S, Shen Z (2010) Applications of loop-mediated isothermal DNA amplification. Appl Biochem Biotechnol 163:845–850
33. Przybylska A, Fiedler Ż, Kucharczyk H, Obrępalska-Stęplowska A (2015) Detection of the quarantine species Thrips palmi by loop-mediated isothermal amplification. PLoS One 10(3):e0122033. doi:10.1371/journal.pone.0122033