Improved draft genome sequence of probiotic strain Lactobacillus gasseri K7

Genome Announcements

Volumn 2, Issue 4, 2014, Pages

  Treven, Primož ^a   Trmčić, Aljoša ^a   Matijašić, Bojana Bogovič ^a   Rogelj, Irena ^a  

^a UNIVERSITY OF LJUBLJANA   (Slovenia)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85003550243     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00725-14     Document Type: Article

References (17)

1. Selle K, Klaenhammer TR. 2013. Genomic and phenotypic evidence for probiotic influences of Lactobacillus gasseri on human health. FEMS Microbiol. Rev. 37:915-935.
2. Rogelj I, Matijašić BB. 2006. Lactobacillus gasseri LF221 and K7-from isolation to application. Biologica 61:761-769. http://dx.doi.org/10.2478/s11756-006-0154-1.
3. Sagaya FM, Hacin B, Tompa G, Ihan A, Spela S, Cerne M, Hurrell RF, Matijasic BB, Rogelj I, Vergeres G. 2014. Lactobacillus gasseri K7 modulates the blood cell transcriptome of conventional mice infected with Escherichia coli O157 H7. J. Appl. Microbiol. 116:1282-1296. http://dx.doi.org/10.1111/jam.12440.
4. Bogovič Matijašić B, Rogelj I. 2011. Bacteriocins of probiotics and enteric cytoprotection, p 313-354. In Malago JJ, Koninkx JFJG, Marinšek-Logar R (ed), Probiotic bacteria and enteric infections: cytoprotection by probiotic bacteria. Springer Verlag, New York, NY.
5. Zorič Peternel M, Čanžek Majhenić A, Holo H, Nes I, Salehian Z, Berlec A, Rogelj I. 2010. Wide-inhibitory spectra bacteriocins produced by Lactobacillus gasseri K7. Probiotics Antimicrob. Proteins 2:233-240. http://dx.doi.org/10.1007/s12602-010-9044-5.
6. Bogovič-Matijašić B, Rogelj I. 2000. Lactobacillus K7-a new candidate for a probiotic strain. Food Technol. Biotechnol. 38:113-119.
7. Mavrič A, Tompa G, Trmčić A, Rogelj I, Bogovič Matijašić B. 20 May 2014 Bacteriocins of Lactobacillus gasseri K7-Monitoring of gassericin K7 A and B genes' expression and isolation of an active component. Proc. Biochem. http://dx.doi.org/10.1016/j.procbio.2014.04.022.
8. Assefa S, Keane TM, Otto TD, Newbold C, Berriman M. 2009. ABACAS: algorithm-based automatic contiguation of assembled sequences. Bioinformatics 25:1968-1969. http://dx.doi.org/10.1093/bioinformatics/btp347.
9. Untergasser A, Cutcutache I, Koressaar T, Ye J, Faircloth BC, Remm M, Rozen SG. 2012. Primer3-new capabilities and interfaces. Nucleic Acids Res. 40:e115. http://dx.doi.org/10.1093/nar/gks596.
10. Angiuoli SV, Gussman A, Klimke W, Cochrane G, Field D, Garrity G, Kodira CD, Kyrpides N, Madupu R, Markowitz V, Tatusova T, Thomson N, White O. 2008. Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation. Omics 12: 137-141. http://dx.doi.org/10.1089/omi.2008.0017.
11. Markowitz VM, Chen IM, Palaniappan K, Chu K, Szeto E, Grechkin Y, Ratner A, Jacob B, Huang J, Williams P, Huntemann M, Anderson I, Mavromatis K, Ivanova NN, Kyrpides NC. 2012. IMG: the integrated microbial genomes database and comparative analysis system. Nucleic Acids Res. 40:D115-D122. http://dx.doi.org/10.1093/Nar/Gkr1044.
12. Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell B. 2000. Artemis: sequence visualization and annotation. Bioinformatics 16:944-945. http://dx.doi.org/10.1093/bioinformatics/16.10.944.
13. Wattam AR, Abraham D, Dalay O, Disz TL, Driscoll T, Gabbard JL, Gillespie JJ, Gough R, Hix D, Kenyon R, Machi D, Mao C, Nordberg EK, Olson R, Overbeek R, Pusch GD, Shukla M, Schulman J, Stevens RL, Sullivan DE, Vonstein V, Warren A, Will R, Wilson MJ, Yoo HS, Zhang C, Zhang Y, Sobral BW. 2014. PATRIC, the bacterial bioinformatics database and analysis resource. Nucleic Acids Res. 42:D581-D591. http://dx.doi.org/10.1093/Nar/Gkt1099.
14. Zhou Y, Liang YJ, Lynch KH, Dennis JJ, Wishart DS. 2011. PHAST: a fast phage search tool. Nucleic Acids Res. 39:W347-W352. http://dx.doi.org/10.1093/Nar/Gkr485.
15. Siguier P, Perochon J, Lestrade L, Mahillon J, Chandler M. 2006. ISfinder: the reference centre for bacterial insertion sequences. Nucleic Acids Res. 34:D32-D36. http://dx.doi.org/10.1093/Nar/Gkj014.
16. Grissa I, Vergnaud G, Pourcel C. 2007. CRISPRFinder: a Web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res. 35:W52-W57. http://dx.doi.org/10.1093/Nar/Gkm360.
17. de Jong A, van Heel AJ, Kok J, Kuipers OP. 2010. BAGEL2: mining for bacteriocins in genomic data. Nucleic Acids Res. 38:W647-W651. http://dx.doi.org/10.1093/Nar/Gkq365.