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Volumn 2, Issue 1, 2010, Pages 142-148

Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs

Author keywords

BLAST; GBDP; Genomics; GGDC web server; Microbial taxonomy; MUMmer; Phylogeny; Species de lineation

Indexed keywords

PROKARYOTA;

EID: 77952891045     PISSN: 19443277     EISSN: None     Source Type: Journal    
DOI: 10.4056/sigs.541628     Document Type: Article
Times cited : (484)

References (12)
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    • Auch, A.F.1    von Jan, M.2    Klenk, H.P.3    Göker, M.4
  • 3
    • 0036226603 scopus 로고    scopus 로고
    • BLAT the BLAST-like alignment tool
    • PubMed
    • Kent WJ. BLAT the BLAST-like alignment tool. Genome Res 2002; 12: 656-664. PubMed
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 6
    • 38849135019 scopus 로고    scopus 로고
    • Choosing BLAST options for better detection of orthologs as reciprocal best hits
    • PubMed doi:10.1093/bioinformatics/btm585
    • Moreno-Hagelsieb G, Latimer K. Choosing BLAST options for better detection of orthologs as reciprocal best hits. Bioinformatics 2008; 24: 319-324 PubMed doi:10.1093/bioinformatics/btm585
    • (2008) Bioinformatics , vol.24 , pp. 319-324
    • Moreno-Hagelsieb, G.1    Latimer, K.2
  • 9
    • 33748696038 scopus 로고    scopus 로고
    • Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences
    • PubMed doi:10.1186/1471-2105-7-350
    • Auch AF, Henz SR, Holland BR, Göker M. Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences. BMC Bioinformatics 2006; 7: 350 PubMed doi:10.1186/1471-2105-7-350
    • (2006) BMC Bioinformatics , vol.7 , pp. 350
    • Auch, A.F.1    Henz, S.R.2    Holland, B.R.3    Göker, M.4
  • 10
    • 84860489569 scopus 로고    scopus 로고
    • Phylogenies from whole genomes: Methodological update within a distance-based framework
    • Available online
    • Auch AF, Henz SR, Göker M. Phylogenies from whole genomes: Methodological update within a distance-based framework. German Conference on Bioinformatics, 2006. Available online, urn:nbn:de:bsz:21-opus-34178
    • (2006) German Conference On Bioinformatics
    • Auch, A.F.1    Henz, S.R.2    Göker, M.3
  • 12
    • 84860340139 scopus 로고    scopus 로고
    • En route to a genome-based classification of Archaea and Bacteria?
    • Submitted, PubMed
    • Klenk HP, Göker M. En route to a genome-based classification of Archaea and Bacteria? Syst Appl Microbiol (Submitted) PubMed
    • Syst Appl Microbiol
    • Klenk, H.P.1    Göker, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.