-
5
-
-
45449103839
-
CD1d-restricted iNKT cells, the "swiss-Army knife" of the immune system
-
Matsuda, J. L., T. Mallevaey, J. Scott-Browne, and L. Gapin. 2008. CD1d-restricted iNKT cells, the "Swiss-Army knife" of the immune system. Curr. Opin. Immunol. 20: 358-368.
-
(2008)
Curr. Opin. Immunol.
, vol.20
, pp. 358-368
-
-
Matsuda, J.L.1
Mallevaey, T.2
Scott-Browne, J.3
Gapin, L.4
-
6
-
-
84938545292
-
The extended family of CD1d-restricted NKT cells: Sifting through a mixed bag of TCRs, antigens, and functions
-
Macho-Fernandez, E., and M. Brigl. 2015. The extended family of CD1d-restricted NKT cells: sifting through a mixed bag of TCRs, antigens, and functions. Front. Immunol. 6: 362.
-
(2015)
Front. Immunol.
, vol.6
, pp. 362
-
-
MacHo-Fernandez, E.1
Brigl, M.2
-
7
-
-
0034605065
-
Tracking the response of natural killer T cells to a glycolipid antigen using CD1d tetramers
-
Matsuda, J. L., O. V. Naidenko, L. Gapin, T. Nakayama, M. Taniguchi, C. R. Wang, Y. Koezuka, and M. Kronenberg. 2000. Tracking the response of natural killer T cells to a glycolipid antigen using CD1d tetramers. J. Exp. Med. 192: 741-754.
-
(2000)
J. Exp. Med.
, vol.192
, pp. 741-754
-
-
Matsuda, J.L.1
Naidenko, O.V.2
Gapin, L.3
Nakayama, T.4
Taniguchi, M.5
Wang, C.R.6
Koezuka, Y.7
Kronenberg, M.8
-
8
-
-
0034608345
-
In vivo identification of glycolipid antigen-specific T cells using fluorescent CD1d tet-ramers
-
Benlagha, K., A. Weiss, A. Beavis, L. Teyton, and A. Bendelac. 2000. In vivo identification of glycolipid antigen-specific T cells using fluorescent CD1d tet-ramers. J. Exp. Med. 191: 1895-1903.
-
(2000)
J. Exp. Med.
, vol.191
, pp. 1895-1903
-
-
Benlagha, K.1
Weiss, A.2
Beavis, A.3
Teyton, L.4
Bendelac, A.5
-
9
-
-
69249095385
-
Multiple tissue-specific isoforms of sulfatide activate CD1d-restricted type II NKT cells
-
Blomqvist, M., S. Rhost, S. Teneberg, L. Löfbom, T. Osterbye, M. Brigl, J.-E. Ma°nsson, and S. L. Cardell. 2009. Multiple tissue-specific isoforms of sulfatide activate CD1d-restricted type II NKT cells. Eur. J. Immunol. 39: 1726-1735.
-
(2009)
Eur. J. Immunol.
, vol.39
, pp. 1726-1735
-
-
Blomqvist, M.1
Rhost, S.2
Teneberg, S.3
Löfbom, L.4
Osterbye, T.5
Brigl, M.6
Mansson, J.-E.7
Cardell, S.L.8
-
10
-
-
1842682026
-
Prevention of autoimmunity by targeting a distinct, noninvariant CD1d-reactive T cell population reactive to sulfatide
-
Jahng, A., I. Maricic, C. Aguilera, S. Cardell, R. C. Halder, and V. Kumar. 2004. Prevention of autoimmunity by targeting a distinct, noninvariant CD1d-reactive T cell population reactive to sulfatide. J. Exp. Med. 199: 947-957.
-
(2004)
J. Exp. Med.
, vol.199
, pp. 947-957
-
-
Jahng, A.1
Maricic, I.2
Aguilera, C.3
Cardell, S.4
Halder, R.C.5
Kumar, V.6
-
11
-
-
84865414943
-
Recognition of CD1d-sulfatide mediated by a type II natural killer T cell antigen receptor
-
Patel, O., D. G. Pellicci, S. Gras, M. L. Sandoval-Romero, A. P. Uldrich, T. Mallevaey, A. J. Clarke, J. Le Nours, A. Theodossis, S. L. Cardell, et al. 2012. Recognition of CD1d-sulfatide mediated by a type II natural killer T cell antigen receptor. Nat. Immunol. 13: 857-863.
-
(2012)
Nat. Immunol.
, vol.13
, pp. 857-863
-
-
Patel, O.1
Pellicci, D.G.2
Gras, S.3
Sandoval-Romero, M.L.4
Uldrich, A.P.5
Mallevaey, T.6
Clarke, A.J.7
Le Nours, J.8
Theodossis, A.9
Cardell, S.L.10
-
12
-
-
84873208755
-
Recognition of microbial and mammalian phospholipid antigens by NKT cells with diverse TCRs
-
Tatituri, R. V. V., G. F. M. Watts, V. Bhowruth, N. Barton, A. Rothchild, F.-F. Hsu, C. F. Almeida, L. R. Cox, L. Eggeling, S. Cardell, et al. 2013. Recognition of microbial and mammalian phospholipid antigens by NKT cells with diverse TCRs. Proc. Natl. Acad. Sci. USA 110: 1827-1832.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 1827-1832
-
-
Tatituri, R.V.V.1
Watts, G.F.M.2
Bhowruth, V.3
Barton, N.4
Rothchild, A.5
Hsu, F.-F.6
Almeida, C.F.7
Cox, L.R.8
Eggeling, L.9
Cardell, S.10
-
13
-
-
84941794113
-
Identification of a potent microbial lipid antigen for diverse NKT cells
-
Wolf, B. J., R. V. V. Tatituri, C. F. Almeida, J. Le Nours, V. Bhowruth, D. Johnson, A. P. Uldrich, F. F. Hsu, M. Brigl, G. S. Besra, et al. 2015. Identification of a potent microbial lipid antigen for diverse NKT cells. J. Immunol. 195: 2540-2551.
-
(2015)
J. Immunol.
, vol.195
, pp. 2540-2551
-
-
Wolf, B.J.R.1
Tatituri, V.V.2
Almeida, C.F.3
Le Nours, J.4
Bhowruth, V.5
Johnson, D.6
Uldrich, A.P.7
Hsu, F.F.8
Brigl, M.9
Besra, G.S.10
-
15
-
-
0034235440
-
Activation of natural killer T cells by a-galactosylceramide in the presence of CD1d provides protection against colitis in mice
-
Saubermann, L. J., P. Beck, Y. P. De Jong, R. S. Pitman, M. S. Ryan, H. S. Kim, M. Exley, S. Snapper, S. P. Balk, S. J. Hagen, et al. 2000. Activation of natural killer T cells by a-galactosylceramide in the presence of CD1d provides protection against colitis in mice. Gastroenterology 119: 119-128.
-
(2000)
Gastroenterology
, vol.119
, pp. 119-128
-
-
Saubermann, L.J.1
Beck, P.2
De Jong, Y.P.3
Pitman, R.S.4
Ryan, M.S.5
Kim, H.S.6
Exley, M.7
Snapper, S.8
Balk, S.P.9
Hagen, S.J.10
-
16
-
-
13944264346
-
Single dose of OCH improves mucosal T helper type 1/T helper type 2 cytokine balance and prevents experimental colitis in the presence of va14 natural killer T cells in mice
-
Ueno, Y., S. Tanaka, M. Sumii, S. Miyake, S. Tazuma, M. Taniguchi, T. Yamamura, and K. Chayama. 2005. Single dose of OCH improves mucosal T helper type 1/T helper type 2 cytokine balance and prevents experimental colitis in the presence of va14 natural killer T cells in mice. Inflamm. Bowel Dis. 11: 35-41.
-
(2005)
Inflamm. Bowel Dis.
, vol.11
, pp. 35-41
-
-
Ueno, Y.1
Tanaka, S.2
Sumii, M.3
Miyake, S.4
Tazuma, S.5
Taniguchi, M.6
Yamamura, T.7
Chayama, K.8
-
17
-
-
84874056674
-
IL-9-producing invariant NKT cells protect against DSS-induced colitis in an IL-4-dependent manner
-
Kim, H. S., and D. H. Chung. 2013. IL-9-producing invariant NKT cells protect against DSS-induced colitis in an IL-4-dependent manner. Mucosal Immunol. 6: 347-357.
-
(2013)
Mucosal Immunol.
, vol.6
, pp. 347-357
-
-
Kim, H.S.1
Chung, D.H.2
-
18
-
-
0036850908
-
Oxazolone colitis, a Th2 colitis model resembling ulcerative colitis, is mediated by IL-13-producing NK-T cells
-
Heller, F., I. J. Fuss, E. E. Nieuwenhuis, R. S. Blumberg, and W. Strober. 2002. Oxazolone colitis, a Th2 colitis model resembling ulcerative colitis, is mediated by IL-13-producing NK-T cells. Immunity 17: 629-638.
-
(2002)
Immunity
, vol.17
, pp. 629-638
-
-
Heller, F.1
Fuss, I.J.2
Nieuwenhuis, E.E.3
Blumberg, R.S.4
Strober, W.5
-
19
-
-
0037911660
-
Essential role of NKT cells producing IL-4 and IL-13 in the development of allergen-induced airway hyperreactivity
-
Akbari, O., P. Stock, E. Meyer, M. Kronenberg, S. Sidobre, T. Nakayama, M. Taniguchi, M. J. Grusby, R. H. DeKruyff, and D. T. Umetsu. 2003. Essential role of NKT cells producing IL-4 and IL-13 in the development of allergen-induced airway hyperreactivity. Nat. Med. 9: 582-588.
-
(2003)
Nat. Med.
, vol.9
, pp. 582-588
-
-
Akbari, O.1
Stock, P.2
Meyer, E.3
Kronenberg, M.4
Sidobre, S.5
Nakayama, T.6
Taniguchi, M.7
Grusby, M.J.8
Dekruyff, R.H.9
Umetsu, D.T.10
-
20
-
-
84856235126
-
Dysregulation of CD1d-restricted type ii natural killer T cells leads to spontaneous development of colitis in mice
-
Liao, C. M., M. I. Zimmer, S. Shanmuganad, H. T. Yu, S. L. Cardell, and C. R. Wang. 2012. Dysregulation of CD1d-restricted type ii natural killer T cells leads to spontaneous development of colitis in mice. Gastroenterology 142: 326-34.e1-2.
-
(2012)
Gastroenterology
, vol.142
, pp. 32e6-34e12
-
-
Liao, C.M.1
Zimmer, M.I.2
Shanmuganad, S.3
Yu, H.T.4
Cardell, S.L.5
Wang, C.R.6
-
21
-
-
84901296354
-
The mycobiota: Interactions between commensal fungi and the host immune system
-
Underhill, D. M., and I. D. Iliev. 2014. The mycobiota: interactions between commensal fungi and the host immune system. Nat. Rev. Immunol. 14: 405-416.
-
(2014)
Nat. Rev. Immunol.
, vol.14
, pp. 405-416
-
-
Underhill, D.M.1
Iliev, I.D.2
-
22
-
-
84897127283
-
The virome in mammalian physiology and disease
-
Virgin, H. W. 2014. The virome in mammalian physiology and disease. Cell 157: 142-150.
-
(2014)
Cell
, vol.157
, pp. 142-150
-
-
Virgin, H.W.1
-
23
-
-
84861978076
-
Host-gut microbiota metabolic interactions
-
Nicholson, J. K., E. Holmes, J. Kinross, R. Burcelin, G. Gibson, W. Jia, and S. Pettersson. 2012. Host-gut microbiota metabolic interactions. Science 336: 1262-1267.
-
(2012)
Science
, vol.336
, pp. 1262-1267
-
-
Nicholson, J.K.1
Holmes, E.2
Kinross, J.3
Burcelin, R.4
Gibson, G.5
Jia, W.6
Pettersson, S.7
-
24
-
-
79957576718
-
NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis
-
Elinav, E., T. Strowig, A. L. Kau, J. Henao-Mejia, C. A. Thaiss, C. J. Booth, D. R. Peaper, J. Bertin, S. C. Eisenbarth, J. I. Gordon, and R. A. Flavell. 2011. NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis. Cell 145: 745-757.
-
(2011)
Cell
, vol.145
, pp. 745-757
-
-
Elinav, E.1
Strowig, T.2
Kau, A.L.3
Henao-Mejia, J.4
Thaiss, C.A.5
Booth, C.J.6
Peaper, D.R.7
Bertin, J.8
Eisenbarth, S.C.9
Gordon, J.I.10
Flavell, R.A.11
-
25
-
-
84874357602
-
Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity
-
Markle, J. G. M., D. N. Frank, S. Mortin-Toth, C. E. Robertson, L. M. Feazel, U. Rolle-Kampczyk, M. von Bergen, K. D. McCoy, A. J. Macpherson, and J. S. Danska. 2013. Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity. Science 339: 1084-1088.
-
(2013)
Science
, vol.339
, pp. 1084-1088
-
-
Markle, J.G.M.1
Frank, D.N.2
Mortin-Toth, S.3
Robertson, C.E.4
Feazel, L.M.5
Rolle-Kampczyk, U.6
Von Bergen, M.7
McCoy, K.D.8
MacPherson, A.J.9
Danska, J.S.10
-
26
-
-
33845874101
-
An obesity-associated gut microbiome with increased ca-pacity for energy harvest
-
Turnbaugh, P. J., R. E. Ley, M. A. Mahowald, V. Magrini, E. R. Mardis, and J. I. Gordon. 2006. An obesity-associated gut microbiome with increased ca-pacity for energy harvest. Nature 444: 1027-1031.
-
(2006)
Nature
, vol.444
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Mahowald, M.A.3
Magrini, V.4
Mardis, E.R.5
Gordon, J.I.6
-
27
-
-
84931469899
-
Fecal microbiota transplantation induces remission in patients with active ul-cerative colitis in a randomized controlled trial
-
Moayyedi, P., M. G. Surette, P. T. Kim, J. Libertucci, M. Wolfe, C. Onischi, D. Armstrong, J. K. Marshall, Z. Kassam, W. Reinisch, and C. H. Lee. 2015. Fecal microbiota transplantation induces remission in patients with active ul-cerative colitis in a randomized controlled trial. Gastroenterology 149: 102-109.e6.
-
(2015)
Gastroenterology
, vol.149
, pp. 102-102e6
-
-
Moayyedi, P.1
Surette, M.G.2
Kim, P.T.3
Libertucci, J.4
Wolfe, M.5
Onischi, C.6
Armstrong, D.7
Marshall, J.K.8
Kassam, Z.9
Reinisch, W.10
Lee, C.H.11
-
28
-
-
70350343544
-
Induction of intestinal Th17 cells by segmented filamentous bacteria
-
Ivanov, I. I., K. Atarashi, N. Manel, E. L. Brodie, T. Shima, U. Karaoz, D. Wei, K. C. Goldfarb, C. A. Santee, S. V. Lynch, et al. 2009. Induction of intestinal Th17 cells by segmented filamentous bacteria. Cell 139: 485-498.
-
(2009)
Cell
, vol.139
, pp. 485-498
-
-
Ivanov, I.I.1
Atarashi, K.2
Manel, N.3
Brodie, E.L.4
Shima, T.5
Karaoz, U.6
Wei, D.7
Goldfarb, K.C.8
Santee, C.A.9
Lynch, S.V.10
-
29
-
-
85027947787
-
Induction of colonic regulatory T cells by indigenous Clostridium species
-
Atarashi, K., T. Tanoue, T. Shima, A. Imaoka, T. Kuwahara, Y. Momose, G. Cheng, S. Yamasaki, T. Saito, Y. Ohba, et al. 2011. Induction of colonic regulatory T cells by indigenous Clostridium species. Science 331: 337-341.
-
(2011)
Science
, vol.331
, pp. 337-341
-
-
Atarashi, K.1
Tanoue, T.2
Shima, T.3
Imaoka, A.4
Kuwahara, T.5
Momose, Y.6
Cheng, G.7
Yamasaki, S.8
Saito, T.9
Ohba, Y.10
-
30
-
-
84902996531
-
The microbiota regulates neutrophil homeostasis and host resistance to Escherichia coli K1 sepsis in neonatal mice
-
Deshmukh, H. S., Y. Liu, O. R. Menkiti, J. Mei, N. Dai, C. E. O'Leary, P. M. Oliver, J. K. Kolls, J. N. Weiser, and G. S. Worthen. 2014. The microbiota regulates neutrophil homeostasis and host resistance to Escherichia coli K1 sepsis in neonatal mice. Nat. Med. 20: 524-530.
-
(2014)
Nat. Med.
, vol.20
, pp. 524-530
-
-
Deshmukh, H.S.1
Liu, Y.2
Menkiti, O.R.3
Mei, J.4
Dai, N.5
O'Leary, C.E.6
Oliver, P.M.7
Kolls, J.K.8
Weiser, J.N.9
Worthen, G.S.10
-
31
-
-
77949316299
-
+ T cells shape the formation of invariant NKT cells
-
+ T cells shape the formation of invariant NKT cells. J. Immunol. 184: 1218-1226.
-
(2010)
J. Immunol.
, vol.184
, pp. 1218-1226
-
-
Wei, B.1
Wingender, G.2
Fujiwara, D.3
Chen, D.Y.4
McPherson, M.5
Brewer, S.6
Borneman, J.7
Kronenberg, M.8
Braun, J.9
-
32
-
-
84864283284
-
Intestinal microbes affect pheno-types and functions of invariant natural killer T cells in mice
-
Wingender, G., D. Stepniak, P. Krebs, L. Lin, S. McBride, B. Wei, J. Braun, S. K. Mazmanian, and M. Kronenberg. 2012. Intestinal microbes affect pheno-types and functions of invariant natural killer T cells in mice. Gastroenterology 143: 418-428.
-
(2012)
Gastroenterology
, vol.143
, pp. 418-428
-
-
Wingender, G.1
Stepniak, D.2
Krebs, P.3
Lin, L.4
McBride, S.5
Wei, B.6
Braun, J.7
Mazmanian, S.K.8
Kronenberg, M.9
-
33
-
-
84860216630
-
Microbial exposure during early life has persistent effects on natural killer T cell function
-
Olszak, T., D. An, S. Zeissig, M. P. Vera, J. Richter, A. Franke, J. N. Glickman, R. Siebert, R. M. Baron, D. L. Kasper, and R. S. Blumberg. 2012. Microbial exposure during early life has persistent effects on natural killer T cell function. Science 336: 489-493.
-
(2012)
Science
, vol.336
, pp. 489-493
-
-
Olszak, T.1
An, D.2
Zeissig, S.3
Vera, M.P.4
Richter, J.5
Franke, A.6
Glickman, J.N.7
Siebert, R.8
Baron, R.M.9
Kasper, D.L.10
Blumberg, R.S.11
-
34
-
-
84892774558
-
Sphingolipids from a symbiotic microbe regulate homeostasis of host intestinal natural killer T cells
-
An, D., S. F. Oh, T. Olszak, J. F. Neves, F. Y. Avci, D. Erturk-Hasdemir, X. Lu, S. Zeissig, R. S. Blumberg, and D. L. Kasper. 2014. Sphingolipids from a symbiotic microbe regulate homeostasis of host intestinal natural killer T cells. Cell 156: 123-133.
-
(2014)
Cell
, vol.156
, pp. 123-133
-
-
An, D.1
Oh, S.F.2
Olszak, T.3
Neves, J.F.4
Avci, F.Y.5
Erturk-Hasdemir, D.6
Lu, X.7
Zeissig, S.8
Blumberg, R.S.9
Kasper, D.L.10
-
36
-
-
33947622744
-
Infection with a helminth parasite prevents experimental colitis via a macrophage-mediated mechanism
-
Smith, P., N. E. Mangan, C. M. Walsh, R. E. Falon, A. N. J. McKenzie, N. van Rooijen, and P. G. Fallon. 2007. Infection with a helminth parasite prevents experimental colitis via a macrophage-mediated mechanism. J. Immunol. 78: 4557-4566.
-
(2007)
J. Immunol.
, vol.78
, pp. 4557-4566
-
-
Smith, P.1
Mangan, N.E.2
Walsh, C.M.3
Falon, R.E.4
McKenzie, A.N.J.5
Van Rooijen, N.6
Fallon, P.G.7
-
37
-
-
78649957904
-
Nod1 and Nod2 regulation of inflammation in the Salmonella colitis model
-
Geddes, K., S. Rubino, C. Streutker, J. H. Cho, J. G. Magalhaes, L. Le Bourhis, T. Selvanantham, S. E. Girardin, and D. J. Philpott. 2010. Nod1 and Nod2 regulation of inflammation in the Salmonella colitis model. Infect. Immun. 78: 5107-5115.
-
(2010)
Infect. Immun.
, vol.78
, pp. 5107-5115
-
-
Geddes, K.1
Rubino, S.2
Streutker, C.3
Cho, J.H.4
Magalhaes, J.G.5
Le Bourhis, L.6
Selvanantham, T.7
Girardin, S.E.8
Philpott, D.J.9
-
38
-
-
79960131814
-
Identification of an innate T helper type 17 response to intestinal bacterial pathogens
-
Geddes, K., S. J. Rubino, J. G. Magalhaes, C. Streutker, L. Le Bourhis, J. H. Cho, S. J. Robertson, C. J. Kim, R. Kaul, D. J. Philpott, and S. E. Girardin. 2011. Identification of an innate T helper type 17 response to intestinal bacterial pathogens. Nat. Med. 17: 837-844.
-
(2011)
Nat. Med.
, vol.17
, pp. 837-844
-
-
Geddes, K.1
Rubino, S.J.2
Magalhaes, J.G.3
Streutker, C.4
Le Bourhis, L.5
Cho, J.H.6
Robertson, S.J.7
Kim, C.J.8
Kaul, R.9
Philpott, D.J.10
Girardin, S.E.11
-
39
-
-
84877292277
-
Nod1 and Nod2 signaling does not alter the composition of intestinal bacterial communities at homeostasis
-
Robertson, S. J., J. Y. Zhou, K. Geddes, S. J. Rubino, J. H. Cho, S. E. Girardin, and D. J. Philpott. 2013. Nod1 and Nod2 signaling does not alter the composition of intestinal bacterial communities at homeostasis. Gut Microbes 4: 222-231.
-
(2013)
Gut Microbes
, vol.4
, pp. 222-231
-
-
Robertson, S.J.1
Zhou, J.Y.2
Geddes, K.3
Rubino, S.J.4
Cho, J.H.5
Girardin, S.E.6
Philpott, D.J.7
-
40
-
-
84863981120
-
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
-
Caporaso, J. G., C. L. Lauber, W. A. Walters, D. Berg-Lyons, J. Huntley, N. Fierer, S. M. Owens, J. Betley, L. Fraser, M. Bauer, et al. 2012. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J. 6: 1621-1624.
-
(2012)
ISME J.
, vol.6
, pp. 1621-1624
-
-
Caporaso, J.G.1
Lauber, C.L.2
Walters, W.A.3
Berg-Lyons, D.4
Huntley, J.5
Fierer, N.6
Owens, S.M.7
Betley, J.8
Fraser, L.9
Bauer, M.10
-
41
-
-
84857011001
-
PANDAseq: Paired-end assembler for illumina sequences
-
Masella, A. P., A. K. Bartram, J. M. Truszkowski, D. G. Brown, and J. D. Neufeld. 2012. PANDAseq: paired-end assembler for illumina sequences. BMC Bioinformatics 13: 31.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 31
-
-
Masella, A.P.1
Bartram, A.K.2
Truszkowski, J.M.3
Brown, D.G.4
Neufeld, J.D.5
-
42
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar, R. C. 2010. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: 2460-2461.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
43
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis, T. Z., P. Hugenholtz, N. Larsen, M. Rojas, E. L. Brodie, K. Keller, T. Huber, D. Dalevi, P. Hu, and G. L. Andersen. 2006. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl. Environ. Microbiol. 72: 5069-5072.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 5069-5072
-
-
Desantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
Huber, T.7
Dalevi, D.8
Hu, P.9
Andersen, G.L.10
-
44
-
-
77952243141
-
Correspondence
-
Caporaso, J. G., J. Kuczynski, J. Stombaugh, K. Bittinger, F. D. Bushman, E. K. Costello, N. Fierer, A. G. Peña, J. K. Goodrich, J. I. Gordon, et al. 2010. Correspondence. Nat. Methods 7: 335-336.
-
(2010)
Nat. Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Peña, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
-
45
-
-
75249107844
-
PyNAST: A flexible tool for aligning sequences to a template alignment
-
Caporaso, J. G., K. Bittinger, F. D. Bushman, T. Z. DeSantis, G. L. Andersen, and R. Knight. 2010. PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics 26: 266-267.
-
(2010)
Bioinformatics
, vol.26
, pp. 266-267
-
-
Caporaso, J.G.1
Bittinger, K.2
Bushman, F.D.3
Desantis, T.Z.4
Andersen, G.L.5
Knight, R.6
-
46
-
-
67649327176
-
FastTree: Computing large minimum evolution trees with profiles instead of a distance matrix
-
Price, M. N., P. S. Dehal, and A. P. Arkin. 2009. FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol. Biol. Evol. 26: 1641-1650.
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 1641-1650
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
47
-
-
84871979584
-
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
-
Bokulich, N. A., S. Subramanian, J. J. Faith, D. Gevers, J. I. Gordon, R. Knight, D. A. Mills, and J. G. Caporaso. 2013. Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nat. Methods 10: 57-59.
-
(2013)
Nat. Methods
, vol.10
, pp. 57-59
-
-
Bokulich, N.A.1
Subramanian, S.2
Faith, J.J.3
Gevers, D.4
Gordon, J.I.5
Knight, R.6
Mills, D.A.7
Caporaso, J.G.8
-
48
-
-
23244434262
-
NKT cells are critical for the initiation of an inflammatory bowel response against Toxoplasma gondii
-
Ronet, C., S. Darche, M. Leite de Moraes, S. Miyake, T. Yamamura, J. A. Louis, L. H. Kasper, and D. Buzoni-Gatel. 2005. NKT cells are critical for the initiation of an inflammatory bowel response against Toxoplasma gondii. J. Immunol. 175: 899-908.
-
(2005)
J. Immunol.
, vol.175
, pp. 899-908
-
-
Ronet, C.1
Darche, S.2
Moraes De M.Leite3
Miyake, S.4
Yamamura, T.5
Louis, J.A.6
Kasper, L.H.7
Buzoni-Gatel, D.8
-
49
-
-
84866461477
-
Familial transmission rather than defective innate immunity shapes the distinct intestinal microbiota of TLR-deficient mice
-
Ubeda, C., L. Lipuma, A. Gobourne, A. Viale, I. Leiner, M. Equinda, R. Khanin, and E. G. Pamer. 2012. Familial transmission rather than defective innate immunity shapes the distinct intestinal microbiota of TLR-deficient mice. J. Exp. Med. 209: 1445-1456.
-
(2012)
J. Exp. Med.
, vol.209
, pp. 1445-1456
-
-
Ubeda, C.1
Lipuma, L.2
Gobourne, A.3
Viale, A.4
Leiner, I.5
Equinda, M.6
Khanin, R.7
Pamer, E.G.8
-
50
-
-
84929094040
-
Vertically transmitted faecal IgA levels determine extra-chromosomal phenotypic variation
-
Moon, C., M. T. Baldridge, M. A. Wallace, C.-A. D. Burnham, H. W. Virgin, and T. S. Stappenbeck. 2015. Vertically transmitted faecal IgA levels determine extra-chromosomal phenotypic variation. Nature 521: 90-93.
-
(2015)
Nature
, vol.521
, pp. 90-93
-
-
Moon, C.1
Baldridge, M.T.2
Wallace, M.A.3
Burnham, C.-A.D.4
Virgin, H.W.5
Stappenbeck, T.S.6
-
51
-
-
84881110953
-
IL-22-producing neutrophils contribute to antimicrobial defense and restitution of colonic epithelial integrity during colitis
-
Zindl, C. L., J.-F. Lai, Y. K. Lee, C. L. Maynard, S. N. Harbour, W. Ouyang, D. D. Chaplin, and C. T. Weaver. 2013. IL-22-producing neutrophils contribute to antimicrobial defense and restitution of colonic epithelial integrity during colitis. Proc. Natl. Acad. Sci. USA 110: 12768-12773.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 12768-12773
-
-
Zindl, C.L.1
Lai, J.-F.2
Lee, Y.K.3
Maynard, C.L.4
Harbour, S.N.5
Ouyang, W.6
Chaplin, D.D.7
Weaver, C.T.8
-
52
-
-
84953231157
-
Cutting edge: IL-36 receptor promotes resolution of intestinal damage
-
Medina-Contreras, O., A. Harusato, H. Nishio, K. L. Flannigan, V. Ngo, G. Leoni, P.-A. Neumann, D. Geem, L. N. Lili, R. A. Ramadas, et al. 2016. Cutting edge: IL-36 receptor promotes resolution of intestinal damage. J. Immunol. 196: 34-38.
-
(2016)
J. Immunol.
, vol.196
, pp. 34-38
-
-
Medina-Contreras, O.1
Harusato, A.2
Nishio, H.3
Flannigan, K.L.4
Ngo, V.5
Leoni, G.6
Neumann, P.-A.7
Geem, D.8
Lili, L.N.9
Ramadas, R.A.10
-
53
-
-
33750530394
-
IL-23 plays a key role in Helicobacter hepaticus-induced T cell-dependent colitis
-
Kullberg, M. C., D. Jankovic, C. G. Feng, S. Hue, P. L. Gorelick, B. S. McKenzie, D. J. Cua, F. Powrie, A. W. Cheever, K. J. Maloy, and A. Sher. 2006. IL-23 plays a key role in Helicobacter hepaticus-induced T cell-dependent colitis. J. Exp. Med. 203: 2485-2494.
-
(2006)
J. Exp. Med.
, vol.203
, pp. 2485-2494
-
-
Kullberg, M.C.1
Jankovic, D.2
Feng, C.G.3
Hue, S.4
Gorelick, P.L.5
McKenzie, B.S.6
Cua, D.J.7
Powrie, F.8
Cheever, A.W.9
Maloy, K.J.10
Sher, A.11
-
54
-
-
44449106055
-
A microbial symbiosis factor prevents intestinal inflammatory disease
-
Mazmanian, S. K., J. L. Round, and D. L. Kasper. 2008. A microbial symbiosis factor prevents intestinal inflammatory disease. Nature 453: 620-625.
-
(2008)
Nature
, vol.453
, pp. 620-625
-
-
Mazmanian, S.K.1
Round, J.L.2
Kasper, D.L.3
-
55
-
-
84900423596
-
CD4CD8aa lymphocytes, a novel human regulatory T cell subset induced by colonic bacteria and deficient in patients with inflammatory bowel disease
-
Sarrabayrouse, G., C. Bossard, J.-M. Chauvin, A. Jarry, G. Meurette, E. Quévrain, C. Bridonneau, L. Preisser, K. Asehnoune, N. Labarrière, et al. 2014. CD4CD8aa lymphocytes, a novel human regulatory T cell subset induced by colonic bacteria and deficient in patients with inflammatory bowel disease. PLoS Biol. 12: e1001833.
-
(2014)
PLoS Biol.
, vol.12
, pp. e1001833
-
-
Sarrabayrouse, G.1
Bossard, C.2
Chauvin, J.-M.3
Jarry, A.4
Meurette, G.5
Quévrain, E.6
Bridonneau, C.7
Preisser, L.8
Asehnoune, K.9
Labarrière, N.10
-
56
-
-
66449108669
-
Cd1d-dependent regulation of bacterial colonization in the intestine of mice
-
Nieuwenhuis, E. E. S., T. Matsumoto, D. Lindenbergh, R. Willemsen, A. Kaser, Y. Simons-Oosterhuis, S. Brugman, K. Yamaguchi, H. Ishikawa, Y. Aiba, et al. 2009. Cd1d-dependent regulation of bacterial colonization in the intestine of mice. J. Clin. Invest. 119: 1241-1250.
-
(2009)
J. Clin. Invest.
, vol.119
, pp. 1241-1250
-
-
Nieuwenhuis, E.E.S.1
Matsumoto, T.2
Lindenbergh, D.3
Willemsen, R.4
Kaser, A.5
Simons-Oosterhuis, Y.6
Brugman, S.7
Yamaguchi, K.8
Ishikawa, H.9
Aiba, Y.10
-
57
-
-
84877259745
-
Seg-mented filamentous bacteria-like organisms in histological slides of ileo-cecal valves in patients with ulcerative colitis
-
Caselli, M., D. Tosini, R. G. agrave, A. Gasbarrini, and G. Lanza. 2013. Seg-mented filamentous bacteria-like organisms in histological slides of ileo-cecal valves in patients with ulcerative colitis. Am. J. Gastroenterol. 108: 860-861.
-
(2013)
Am. J. Gastroenterol.
, vol.108
, pp. 860-861
-
-
Caselli, M.1
Tosini, D.2
Agrave, R.G.3
Gasbarrini, A.4
Lanza, G.5
-
58
-
-
35348945960
-
+ T cells
-
+ T cells. Inflamm. Bowel Dis. 13: 1202-1211.
-
(2007)
Inflamm. Bowel Dis.
, vol.13
, pp. 1202-1211
-
-
Stepankova, R.1
Powrie, F.2
Kofronova, O.3
Kozakova, H.4
Hudcovic, T.5
Hrncir, T.6
Uhlig, H.7
Read, S.8
Rehakova, Z.9
Benada, O.10
-
59
-
-
84903376660
-
Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission
-
Rooks, M. G., P. Veiga, L. H. Wardwell-Scott, T. Tickle, N. Segata, M. Michaud, C. A. Gallini, C. E. Beal, J. E. van Hylckama-Vlieg, S. A. Ballal, et al. 2014. Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission. ISME J. 8: 1403-1417.
-
(2014)
ISME J.
, vol.8
, pp. 1403-1417
-
-
Rooks, M.G.1
Veiga, P.2
Wardwell-Scott, L.H.3
Tickle, T.4
Segata, N.5
Michaud, M.6
Gallini, C.A.7
Beal, C.E.8
Van Hylckama-Vlieg, J.E.9
Ballal, S.A.10
-
60
-
-
84867744191
-
Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis
-
Berry, D., C. Schwab, G. Milinovich, J. Reichert, K. Ben Mahfoudh, T. Decker, M. Engel, B. Hai, E. Hainzl, S. Heider, et al. 2012. Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis. ISME J. 6: 2091-2106.
-
(2012)
ISME J.
, vol.6
, pp. 2091-2106
-
-
Berry, D.1
Schwab, C.2
Milinovich, G.3
Reichert, J.4
Ben Mahfoudh, K.5
Decker, T.6
Engel, M.7
Hai, B.8
Hainzl, E.9
Heider, S.10
-
61
-
-
84886286566
-
Extracellular vesicles derived from gut microbiota, especially Akkermansia muciniphila, protect the progression of dextran sulfate sodium-induced colitis
-
Kang, C.-S., M. Ban, E.-J. Choi, H.-G. Moon, J.-S. Jeon, D.-K. Kim, S.-K. Park, S. G. Jeon, T.-Y. Roh, S.-J. Myung, et al. 2013. Extracellular vesicles derived from gut microbiota, especially Akkermansia muciniphila, protect the progression of dextran sulfate sodium-induced colitis. PLoS One 8: e76520.
-
(2013)
PLoS One
, vol.8
, pp. e76520
-
-
Kang, C.-S.1
Ban, M.2
Choi, E.-J.3
Moon, H.-G.4
Jeon, J.-S.5
Kim, D.-K.6
Park, S.-K.7
Jeon, S.G.8
Roh, T.-Y.9
Myung, S.-J.10
-
62
-
-
0034027081
-
The contribution of sulphate reducing bacteria and 5-aminosalicylic acid to faecal sulphide in pa-tients with ulcerative colitis
-
Pitcher, M. C., E. R. Beatty, and J. H. Cummings. 2000. The contribution of sulphate reducing bacteria and 5-aminosalicylic acid to faecal sulphide in pa-tients with ulcerative colitis. Gut 46: 64-72.
-
(2000)
Gut
, vol.46
, pp. 64-72
-
-
Pitcher, M.C.1
Beatty, E.R.2
Cummings, J.H.3
-
63
-
-
0035172782
-
NK T cell-derived IL-10 is essential for the differentiation of antigen-specific T regulatory cells in systemic tolerance
-
Sonoda, K. H., D. E. Faunce, M. Taniguchi, M. Exley, S. Balk, and J. Stein-Streilein. 2001. NK T cell-derived IL-10 is essential for the differentiation of antigen-specific T regulatory cells in systemic tolerance. J. Immunol. 166: 42-50.
-
(2001)
J. Immunol.
, vol.166
, pp. 42-50
-
-
Sonoda, K.H.1
Faunce, D.E.2
Taniguchi, M.3
Exley, M.4
Balk, S.5
Stein-Streilein, J.6
-
64
-
-
20144389877
-
Exogenous and endogenous glycolipid antigens activate NKT cells during microbial infections
-
Mattner, J., K. L. Debord, N. Ismail, R. D. Goff, C. Cantu, III, D. Zhou, P. Saint-Mezard, V. Wang, Y. Gao, N. Yin, et al. 2005. Exogenous and endogenous glycolipid antigens activate NKT cells during microbial infections. Nature 434: 525-529.
-
(2005)
Nature
, vol.434
, pp. 525-529
-
-
Mattner, J.1
Debord, K.L.2
Ismail, N.3
Goff, R.D.4
Cantu, C.5
Zhou, I.D.6
Saint-Mezard, P.7
Wang, V.8
Gao, Y.9
Yin, N.10
-
65
-
-
0347776209
-
Mech-anism of CD1d-restricted natural killer T cell activation during microbial in-fection
-
Brigl, M., L. Bry, S. C. Kent, J. E. Gumperz, and M. B. Brenner. 2003. Mech-anism of CD1d-restricted natural killer T cell activation during microbial in-fection. Nat. Immunol. 4: 1230-1237.
-
(2003)
Nat. Immunol.
, vol.4
, pp. 1230-1237
-
-
Brigl, M.1
Bry, L.2
Kent, S.C.3
Gumperz, J.E.4
Brenner, M.B.5
-
66
-
-
79958248405
-
Innate and cytokine-driven signals, rather than microbial antigens, dominate in natural killer T cell activation during microbial infection
-
Brigl, M., R. V. V. Tatituri, G. F. M. Watts, V. Bhowruth, E. A. Leadbetter, N. Barton, N. R. Cohen, F. F. Hsu, G. S. Besra, and M. B. Brenner. 2011. Innate and cytokine-driven signals, rather than microbial antigens, dominate in natural killer T cell activation during microbial infection. J. Exp. Med. 208: 1163-1177.
-
(2011)
J. Exp. Med.
, vol.208
, pp. 1163-1177
-
-
Brigl, M.R.1
Tatituri, V.V.2
Watts, G.F.M.3
Bhowruth, V.4
Leadbetter, E.A.5
Barton, N.6
Cohen, N.R.7
Hsu, F.F.8
Besra, G.S.9
Brenner, M.B.10
-
67
-
-
84888360078
-
Nod1 and Nod2 enhance TLR-mediated invariant NKT cell activation during bacterial infection
-
Selvanantham, T., N. K. Escalante, M. Cruz Tleugabulova, S. Fiévé, S. E. Girardin, D. J. Philpott, and T. Mallevaey. 2013. Nod1 and Nod2 enhance TLR-mediated invariant NKT cell activation during bacterial infection. J. Immunol. 191: 5646-5654.
-
(2013)
J. Immunol.
, vol.191
, pp. 5646-5654
-
-
Selvanantham, T.1
Escalante, N.K.2
Cruz Tleugabulova, M.3
Fiévé, S.4
Girardin, S.E.5
Philpott, D.J.6
Mallevaey, T.7
-
68
-
-
22544477540
-
The role of CD1d-restricted NK T lymphocytes in the immune response to oral infection with Salmonella typhimurium
-
Berntman, E., J. Rolf, C. Johansson, P. Anderson, and S. L. Cardell. 2005. The role of CD1d-restricted NK T lymphocytes in the immune response to oral infection with Salmonella typhimurium. Eur. J. Immunol. 35: 2100-2109.
-
(2005)
Eur. J. Immunol.
, vol.35
, pp. 2100-2109
-
-
Berntman, E.1
Rolf, J.2
Johansson, C.3
Anderson, P.4
Cardell, S.L.5
-
69
-
-
84855251233
-
The need for littermate controls
-
Holmdahl, R., and B. Malissen. 2012. The need for littermate controls. Eur. J. Immunol. 42: 45-47.
-
(2012)
Eur. J. Immunol.
, vol.42
, pp. 45-47
-
-
Holmdahl, R.1
Malissen, B.2
-
70
-
-
84928881439
-
Standardised animal models of host microbial mutualism
-
Macpherson, A. J., and K. D. McCoy. 2015. Standardised animal models of host microbial mutualism. Mucosal Immunol. 8: 476-486.
-
(2015)
Mucosal Immunol.
, vol.8
, pp. 476-486
-
-
MacPherson, A.J.1
McCoy, K.D.2
-
71
-
-
84928895566
-
Addressing the experimental variability associated with the microbiota
-
Eberl, G. 2015. Addressing the experimental variability associated with the microbiota. Mucosal Immunol. 8: 487-490.
-
(2015)
Mucosal Immunol.
, vol.8
, pp. 487-490
-
-
Eberl, G.1
-
72
-
-
34547129847
-
Development of the human infant intestinal microbiota
-
Palmer, C., E. M. Bik, D. B. DiGiulio, D. A. Relman, and P. O. Brown. 2007. Development of the human infant intestinal microbiota. PLoS Biol. 5: e177.
-
(2007)
PLoS Biol.
, vol.5
, pp. e177
-
-
Palmer, C.1
Bik, E.M.2
Digiulio, D.B.3
Relman, D.A.4
Brown, P.O.5
-
73
-
-
84858956036
-
Patterns of early gut colonization shape future immune responses of the host
-
Hansen, C. H. F., D. S. Nielsen, M. Kverka, Z. Zakostelska, K. Klimesova, T. Hudcovic, H. Tlaskalova-Hogenova, and A. K. Hansen. 2012. Patterns of early gut colonization shape future immune responses of the host. PLoS One 7: e34043.
-
(2012)
PLoS One
, vol.7
, pp. e34043
-
-
Hansen, C.H.F.1
Nielsen, D.S.2
Kverka, M.3
Zakostelska, Z.4
Klimesova, K.5
Hudcovic, T.6
Tlaskalova-Hogenova, H.7
Hansen, A.K.8
-
74
-
-
84907008497
-
IL-10-producing NKT10 cells are a distinct regulatory invariant NKT cell subset
-
Sag, D., P. Krause, C. C. Hedrick, M. Kronenberg, and G. Wingender. 2014. IL-10-producing NKT10 cells are a distinct regulatory invariant NKT cell subset. J. Clin. Invest. 124: 3725-3740.
-
(2014)
J. Clin. Invest.
, vol.124
, pp. 3725-3740
-
-
Sag, D.1
Krause, P.2
Hedrick, C.C.3
Kronenberg, M.4
Wingender, G.5
-
75
-
-
84886673181
-
Steady-state production of IL-4 modulates immunity in mouse strains and is determined by lineage diversity of iNKT cells
-
Lee, Y. J., K. L. Holzapfel, J. Zhu, S. C. Jameson, and K. A. Hogquist. 2013. Steady-state production of IL-4 modulates immunity in mouse strains and is determined by lineage diversity of iNKT cells. Nat. Immunol. 14: 1146-1154.
-
(2013)
Nat. Immunol.
, vol.14
, pp. 1146-1154
-
-
Lee, Y.J.1
Holzapfel, K.L.2
Zhu, J.3
Jameson, S.C.4
Hogquist, K.A.5
|