Draft genome sequence of Rhizopus chinensis CCTCCM201021, used for brewing traditional Chinese alcoholic beverages

Genome Announcements

Volumn 1, Issue 2, 2013, Pages

  Wang, Dong ^a   Wu, Rong ^a   Xu, Yan ^a   Li, Ming ^a  

^a JIANGNAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84995959546     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00195-12     Document Type: Article

References (11)

1. Caplice E, Fitzgerald GF. 1999. Food fermentations: role of microorganisms in food production and preservation. Int. J. Food Microbiol. 50: 131-149.
2. Xu Y, Wang D, Fan WL, Mu XQ, Chen J. 2010. Traditional Chinese biotechnology, p 189-233. In Tsao GT, Ouyang P, Chen J (ed), Advances in biochemical engineering/biotechnology, vol 122. Biotechnology in China II: chemicals, energy and environment. Springer-Verlag, New York, NY.
3. Oda Y, Yajima Y, Kinoshita M, Ohnishi M. 2003. Differences of Rhizopus oryzae strains in organic acid synthesis and fatty acid composition. Food Microbiol. 20:371-375.
4. Wang D, Xu Y, Shan T. 2008. Effects of oils and oil-related substrates on the synthetic activity of membrane-bound lipase from Rhizopus chinensis and optimization of the lipase fermentation media. Biochem. Eng. J. 41: 30-37.
5. Xu Y, Wang D, Mu XQ, Zhao GA, Zhang KC. 2002. Biosynthesis of ethyl esters of short-chain fatty acids using whole-cell lipase from Rhizopus chinensisCCTCCM201021 in non-aqueous phase. J. Mol. Catal. B Enzym. 18:29-37.
6. Li R, Li Y, Kristiansen K, Wang J. 2008. SOAP: short oligonucleotide alignment program. Bioinformatics 24:713-714.
7. Stanke M, Steinkamp R, Waack S, Morgenstern B. 2004. Augustus: a web server for gene finding in eukaryotes. Nucleic Acids Res. 32: W309-W312.
8. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964.
9. Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, Henrissat B. 2009. The carbohydrate-active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res. 37:D233-D238.
10. Futagami T, Mori K, Yamashita A, Wada S, Kajiwara Y, Takashita H, Omori T, Takegawa K, Tashiro K, Kuhara S, Goto M. 2011. Genome sequence of the white koji mold Aspergillus kawachii IFO 4308, used for brewing the Japanese distilled spirit shochu. Eukaryot. Cell 10:1586-1587.
11. Ma LJ, Ibrahim AS, Skory C, Grabherr MG, Burger G, Butler M, Elias M, Idnurm A, Lang BF, Sone T, Abe A, Calvo SE, Corrochano LM, Engels R, Fu J, Hansberg W, Kim JM, Kodira CD, Koehrsen MJ, Liu B, Miranda-Saavedra D, O'Leary S, Ortiz-Castellanos L, Poulter R, Rodriguez-Romero J, Ruiz-Herrera J, Shen YQ, Zeng Q, Galagan J, Birren BW, Cuomo CA, Wickes BL. 2009. Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication. PLoS Genet. 5:e1000549. doi:10.1371/journal.pgen.1000549.