Five novel species in the Lodderomyces clade associated with insects

International Journal of Systematic and Evolutionary Microbiology

Volumn 66, Issue 11, 2016, Pages 4881-4889

  Liu, Xiao Jing ^a   Yi, Ze Hao ^a   Ren, Yong Cheng ^a   Li, Ying ^a   Hui, Feng Li ^a  

^a NANYANG NORMAL UNIVERSITY   (China)

Author keywords

Ascomycetes yeast; Fungal ecology; Phylogenetics; Phytophagous beetle; Species diversity

Indexed keywords

GENOMIC DNA; INTERNAL TRANSCRIBED SPACER; LARGE SUBUNIT RIBOSOMAL RNA; FUNGAL DNA; RIBOSOMAL SPACER DNA; RIBOSOME RNA;

ACTINOMYCETALES; ADULT; ARTICLE; BUDDING YEAST; CANDIDA CHAULIODES; CANDIDA COLEOPTERORUM; CANDIDA MARGITIS; CANDIDA OXYCETONIAE; CANDIDA PARACHAULIODIS; CANDIDA PARAPSILOSIS; CANDIDA SAKAEOENSIS; CANDIDA XIAGUANENSIS; DNA EXTRACTION; DNA SEQUENCE; FUNGUS ISOLATION; INSECT; LODDEROMYCES BEIJINGENSIS; LODDEROMYCES ELONGISPORUS; MORPHOTYPE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL; ANIMAL; BEETLE; CHINA; CLASSIFICATION; DNA BASE COMPOSITION; GENETICS; ISOLATION AND PURIFICATION; LARVA; MICROBIOLOGICAL EXAMINATION; MICROBIOLOGY;

ANIMALS; BASE COMPOSITION; BEETLES; CHINA; DNA, FUNGAL; DNA, RIBOSOMAL SPACER; INSECTS; LARVA; MYCOLOGICAL TYPING TECHNIQUES; PHYLOGENY; RNA, RIBOSOMAL; SACCHAROMYCETALES; SEQUENCE ANALYSIS, DNA;

EID: 85005943484     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijsem.0.001446     Document Type: Article

References (28)

1. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389–3402.
2. Chang, C. F., Lin, Y. C., Chen, S. F., Carvajal Barriga, E. J., Carvaja Barriga, E. J., Barahona, P. P., James, S. A., Bond, C. J., Roberts, I. N. & Lee, C. F. (2012). Candida theae sp. nov., a new anamorphic beverage-associated member of the Lodderomyces clade. Int J FoodMicrobiol 153, 10–14.
3. Daniel, H. M., Lachance, M. A. & Kurtzman, C. P. (2014). On the reclassification of species assigned to Candida and other anamorphic ascomycetous yeast genera based on phylogenetic circumscription. Antonie van Leeuwenhoek 106, 67–84.
4. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783–791.
5. Gouliamova, D. E., Dimitrov, R. A., Smith, M. T., Groenewald, M., Stoilova-Disheva, M. M., Guéorguiev, B. V. & Boekhout, T. (2016). DNA barcoding revealed Nematodospora valgi gen. nov., sp. nov. and Candida cetoniae sp. nov. in the Lodderomyces clade. Fungal Biol 120, 179–190.
6. Hui, F. L., Niu, Q. H., Ke, T., Li, Y. X. & Lee, C. F. (2013). Candida sanyaensis sp. nov., an ascomycetous yeast species isolated from soil. Antonie van Leeuwenhoek 103, 47–52.
7. Ji, Z. H., Jia, J. H. & Bai, F. Y. (2009). Four novel Candida species in the Candida albicans/Lodderomyces elongisporus clade isolated from the gut of flower beetles. Antonie van Leeuwenhoek 95, 23–32.
8. Jindamorakot, S., Limtong, S., Yongmanitchai, W., Tuntirungkij, M., Potacharoen, W., Kawasaki, H. & Nakase, T. (2007). Two new anamorphic yeasts, Candida thailandica sp. nov. and Candida lignicola sp. nov., isolated from insect frass in Thailand. FEMS Yeast Res 7, 1409–1414.
9. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111–120.
10. Kurtzman, C. P. (2011). Lodderomyces van der Walt (1971). In The Yeasts, a Taxonomic Study, 5th edn, vol. 2, pp. 561–563. Edited by C. P. Kurtzman, J. W. Fell & T. Boekhout. Amsterdam: Elsevier.
11. Kurtzman, C. P., Fell, J. W., Boekhout, T. & Robert, V. (2011). Methods for isolation, phenotypic characterization and maintenance of yeasts. In The Yeasts, a Taxonomic Study, 5th edn, vol. 1, pp. 87–110. Edited by C. P. Kurtzman, J. W. Fell & T. Boekhout. Amsterdam: Elsevier.
12. Kurtzman, C. P. & Robnett, C. J. (1998). Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie van Leeuwenhoek 73, 331–371.
13. Lachance, M. A., Boekhout, T., Scorzetti, G., Fell, J. W. & Kurtzman, C. P. (2011). Candida Berkhout (1923). In The Yeasts, a Taxonomic Study, 5th edn, vol. 2, pp. 987–1278. Edited by C. P. Kurtzman, J. W. Fell & T. Boekhout. Amsterdam: Elsevier.
14. Lachance, M. A., Ewing, C. P., Bowles, J. M. & Starmer, W. T. (2005). Metschnikowia hamakuensis sp. nov., Metschnikowia kamakouana sp. nov. and Metschnikowia mauinuiana sp. nov., three endemic yeasts from Hawaiian nitidulid beetles. Int J Syst Evol Microbiol 55, 1369–1377.
15. Limtong, S., Koowadjanakul, N., Jindamorakot, S., Yongmanitchai, W. & Nakase, T. (2012). Candida sirachaensis sp. nov. and Candida sakaeoensis sp. nov. two anamorphic yeast species from phylloplane in Thailand. Antonie van Leeuwenhoek 102, 221–229.
16. Nakase, T., Jindamorakot, S., Ninomiya, S., Imanishi, Y. & Kawasaki, H. (2009). Candida wancherniae sp. nov. and Candida morakotiae sp. nov., two novel ascomycetous anamorphic yeast species found in Thailand. J Gen Appl Microbiol 55, 93–100.
17. Nguyen, N. H., Suh, S. O. & Blackwell, M. (2007). Five novel Candida species in insect-associated yeast clades isolated from Neuroptera and other insects. Mycologia 99, 842–858.
18. Nguyen, N. H., Suh, S. O., Marshall, C. J. & Blackwell, M. (2006). Morphological and ecological similarities: wood-boring beetles associated with novel xylose-fermenting yeasts, Spathaspora passalidarum gen. sp. nov. and Candida jeffriesii sp. nov. Mycol Res 110, 1232–1241.
19. Nitiyon, S., Boonmak, C., Am-In, S., Jindamorakot, S., Kawasaki, H., Yongmanitchai, W. & Limtong, S. (2011). Candida saraburiensis sp. nov. and Candida prachuapensis sp. nov., xylose-utilizing yeast species isolated in Thailand. Int J Syst Evol Microbiol 61, 462–468.
20. Ren, Y. C., Xu, L. L., Zhang, L. & Hui, F. L. (2015). Candida baotianmanensis sp. nov. and Candida pseudoviswanathii sp. nov., two ascosporic yeast species isolated from the gut of beetles. Int J Syst Evol Microbiol 65, 3580– 3585.
21. Sipiczki, M. (2013). Detection of yeast species also occurring in substrates associated with animals and identification of a novel dimorphic species in Verbascum flowers from Georgia. Antonie van Leeuwenhoek 103, 567–576.
22. Suh, S. O., McHugh, J. V. & Blackwell, M. (2004). Expansion of the Candida tanzawaensis yeast clade: 16 novel Candida species from basidiocarpfeeding beetles. Int J Syst Evol Microbiol 54, 2409–2429.
23. Suh, S. O., Nguyen, N. H. & Blackwell, M. (2006). A yeast clade near Candida kruisii uncovered: nine novel Candida species associated with basidioma- feeding beetles. Mycol Res 110, 1379–1394.
24. Suh, S. O., Nguyen, N. H. & Blackwell, M. (2008). Yeasts isolated from plant-associated beetles and other insects: seven novel Candida species near Candida albicans. FEMS Yeast Res 8, 88–102.
25. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731–2739.
26. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876–4882.
27. Urbina, H., Schuster, J. & Blackwell, M. (2013). The gut of Guatemalan passalid beetles: a habitat colonized by cellobiose- and xylose-fermenting yeasts. Fungal Ecology 6, 339–355.
28. White, T. J., Bruns, T., Lee, S. & Taylor, J. (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols: A Guide for Methods and Applications, pp. 315–322. Edited by M. A. Innis, D. H. Gelfand, J. J. Sninsky & T. J. Taylor. New York: Academic.