메뉴 건너뛰기




Volumn 2, Issue 2, 2014, Pages

Draft genome sequence of the Sulfolobales archaeon AZ1, obtained through metagenomic analysis of a Mexican hot spring

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84999036881     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00164-14     Document Type: Article
Times cited : (12)

References (31)
  • 1
    • 0141939278 scopus 로고
    • Order III. Sulfolobales ord. nov. family Sulfolobaceae fam. nov
    • Staley JT, Bryant MP, Pfennig N, Holt JG, López-Casillas F, Bai DH, Luo X, PapeME(ed) Williams & Wilkins, Baltimore, MD, 1st ed
    • Stetter KO, López-Casillas F, Bai DH, Luo X, Pape ME. 1989. Order III. Sulfolobales ord. nov. family Sulfolobaceae fam. nov., p 2250-2251. In Staley JT, Bryant MP, Pfennig N, Holt JG, López-Casillas F, Bai DH, Luo X, PapeME(ed), Bergey's manual of systematic bacteriology, vol 3, 1st ed. Williams & Wilkins, Baltimore, MD.
    • (1989) Bergey's manual of systematic bacteriology , vol.3 , pp. 2250-2251
    • Stetter, K.O.1    López-Casillas, F.2    Bai, D.H.3    Luo, X.4    Pape, M.E.5
  • 2
    • 79958073627 scopus 로고    scopus 로고
    • Model organisms for genetics in the domain Archaea: methanogens, halophiles, Thermococcales and Sulfolobales
    • Leigh JA, Albers SV, Atomi H, Allers T. 2011. Model organisms for genetics in the domain Archaea: methanogens, halophiles, Thermococcales and Sulfolobales. FEMS Microbiol. Rev. 35:577-608. http://dx.doi.org/10.1111/j.1574-6976.2011.00265.x.
    • (2011) FEMS Microbiol. Rev , vol.35 , pp. 577-608
    • Leigh, J.A.1    Albers, S.V.2    Atomi, H.3    Allers, T.4
  • 3
    • 0015275944 scopus 로고
    • Sulfolobus: a new genus of sulfur-oxidizing bacteria living at low pH and high temperature
    • Brock TD, Brock KM, Belly RT, Weiss RL. 1972. Sulfolobus: a new genus of sulfur-oxidizing bacteria living at low pH and high temperature. Arch. Mikrobiol. 84:54-68. http://dx.doi.org/10.1007/BF00408082.
    • (1972) Arch. Mikrobiol , vol.84 , pp. 54-68
    • Brock, T.D.1    Brock, K.M.2    Belly, R.T.3    Weiss, R.L.4
  • 4
    • 0023029613 scopus 로고
    • Acidianus infernus gen. nov., sp. nov., and Acidianus brierleyi comb. nov.: facultatively aerobic, extremely acidophilic thermophilic sulfur-metabolizing archaebacteria
    • Segerer A, Neuner AM, Kristjansson JK, Stetter KO. 1986. Acidianus infernus gen. nov., sp. nov., and Acidianus brierleyi comb. nov.: facultatively aerobic, extremely acidophilic thermophilic sulfur-metabolizing archaebacteria. Int. J. Syst. Bacteriol. 36:559-564. http://dx.doi.org/10.109 9/00207713-36-4-559.
    • (1986) Int. J. Syst. Bacteriol , vol.36 , pp. 559-564
    • Segerer, A.1    Neuner, A.M.2    Kristjansson, J.K.3    Stetter, K.O.4
  • 5
    • 0001960079 scopus 로고
    • Metallosphaera sedula gen. nov. and sp. nov. represents a new genus of aerobic, metalmobilizing, thermoacidophilic archaebacteria
    • Huber G, Spinnler C, Gambacorta A, Stetter KO. 1989. Metallosphaera sedula gen. nov. and sp. nov. represents a new genus of aerobic, metalmobilizing, thermoacidophilic archaebacteria. Syst. Appl. Microbiol. 12: 38-47. http://dx.doi.org/10.1016/S0723-2020(89)80038-4.
    • (1989) Syst. Appl. Microbiol , vol.12 , pp. 38-47
    • Huber, G.1    Spinnler, C.2    Gambacorta, A.3    Stetter, K.O.4
  • 6
    • 0025938528 scopus 로고
    • Stygiolobus azoricus gen. nov., sp. nov. represents a novel genus of anaerobic, extremely thermoacidophilic archaebacteria of the order Sulfolobales
    • Segerer AH, Trincone A, Gahrtz M, Stetter KO. 1991. Stygiolobus azoricus gen. nov., sp. nov. represents a novel genus of anaerobic, extremely thermoacidophilic archaebacteria of the order Sulfolobales. Int. J. Syst. Bacteriol. 41:495-501. http://dx.doi.org/10.1099/00207713-41-4-495.
    • (1991) Int. J. Syst. Bacteriol , vol.41 , pp. 495-501
    • Segerer, A.H.1    Trincone, A.2    Gahrtz, M.3    Stetter, K.O.4
  • 7
    • 0031777095 scopus 로고    scopus 로고
    • Sulfurisphaera ohwakuensis gen. nov., sp. nov., a novel extremely thermophilic acidophile of the order Sulfolobales
    • Kurosawa N, Itoh YH, Iwai T, Sugai A, Uda I, Kimura N, Horiuchi T, Itoh T. 1998. Sulfurisphaera ohwakuensis gen. nov., sp. nov., a novel extremely thermophilic acidophile of the order Sulfolobales. Int. J. Syst. Bacteriol. 48(Pt 2):451-456. http://dx.doi.org/10.1099/00207713-48-2-451.
    • (1998) Int. J. Syst. Bacteriol , vol.48 , pp. 451-456
    • Kurosawa, N.1    Itoh, Y.H.2    Iwai, T.3    Sugai, A.4    Uda, I.5    Kimura, N.6    Horiuchi, T.7    Itoh, T.8
  • 14
    • 84863981078 scopus 로고    scopus 로고
    • Genomic evidence of rapid, global-scale gene flow in a Sulfolobus species
    • Mao D, Grogan D. 2012. Genomic evidence of rapid, global-scale gene flow in a Sulfolobus species. ISME J. 6:1613-1616. http://dx.doi.org/10.10 38/ismej.2012.20.
    • (2012) ISME J , vol.6 , pp. 1613-1616
    • Mao, D.1    Grogan, D.2
  • 16
    • 79959371100 scopus 로고    scopus 로고
    • Genomic analysis of Acidianus hospitalis W1 a host for studying crenarchaeal virus and plasmid life cycles
    • You XY, Liu C, Wang SY, Jiang CY, Shah SA, Prangishvili D, She Q, Liu SJ, Garrett RA. 2011. Genomic analysis of Acidianus hospitalis W1 a host for studying crenarchaeal virus and plasmid life cycles. Extremophiles 15:487-497. http://dx.doi.org/10.1007/s00792-011-0379-y.
    • (2011) Extremophiles , vol.15 , pp. 487-497
    • You, X.Y.1    Liu, C.2    Wang, S.Y.3    Jiang, C.Y.4    Shah, S.A.5    Prangishvili, D.6    She, Q.7    Liu, S.J.8    Garrett, R.A.9
  • 17
    • 38949170756 scopus 로고    scopus 로고
    • The genome sequence of the metal-mobilizing, extremely thermoacidophilic archaeon Metallosphaera sedula provides insights into bioleaching-associated metabolism
    • Auernik KS, Maezato Y, Blum PH, Kelly RM. 2008. The genome sequence of the metal-mobilizing, extremely thermoacidophilic archaeon Metallosphaera sedula provides insights into bioleaching-associated metabolism. Appl. Environ. Microbiol. 74:682-692. http://dx.doi.org/10.11 28/AEM.02019-07.
    • (2008) Appl. Environ. Microbiol , vol.74 , pp. 682-692
    • Auernik, K.S.1    Maezato, Y.2    Blum, P.H.3    Kelly, R.M.4
  • 18
    • 79959364251 scopus 로고    scopus 로고
    • Complete genome sequence of Metallosphaera cuprina, a metal sulfide-oxidizing archaeon from a hot spring
    • Liu LJ, You XY, Zheng H, Wang S, Jiang CY, Liu SJ. 2011. Complete genome sequence of Metallosphaera cuprina, a metal sulfide-oxidizing archaeon from a hot spring. J. Bacteriol. 193:3387-3388. http://dx.doi.org/10.1128/JB.05038-11.
    • (2011) J. Bacteriol , vol.193 , pp. 3387-3388
    • Liu, L.J.1    You, X.Y.2    Zheng, H.3    Wang, S.4    Jiang, C.Y.5    Liu, S.J.6
  • 19
    • 79953193433 scopus 로고    scopus 로고
    • Terminal oxidase diversity and function in "Metallosphaera yellowstonensis": gene expression and protein modeling suggest mechanisms of Fe(II) oxidation in the Sulfolobales
    • Kozubal MA, Dlakic M, Macur RE, Inskeep WP. 2011. Terminal oxidase diversity and function in "Metallosphaera yellowstonensis": gene expression and protein modeling suggest mechanisms of Fe(II) oxidation in the Sulfolobales. Appl. Environ. Microbiol. 77:1844-1853. http://dx.doi.org/10.1128/AEM.01646-10.
    • (2011) Appl. Environ. Microbiol , vol.77 , pp. 1844-1853
    • Kozubal, M.A.1    Dlakic, M.2    Macur, R.E.3    Inskeep, W.P.4
  • 21
    • 84876741070 scopus 로고    scopus 로고
    • Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park
    • Podar M, Makarova KS, Graham DE, Wolf YI, Koonin EV, Reysenbach AL. 2013. Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park. Biol. Direct 8:9. http://dx.doi.org/1 0.1186/1745-6150-8-9.
    • (2013) Biol. Direct , vol.8 , pp. 9
    • Podar, M.1    Makarova, K.S.2    Graham, D.E.3    Wolf, Y.I.4    Koonin, E.V.5    Reysenbach, A.L.6
  • 22
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829. http://dx.doi.org/10.1101/gr.074492.107.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 23
    • 84995977104 scopus 로고    scopus 로고
    • Genome sequence of a novel archaeal rudivirus recovered from a Mexican hot spring
    • Servín-Garcidueñas LE, Peng X, Garrett RA, Martínez-Romero E. 2013. Genome sequence of a novel archaeal rudivirus recovered from a Mexican hot spring. Genome Announc. 1(1):e00040-12. http://dx.doi.org/10.1128/genomeA.00040-12.
    • (2013) Genome Announc , vol.1 , Issue.1
    • Servín-Garcidueñas, L.E.1    Peng, X.2    Garrett, R.A.3    Martínez-Romero, E.4
  • 24
    • 84995950937 scopus 로고    scopus 로고
    • Genome sequence of a novel archaeal fusellovirus assembled from the metagenome of a Mexican hot spring
    • Servín-Garcidueñas LE, Peng X, Garrett RA, Martínez-Romero E. 2013. Genome sequence of a novel archaeal fusellovirus assembled from the metagenome of a Mexican hot spring. Genome Announc. 1(2):e00164-13. http://dx.doi.org/10.1128/genomeA.00164-13.
    • (2013) Genome Announc , vol.1 , Issue.2
    • Servín-Garcidueñas, L.E.1    Peng, X.2    Garrett, R.A.3    Martínez-Romero, E.4
  • 25
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li H, Ruan J, Durbin R. 2008. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res. 18:1851-1858. http://dx.doi.org/10.1101/gr.078212.108.
    • (2008) Genome Res , vol.18 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 26
    • 77952891045 scopus 로고    scopus 로고
    • Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs
    • Auch AF, Klenk HP, Göker M. 2010. Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs. Stand. Genomic Sci. 2:142-148. http://dx.doi.org/10.4056/sigs.541 628.
    • (2010) Stand. Genomic Sci , vol.2 , pp. 142-148
    • Auch, A.F.1    Klenk, H.P.2    Göker, M.3
  • 27
    • 77952891913 scopus 로고    scopus 로고
    • Digital DNA-DNA hybridization for microbial species delineation by means of genome-togenome sequence comparison
    • Auch AF, von Jan M, Klenk HP, Göker M. 2010. Digital DNA-DNA hybridization for microbial species delineation by means of genome-togenome sequence comparison. Stand. Genomic Sci. 2:117-134. http://dx.doi.org/10.4056/sigs.531120.
    • (2010) Stand. Genomic Sci , vol.2 , pp. 117-134
    • Auch, A.F.1    von Jan, M.2    Klenk, H.P.3    Göker, M.4
  • 28
    • 84874011652 scopus 로고    scopus 로고
    • Genome sequence-based species delimitation with confidence intervals and improved distance functions
    • Meier-KolthoffJP, Auch AF, Klenk HP, Göker M. 2013. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 14:60. http://dx.doi.org/10.1186/1471-2105-14-60.
    • (2013) BMC Bioinformatics , vol.14 , pp. 60
    • Meier-Kolthoff, J.P.1    Auch, A.F.2    Klenk, H.P.3    Göker, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.