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Volumn 540, Issue 7631, 2016, Pages 69-73

The genomic basis of circadian and circalunar timing adaptations in a midge

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM CALMODULIN DEPENDENT PROTEIN KINASE II; CALCIUM CALMODULIN DEPENDENT PROTEIN KINASE II.1; DIMER; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR CLOCK; TRANSCRIPTION FACTOR CYCLE; UNCLASSIFIED DRUG;

EID: 85000348672     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature20151     Document Type: Article
Times cited : (78)

References (78)
  • 1
    • 0002413724 scopus 로고
    • Steuerung und Abstimmung auf die Gezeitenperiodik
    • Die lunare und tägliche Schlüpfperiodik der Mücke Clunio
    • Neumann, D. Die lunare und tägliche Schlüpfperiodik der Mücke Clunio.Steuerung und Abstimmung auf die Gezeitenperiodik. Z. Vgl. Physiol. 53,1-61 (1966).
    • (1966) Z. Vgl. Physiol. , vol.53 , pp. 1-61
    • Neumann, D.1
  • 2
    • 21244446104 scopus 로고
    • Temperature compensation of circasemilunar timing in theintertidal insect Clunio
    • Neumann, D. Temperature compensation of circasemilunar timing in theintertidal insect Clunio. J. Comp. Physiol. 163, 671-676 (1988).
    • (1988) J. Comp. Physiol. , vol.163 , pp. 671-676
    • Neumann, D.1
  • 3
    • 85000732563 scopus 로고    scopus 로고
    • ADMIRALTY Tide Tables (UKHO
    • ADMIRALTY Tide Tables (UKHO, 2014).
    • (2014)
  • 4
    • 33747022410 scopus 로고
    • Genetic adaptation in emergence time of Clunio populations todifferent tidal conditions
    • Neumann, D. Genetic adaptation in emergence time of Clunio populations todifferent tidal conditions. Helgoländer Wiss. Meeresunters. 15, 163-171(1967).
    • (1967) Helgoländer Wiss. Meeresunters. , vol.15 , pp. 163-171
    • Neumann, D.1
  • 5
    • 79956191255 scopus 로고    scopus 로고
    • Timing the tides: Genetic control ofdiurnal and lunar emergence times is correlated in the marine midge Cluniomarinus
    • Kaiser, T. S., Neumann, D., Heckel, D. G. Timing the tides: genetic control ofdiurnal and lunar emergence times is correlated in the marine midge Cluniomarinus. BMC Genet. 12, 49 (2011).
    • (2011) BMC Genet. , vol.12 , pp. 49
    • Kaiser, T.S.1    Neumann, D.2    Heckel, D.G.3
  • 6
    • 84857461998 scopus 로고    scopus 로고
    • Genetic architecture of local adaptation in lunarand diurnal emergence times of the marine midge Clunio marinus(Chironomidae, Diptera)
    • Kaiser, T. S., Heckel, D. G. Genetic architecture of local adaptation in lunarand diurnal emergence times of the marine midge Clunio marinus(Chironomidae, Diptera). PLoS One 7, e32092 (2012).
    • (2012) PLoS One , vol.7 , pp. 32092
    • Kaiser, T.S.1    Heckel, D.G.2
  • 7
    • 0031442734 scopus 로고    scopus 로고
    • Natural variation in a Drosophila clock gene and temperaturecompensation
    • Sawyer, L. A., et al. Natural variation in a Drosophila clock gene and temperaturecompensation. Science 278, 2117-2120 (1997).
    • (1997) Science , vol.278 , pp. 2117-2120
    • Sawyer, L.A.1
  • 8
    • 34347397042 scopus 로고    scopus 로고
    • A molecular basis for natural selection at the timeless locus inDrosophila melanogaster
    • Sandrelli, F., et al. A molecular basis for natural selection at the timeless locus inDrosophila melanogaster. Science 316, 1898-1900 (2007).
    • (2007) Science , vol.316 , pp. 1898-1900
    • Sandrelli, F.1
  • 9
    • 84899809305 scopus 로고    scopus 로고
    • Molecular evolution of a pervasive natural amino-acidsubstitution in Drosophila cryptochrome
    • Pegoraro, M., et al. Molecular evolution of a pervasive natural amino-acidsubstitution in Drosophila cryptochrome. PLoS One 9, e86483 (2014).
    • (2014) PLoS One , vol.9 , pp. 86483
    • Pegoraro, M.1
  • 10
    • 84960497042 scopus 로고    scopus 로고
    • Genome-wide association analysis identifies novel loci forchronotype in 100,420 individuals from the UK Biobank
    • Lane, J. M., et al. Genome-wide association analysis identifies novel loci forchronotype in 100,420 individuals from the UK Biobank. Nat. Commun. 7,10889 (2016).
    • (2016) Nat. Commun. , vol.7 , pp. 10889
    • Lane, J.M.1
  • 11
    • 84957582620 scopus 로고    scopus 로고
    • GWAS of 89,283 individuals identifies genetic variants associatedwith self-reporting of being a morning person
    • Hu, Y., et al. GWAS of 89,283 individuals identifies genetic variants associatedwith self-reporting of being a morning person. Nat. Commun. 7, 10448 (2016).
    • (2016) Nat. Commun. , vol.7 , pp. 10448
    • Hu, Y.1
  • 12
    • 84875376141 scopus 로고    scopus 로고
    • Genetic basis of humancircadian rhythm disorders
    • Jones, C. R., Huang, A. L., Ptác ek, L. J., Fu, Y.-H. Genetic basis of humancircadian rhythm disorders. Exp. Neurol. 243, 28-33 (2013).
    • (2013) Exp. Neurol. , vol.243 , pp. 28-33
    • Jones, C.R.1    Huang, A.L.2    Ptácek, L.J.3    Fu, Y.-H.4
  • 13
    • 79951558268 scopus 로고    scopus 로고
    • Another place, another timer:marine species and the rhythms of life
    • Tessmar-Raible, K., Raible, F., Arboleda, E. Another place, another timer:marine species and the rhythms of life. BioEssays 33, 165-172 (2011).
    • (2011) Bio Essays , vol.33 , pp. 165-172
    • Tessmar-Raible, K.1    Raible, F.2    Arboleda, E.3
  • 14
    • 84919651803 scopus 로고    scopus 로고
    • Comparative genome sequencing reveals genomic signature ofextreme desiccation tolerance in the anhydrobiotic midge
    • Gusev, O., et al. Comparative genome sequencing reveals genomic signature ofextreme desiccation tolerance in the anhydrobiotic midge. Nat. Commun. 5,4784 (2014).
    • (2014) Nat. Commun. , vol.5 , pp. 4784
    • Gusev, O.1
  • 15
    • 84929895368 scopus 로고    scopus 로고
    • Chironomid midges (Diptera, chironomidae) show extremelysmall genome sizes
    • Cornette, R., et al. Chironomid midges (Diptera, chironomidae) show extremelysmall genome sizes. Zoolog. Sci. 32, 248-254 (2015).
    • (2015) Zoolog. Sci. , vol.32 , pp. 248-254
    • Cornette, R.1
  • 16
    • 84907411729 scopus 로고    scopus 로고
    • Compact genome of the Antarctic midge is likely anadaptation to an extreme environment
    • Kelley, J. L., et al. Compact genome of the Antarctic midge is likely anadaptation to an extreme environment. Nat. Commun. 5, 4611 (2014).
    • (2014) Nat. Commun. , vol.5 , pp. 4611
    • Kelley, J.L.1
  • 17
    • 76749137596 scopus 로고    scopus 로고
    • Drosophila timeless2 is required for chromosome stability andcircadian photoreception
    • Benna, C., et al. Drosophila timeless2 is required for chromosome stability andcircadian photoreception. Curr. Biol. 20, 346-352 (2010).
    • (2010) Curr. Biol. , vol.20 , pp. 346-352
    • Benna, C.1
  • 18
    • 84900817183 scopus 로고    scopus 로고
    • CaMKII is essential for the cellular clock and coupling betweenmorning and evening behavioral rhythms
    • Kon, N., et al. CaMKII is essential for the cellular clock and coupling betweenmorning and evening behavioral rhythms. Genes Dev. 28, 1101-1110 (2014).
    • (2014) Genes Dev. , vol.28 , pp. 1101-1110
    • Kon, N.1
  • 19
    • 33745101711 scopus 로고    scopus 로고
    • Second messenger and Ras/MAPK signalling pathways regulate CLOCK/CYCLE-dependent transcription.J
    • Weber, F., Hung, H. C., Maurer, C., Kay, S. A. Second messenger and Ras/MAPK signalling pathways regulate CLOCK/CYCLE-dependent transcription.J. Neurochem. 98, 248-257 (2006).
    • (2006) Neurochem , vol.98 , pp. 248-257
    • Weber, F.1    Hung, H.C.2    Maurer, C.3    Kay, S.A.4
  • 20
    • 36249006061 scopus 로고    scopus 로고
    • Intracellular Ca2+regulates free-running circadian clock oscillation in vivo
    • Harrisingh, M. C., Wu, Y., Lnenicka, G. A., Nitabach, M. N. Intracellular Ca2+regulates free-running circadian clock oscillation in vivo. J. Neurosci. 27,12489-12499 (2007).
    • (2007) J. Neurosci. , vol.27 , pp. 12489-12499
    • Harrisingh, M.C.1    Wu, Y.2    Lnenicka, G.A.3    Nitabach, M.N.4
  • 21
    • 0442319504 scopus 로고    scopus 로고
    • The doubletime and CKII kinases collaborate topotentiate Drosophila per transcriptional repressor activity
    • Nawathean, P., Rosbash, M. The doubletime and CKII kinases collaborate topotentiate Drosophila PER transcriptional repressor activity. Mol. Cell 13,213-223 (2004).
    • (2004) Mol. Cell , vol.13 , pp. 213-223
    • Nawathean, P.1    Rosbash, M.2
  • 22
    • 80052284705 scopus 로고    scopus 로고
    • A mechanism for tunable autoinhibition in the structure of ahuman Ca2+/calmodulin-dependent kinase II holoenzyme
    • Chao, L. H., et al. A mechanism for tunable autoinhibition in the structure of ahuman Ca2+/calmodulin-dependent kinase II holoenzyme. Cell 146, 732-745(2011).
    • (2011) Cell , vol.146 , pp. 732-745
    • Chao, L.H.1
  • 23
    • 0034233795 scopus 로고    scopus 로고
    • Alternative splicing of Drosophila calcium/calmodulindependentprotein kinase II regulates substrate specificity and activation
    • GuptaRoy, B., et al. Alternative splicing of Drosophila calcium/calmodulindependentprotein kinase II regulates substrate specificity and activation.Brain Res. Mol. Brain Res. 80, 26-34 (2000).
    • (2000) Brain Res. Mol. Brain Res. , vol.80 , pp. 26-34
    • Guptaroy, B.1
  • 24
    • 77949272793 scopus 로고    scopus 로고
    • Intersubunit capture of regulatory segments is a componentof cooperative CaMKII activation
    • Chao, L. H., et al. Intersubunit capture of regulatory segments is a componentof cooperative CaMKII activation. Nat. Struct. Mol. Biol. 17, 264-272 (2010).
    • (2010) Nat. Struct. Mol. Biol. , vol.17 , pp. 264-272
    • Chao, L.H.1
  • 25
    • 0001162221 scopus 로고
    • Behavior of period-altered circadian rhythm mutants of Drosophila in light:dark cycles (Diptera: Drosophilidae)
    • Hamblen-Coyle, M. J., Wheeler, D. A., Rutila, J. E., Rosbash, M., Hall, J. C.Behavior of period-altered circadian rhythm mutants of Drosophila in light:dark cycles (Diptera: Drosophilidae). J. Insect Behav. 5, 417-446 (1992).
    • (1992) J. Insect Behav. , vol.5 , pp. 417-446
    • Hamblen-Coyle, M.J.1    Wheeler, D.A.2    Rutila, J.E.3    Rosbash, M.4    Hall, J.C.5
  • 26
    • 40349087042 scopus 로고    scopus 로고
    • Molecular insights into human daily behavior
    • Brown, S. A., et al. Molecular insights into human daily behavior. Proc. NatlAcad. Sci. USA 105, 1602-1607 (2008).
    • (2008) Proc. NatlAcad. Sci. USA , vol.105 , pp. 1602-1607
    • Brown, S.A.1
  • 27
    • 84885841001 scopus 로고    scopus 로고
    • Circadian and circalunar clock interactions in a marine annelid
    • Zantke, J., et al. Circadian and circalunar clock interactions in a marine annelid.Cell Rep. 5, 99-113 (2013).
    • (2013) Cell Rep. , vol.5 , pp. 99-113
    • Zantke, J.1
  • 28
    • 0027943988 scopus 로고
    • Differential activation of CREBby Ca2+/calmodulin-dependent protein kinases type II and type IV involvesphosphorylation of a site that negatively regulates activity
    • Sun, P., Enslen, H., Myung, P. S., Maurer, R. A. Differential activation of CREBby Ca2+/calmodulin-dependent protein kinases type II and type IV involvesphosphorylation of a site that negatively regulates activity. Genes Dev. 8,2527-2539 (1994).
    • (1994) Genes Dev. , vol.8 , pp. 2527-2539
    • Sun, P.1    Enslen, H.2    Myung, P.S.3    Maurer, R.A.4
  • 29
    • 0035910523 scopus 로고    scopus 로고
    • Calmodulin kinase II attenuation of gene transcriptionby preventing cAMP response element-binding protein (CREB) dimerization andbinding of the CREB-binding protein
    • Wu, X., McMurray, C. T. Calmodulin kinase II attenuation of gene transcriptionby preventing cAMP response element-binding protein (CREB) dimerization andbinding of the CREB-binding protein. J. Biol. Chem. 276, 1735-1741 (2001).
    • (2001) J. Biol. Chem. , vol.276 , pp. 1735-1741
    • Wu, X.1    McMurray, C.T.2
  • 30
    • 0033119313 scopus 로고    scopus 로고
    • The Drosophila dCREB2 gene affects thecircadian clock
    • Belvin, M. P., Zhou, H., Yin, J. C. P. The Drosophila dCREB2 gene affects thecircadian clock. Neuron 22, 777-787 (1999).
    • (1999) Neuron , vol.22 , pp. 777-787
    • Belvin, M.P.1    Zhou, H.2    Yin, J.C.P.3
  • 31
    • 0034816676 scopus 로고    scopus 로고
    • Promoter analysis for daily expression of Drosophila timelessgene
    • Okada, T., et al. Promoter analysis for daily expression of Drosophila timelessgene. Biochem. Biophys. Res. Commun. 283, 577-582 (2001).
    • (2001) Biochem. Biophys. Res. Commun. , vol.283 , pp. 577-582
    • Okada, T.1
  • 32
    • 34347332369 scopus 로고    scopus 로고
    • Functional role of CREB-binding protein in the circadian clocksystem of Drosophila melanogaster
    • Lim, C., et al. Functional role of CREB-binding protein in the circadian clocksystem of Drosophila melanogaster. Mol. Cell. Biol. 27, 4876-4890 (2007).
    • (2007) Mol. Cell. Biol. , vol.27 , pp. 4876-4890
    • Lim, C.1
  • 33
    • 77957869145 scopus 로고    scopus 로고
    • Coactivation of the CLOCK-BMAL1 complex by CBP mediatesresetting of the circadian clock
    • Lee, Y., et al. Coactivation of the CLOCK-BMAL1 complex by CBP mediatesresetting of the circadian clock. J. Cell Sci. 123, 3547-3557 (2010).
    • (2010) J. Cell Sci. , vol.123 , pp. 3547-3557
    • Lee, Y.1
  • 34
    • 84855687083 scopus 로고    scopus 로고
    • Signaling mechanisms in cortical axon growth,guidance, and branching
    • Kalil, K., Li, L., Hutchins, B. I. Signaling mechanisms in cortical axon growth,guidance, and branching. Front. Neuroanat. 5, 62 (2011).
    • (2011) Front. Neuroanat. , vol.5 , pp. 62
    • Kalil, K.1    Li, L.2    Hutchins, B.I.3
  • 35
    • 84892710830 scopus 로고    scopus 로고
    • CaMKII: Claiming center stage in postsynaptic function andorganization
    • Hell, J. W. CaMKII: claiming center stage in postsynaptic function andorganization. Neuron 81, 249-265 (2014).
    • (2014) Neuron , vol.81 , pp. 249-265
    • Hell, J.W.1
  • 36
    • 84925012440 scopus 로고    scopus 로고
    • Signaling to the microtubulecytoskeleton: An unconventional role for CaMKII
    • McVicker, D. P., Millette, M. M., Dent, E. W. Signaling to the microtubulecytoskeleton: an unconventional role for CaMKII. Dev. Neurobiol. 75, 423-434(2015).
    • (2015) Dev. Neurobiol. , vol.75 , pp. 423-434
    • McVicker, D.P.1    Millette, M.M.2    Dent, E.W.3
  • 38
    • 84909965363 scopus 로고    scopus 로고
    • Emerging role of CaMKII in neuropsychiatric disease
    • Robison, A. J. Emerging role of CaMKII in neuropsychiatric disease. TrendsNeurosci. 37, 653-662 (2014).
    • (2014) TrendsNeurosci. , vol.37 , pp. 653-662
    • Robison, A.J.1
  • 39
    • 77954887739 scopus 로고    scopus 로고
    • Sleep and circadian rhythmdisruption in psychiatric and neurodegenerative disease
    • Wulff, K., Gatti, S., Wettstein, J. G., Foster, R. G. Sleep and circadian rhythmdisruption in psychiatric and neurodegenerative disease. Nat. Rev. Neurosci.11, 589-599 (2010).
    • (2010) Nat. Rev. Neurosci. , vol.11 , pp. 589-599
    • Wulff, K.1    Gatti, S.2    Wettstein, J.G.3    Foster, R.G.4
  • 40
    • 81255201478 scopus 로고    scopus 로고
    • Depression scores associate with chronotype and socialjetlag in a rural population
    • Levandovski, R., et al. Depression scores associate with chronotype and socialjetlag in a rural population. Chronobiol. Int. 28, 771-778 (2011).
    • (2011) Chronobiol. Int. , vol.28 , pp. 771-778
    • Levandovski, R.1
  • 41
    • 84926488595 scopus 로고    scopus 로고
    • Circadian clock dysfunction and psychiatricdisease: Could fruit flies have a say Front
    • Zordan, M. A., Sandrelli, F. Circadian clock dysfunction and psychiatricdisease: could fruit flies have a say Front. Neurol. 6, 80 (2015).
    • (2015) Neurol. , vol.6 , pp. 80
    • Zordan, M.A.1    Sandrelli, F.2
  • 42
    • 84937574674 scopus 로고    scopus 로고
    • Chronic stress induces brain region-specific alterations ofmolecular rhythms that correlate with depression-like behavior in mice.Biol
    • Logan, R. W., et al. Chronic stress induces brain region-specific alterations ofmolecular rhythms that correlate with depression-like behavior in mice.Biol. Psychiatry 78, 249-258 (2015).
    • (2015) Psychiatry , vol.78 , pp. 249-258
    • Logan, R.W.1
  • 43
    • 81855174762 scopus 로고    scopus 로고
    • The monarch butterflygenome yields insights into long-distance migration
    • Zhan, S., Merlin, C., Boore, J. L., Reppert, S. M. The monarch butterflygenome yields insights into long-distance migration. Cell 147, 1171-1185(2011).
    • (2011) Cell , vol.147 , pp. 1171-1185
    • Zhan, S.1    Merlin, C.2    Boore, J.L.3    Reppert, S.M.4
  • 44
    • 41949090434 scopus 로고    scopus 로고
    • The genome of the model beetle and pest Triboliumcastaneum
    • Richards, S., et al. The genome of the model beetle and pest Triboliumcastaneum. Nature 452, 949-955 (2008).
    • (2008) Nature , vol.452 , pp. 949-955
    • Richards, S.1
  • 45
    • 33750460281 scopus 로고    scopus 로고
    • Insightsinto social insects from the genome of the honeybee Apis mellifera
    • Honeybee Genome Sequencing Consortium
    • Weinstock, G. M., et al.; Honeybee Genome Sequencing Consortium. Insightsinto social insects from the genome of the honeybee Apis mellifera. Nature 443,931-949 (2006).
    • (2006) Nature , vol.443 , pp. 931-949
    • Weinstock, G.M.1
  • 46
    • 0032007661 scopus 로고    scopus 로고
    • Preparation and purification of DNAfrom insects for AFLP analysis
    • Reineke, A., Karlovsky, P., Zebitz, C. P. W. Preparation and purification of DNAfrom insects for AFLP analysis. Insect Mol. Biol. 7, 95-99 (1998).
    • (1998) Insect Mol. Biol. , vol.7 , pp. 95-99
    • Reineke, A.1    Karlovsky, P.2    Zebitz, C.P.W.3
  • 47
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adapter sequences from high-throughputsequencing reads
    • Martin, M. Cutadapt removes adapter sequences from high-throughputsequencing reads. EMBnet.journal 17, 10-12 (2011).
    • (2011) EMBnet.journal , vol.17 , pp. 10-12
    • Martin, M.1
  • 49
    • 84885997727 scopus 로고    scopus 로고
    • Next Gen Map: Fast andaccurate read mapping in highly polymorphic genomes
    • Sedlazeck, F. J., Rescheneder, P., von Haeseler, A. NextGenMap: fast andaccurate read mapping in highly polymorphic genomes. Bioinformatics 29,2790-2791 (2013).
    • (2013) Bioinformatics , vol.29 , pp. 2790-2791
    • Sedlazeck, F.J.1    Rescheneder, P.2    Von Haeseler, A.3
  • 50
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H., Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 51
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assemblyusing de Bruijn graphs
    • Zerbino, D. R., Birney, E. Velvet: algorithms for de novo short read assemblyusing de Bruijn graphs. Genome Res. 18, 821-829 (2008).
    • (2008) Genome Res. , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 54
    • 84861430321 scopus 로고    scopus 로고
    • Scaffolder-software for manual genomescaffolding
    • Barton, M. D., Barton, H. A. Scaffolder-software for manual genomescaffolding. Source Code Biol. Med. 7, 4 (2012).
    • (2012) Source Code Biol. Med. , vol.7 , pp. 4
    • Barton, M.D.1    Barton, H.A.2
  • 55
    • 84862591603 scopus 로고    scopus 로고
    • Toward almost closed genomes with GapFiller
    • Boetzer, M., Pirovano, W. Toward almost closed genomes with GapFiller.Genome Biol. 13, R56 (2012).
    • (2012) Genome Biol. , vol.13 , pp. R56
    • Boetzer, M.1    Pirovano, W.2
  • 57
    • 79960264362 scopus 로고    scopus 로고
    • Full-length transcriptome assembly from RNA-Seq datawithout a reference genome
    • Grabherr, M. G., et al. Full-length transcriptome assembly from RNA-Seq datawithout a reference genome. Nat. Biotechnol. 29, 644-652 (2011).
    • (2011) Nat. Biotechnol. , vol.29 , pp. 644-652
    • Grabherr, M.G.1
  • 58
    • 84055178433 scopus 로고    scopus 로고
    • MAKER2: An annotation pipeline and genome-databasemanagement tool for second-generation genome projects
    • Holt, C., Yandell, M. MAKER2: an annotation pipeline and genome-databasemanagement tool for second-generation genome projects. BMC Bioinformatics12, 491 (2011).
    • (2011) BMC Bioinformatics , vol.12 , pp. 491
    • Holt, C.1    Yandell, M.2
  • 59
    • 2942527473 scopus 로고    scopus 로고
    • Gene prediction with a hidden Markov model and anew intron submodel
    • Stanke, M., Waack, S. Gene prediction with a hidden Markov model and anew intron submodel. Bioinformatics 19 (Suppl 2), ii215-ii225 (2003).
    • (2003) Bioinformatics , vol.19 , pp. 11215-11225
    • Stanke, M.1    Waack, S.2
  • 60
    • 2942544417 scopus 로고    scopus 로고
    • Gene finding in novel genomes
    • Korf, I. Gene finding in novel genomes. BMC Bioinformatics 5, 59 (2004).
    • (2004) BMC Bioinformatics , vol.5 , pp. 59
    • Korf, I.1
  • 61
    • 69649109364 scopus 로고    scopus 로고
    • Circos: An information aesthetic for comparative genomics
    • Krzywinski, M., et al. Circos: an information aesthetic for comparative genomics.Genome Res. 19, 1639-1645 (2009).
    • (2009) Genome Res. , vol.19 , pp. 1639-1645
    • Krzywinski, M.1
  • 62
    • 84866440781 scopus 로고    scopus 로고
    • DELLY: Structural variant discovery by integrated paired-endand split-read analysis
    • Rausch, T., et al. DELLY: structural variant discovery by integrated paired-endand split-read analysis. Bioinformatics 28, i333-i339 (2012).
    • (2012) Bioinformatics , vol.28 , pp. 1333-1339
    • Rausch, T.1
  • 63
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map format and SAMtools
    • Li, H., et al. The sequence alignment/map format and SAMtools. Bioinformatics25, 2078-2079 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 64
    • 77956295988 scopus 로고    scopus 로고
    • The genome analysis toolkit: A MapReduce framework foranalyzing next-generation DNA sequencing data
    • McKenna, A., et al. The genome analysis toolkit: a MapReduce framework foranalyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303(2010).
    • (2010) Genome Res. , vol.20 , pp. 1297-1303
    • McKenna, A.1
  • 65
    • 83355175374 scopus 로고    scopus 로고
    • PoPoolation2: Identifyingdifferentiation between populations using sequencing of pooled DNA samples(Pool-Seq)
    • Kofler, R., Pandey, R. V., Schlötterer, C. PoPoolation2: identifyingdifferentiation between populations using sequencing of pooled DNA samples(Pool-Seq). Bioinformatics 27, 3435-3436 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 3435-3436
    • Kofler, R.1    Pandey, R.V.2    Schlötterer, C.3
  • 66
    • 84889398472 scopus 로고    scopus 로고
    • John Wiley Sons Ltd
    • Crawley, M. J. The R Book. (John Wiley, Sons Ltd., 2007).
    • (2007) The R Book
    • Crawley, M.J.1
  • 67
    • 77954560739 scopus 로고    scopus 로고
    • Strong geneticdifferentiation and postglacial origin of populations in the marine midge Cluniomarinus (Chironomidae, Diptera)
    • Kaiser, T. S., Neumann, D., Heckel, D. G., Berendonk, T. U. Strong geneticdifferentiation and postglacial origin of populations in the marine midge Cluniomarinus (Chironomidae, Diptera). Mol. Ecol. 19, 2845-2857 (2010).
    • (2010) Mol. Ecol. , vol.19 , pp. 2845-2857
    • Kaiser, T.S.1    Neumann, D.2    Heckel, D.G.3    Berendonk, T.U.4
  • 68
    • 79251557454 scopus 로고    scopus 로고
    • PoPoolation: A toolbox for population genetic analysis of nextgeneration sequencing data from pooled individuals
    • Kofler, R., et al. PoPoolation: a toolbox for population genetic analysis of nextgeneration sequencing data from pooled individuals. PLoS One 6, e15925 (2011).
    • (2011) PLoS One , vol.6 , pp. 15925
    • Kofler, R.1
  • 69
    • 84869059015 scopus 로고    scopus 로고
    • LDx: Estimation of linkagedisequilibrium from high-throughput pooled resequencing data
    • Feder, A. F., Petrov, D. A., Bergland, A. O. LDx: estimation of linkagedisequilibrium from high-throughput pooled resequencing data. PLoS One 7,e48588 (2012).
    • (2012) PLoS One , vol.7 , pp. 48588
    • Feder, A.F.1    Petrov, D.A.2    Bergland, A.O.3
  • 70
    • 84862506964 scopus 로고    scopus 로고
    • A program for annotating and predicting the effects of singlenucleotide polymorphisms SnpEff: SNPs in the genome of Drosophilamelanogaster strain w1118; Iso-2; iso-3
    • Cingolani, P., et al. A program for annotating and predicting the effects of singlenucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophilamelanogaster strain w1118; iso-2; iso-3. Fly (Austin) 6, 80-92 (2012).
    • (2012) Fly (Austin) , vol.6 , pp. 80-92
    • Cingolani, P.1
  • 71
    • 84901321219 scopus 로고    scopus 로고
    • SNP2GO: Functionalanalysis of genome-wide association studies
    • Szkiba, D., Kapun, M., von Haeseler, A., Gallach, M. SNP2GO: functionalanalysis of genome-wide association studies. Genetics 197, 285-289 (2014).
    • (2014) Genetics , vol.197 , pp. 285-289
    • Szkiba, D.1    Kapun, M.2    Von Haeseler, A.3    Gallach, M.4
  • 72
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data usingreal-time quantitative PCR and the 2(-C(T)) method
    • Livak, K. J., Schmittgen, T. D. Analysis of relative gene expression data usingreal-time quantitative PCR and the 2(-C(T)) method. Methods 25, 402-408(2001).
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 73
    • 0002294347 scopus 로고
    • A simple sequentially rejective multiple test procedure
    • Holm, S. A simple sequentially rejective multiple test procedure. Scand. J. Stat.6, 65-70 (1979).
    • (1979) Scand. J. Stat. , vol.6 , pp. 65-70
    • Holm, S.1
  • 74
    • 84901229145 scopus 로고    scopus 로고
    • Rhythmic U2af26 alternative splicing controls PERIOD1stability and the circadian clock in mice
    • Preußner, M., et al. Rhythmic U2af26 alternative splicing controls PERIOD1stability and the circadian clock in mice. Mol. Cell 54, 651-662 (2014).
    • (2014) Mol. Cell , vol.54 , pp. 651-662
    • Preußner, M.1
  • 75
    • 0017672543 scopus 로고
    • An automatic device for the investigation of the rhythmicemergence pattern of Clunio marinus
    • Honegger, H. W. An automatic device for the investigation of the rhythmicemergence pattern of Clunio marinus. Int. J. Chronobiol. 4, 217-221 (1977).
    • (1977) Int. J. Chronobiol. , vol.4 , pp. 217-221
    • Honegger, H.W.1
  • 77
    • 0031349761 scopus 로고    scopus 로고
    • Evolution and phylogeny of the Diptera: A molecularphylogenetic analysis using 28S rDNA sequences
    • Friedrich, M., Tautz, D. Evolution and phylogeny of the Diptera: a molecularphylogenetic analysis using 28S rDNA sequences. Syst. Biol. 46, 674-698 (1997).
    • (1997) Syst. Biol. , vol.46 , pp. 674-698
    • Friedrich, M.1    Tautz, D.2
  • 78
    • 0037020194 scopus 로고    scopus 로고
    • Comparative genome and proteome analysis of Anophelesgambiae and Drosophila melanogaster
    • Zdobnov, E. M., et al. Comparative genome and proteome analysis of Anophelesgambiae and Drosophila melanogaster. Science 298, 149-159 (2002).
    • (2002) Science , vol.298 , pp. 149-159
    • Zdobnov, E.M.1


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