Investigating the effect of charged amino acids on DNA conformation in EcoRI-DNA complex: A molecular dynamics simulation study

Journal of Biomolecular Structure and Dynamics

Volumn 35, Issue 16, 2017, Pages 3540-3554

  Ramachandrakurup, Sreelakshmi ^a   Ammapalli, Sumanth ^a   Ramakrishnan, Vigneshwar ^a  

^a SASTRA UNIVERSITY   (India)

Author keywords

DNA kinks; Essential dynamics; Inner product matrix; Molecular dynamics; Partial neutralization

Indexed keywords

AMINO ACID; ARGININE; ASPARTIC ACID; LYSINE; TYPE II SITE SPECIFIC DEOXYRIBONUCLEASE; DNA; PROTEIN BINDING;

ARTICLE; BASE PAIRING; CATALYSIS; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; DNA CONFORMATION; DNA PROTEIN COMPLEX; DNA STRUCTURE; HYDROGEN BOND; MOLECULAR DYNAMICS; PRIORITY JOURNAL; BINDING SITE; CHEMISTRY; CONFORMATION; ESCHERICHIA COLI; KINETICS; PROTEIN DOMAIN; PROTEIN MOTIF; PROTEIN SECONDARY STRUCTURE; STATIC ELECTRICITY; THERMODYNAMICS;

AMINO ACID MOTIFS; ARGININE; ASPARTIC ACID; BINDING SITES; DEOXYRIBONUCLEASE ECORI; DNA; ESCHERICHIA COLI; HYDROGEN BONDING; KINETICS; LYSINE; MOLECULAR DYNAMICS SIMULATION; NUCLEIC ACID CONFORMATION; PROTEIN BINDING; PROTEIN INTERACTION DOMAINS AND MOTIFS; PROTEIN STRUCTURE, SECONDARY; STATIC ELECTRICITY; THERMODYNAMICS;

EID: 85003869036     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.2016.1261741     Document Type: Article

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