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Volumn 32, Issue 24, 2016, Pages 3839-3841

Discoal: Flexible coalescent simulations with selection

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; BIOLOGICAL MODEL; BIOLOGY; COMPUTER LANGUAGE; COMPUTER SIMULATION; GENE FREQUENCY; MARKOV CHAIN; MUTATION; POPULATION GENETICS; PROCEDURES; SOFTWARE;

EID: 84994845632     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btw556     Document Type: Article
Times cited : (72)

References (21)
  • 1
    • 0029036829 scopus 로고
    • The hitchhiking effect on the site frequency spectrum of DNA polymorphisms
    • Braverman,J.M. et al. (1995) The hitchhiking effect on the site frequency spectrum of DNA polymorphisms. Genetics, 140, 783-796.
    • (1995) Genetics , vol.140 , pp. 783-796
    • Braverman, J.M.1
  • 2
    • 4644246155 scopus 로고    scopus 로고
    • Ancestral inference on gene trees under selection
    • Coop,G. and Griffiths,R.C. (2004) Ancestral inference on gene trees under selection. Theor. Popul. Biol., 66, 219-232.
    • (2004) Theor. Popul. Biol. , vol.66 , pp. 219-232
    • Coop, G.1    Griffiths, R.C.2
  • 4
    • 77955381733 scopus 로고    scopus 로고
    • MSMs: A coalescent simulation program including recombination, demographic structure and selection at a single locus
    • Ewing,G. and Hermisson,J. (2010) MSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus. Bioinformatics, 26, 2064-2065.
    • (2010) Bioinformatics , vol.26 , pp. 2064-2065
    • Ewing, G.1    Hermisson, J.2
  • 5
    • 84887312794 scopus 로고    scopus 로고
    • Robust demographic inference from genomic and SNP data
    • Excoffier,L. et al. (2013) Robust demographic inference from genomic and SNP data. PLoS Genet., 9, e1003905.
    • (2013) PLoS Genet , vol.9
    • Excoffier, L.1
  • 6
    • 36749047447 scopus 로고    scopus 로고
    • Statistical evaluation of alternative models of human evolution
    • Fagundes,N.J. et al. (2007) Statistical evaluation of alternative models of human evolution. Proc. Natl. Acad. Sci. USA, 104, 17614-17619.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 17614-17619
    • Fagundes, N.J.1
  • 7
    • 0001935493 scopus 로고
    • Gene genealogies and the coalescent process
    • Hudson,R.R. (1990) Gene genealogies and the coalescent process. Oxford Surv. Evol. Biol., 7, 1-44.
    • (1990) Oxford Surv. Evol. Biol. , vol.7 , pp. 1-44
    • Hudson, R.R.1
  • 8
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • Hudson,R.R. (2002) Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics, 18, 337-338.
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • Hudson, R.R.1
  • 9
    • 0023815589 scopus 로고
    • The coalescent process in models with selection
    • Kaplan,N.L. et al. (1988) The coalescent process in models with selection. Genetics, 120, 819-829.
    • (1988) Genetics , vol.120 , pp. 819-829
    • Kaplan, N.L.1
  • 10
    • 0024372736 scopus 로고
    • The “hitchhiking effect” revisited
    • Kaplan,N.L. et al. (1989) The “hitchhiking effect” revisited. Genetics, 123, 887-899.
    • (1989) Genetics , vol.123 , pp. 887-899
    • Kaplan, N.L.1
  • 11
    • 0036189827 scopus 로고    scopus 로고
    • Detecting a local signature of genetic hitchhiking along a recombining chromosome
    • Kim,Y. and Stephan,W. (2002) Detecting a local signature of genetic hitchhiking along a recombining chromosome. Genetics, 160, 765-777.
    • (2002) Genetics , vol.160 , pp. 765-777
    • Kim, Y.1    Stephan, W.2
  • 12
    • 84866081815 scopus 로고    scopus 로고
    • Genomic variation in natural populations of Drosophila melanogaster
    • Langley,C.H. et al. (2012) Genomic variation in natural populations of Drosophila melanogaster. Genetics, 192, 533-598.
    • (2012) Genetics , vol.192 , pp. 533-598
    • Langley, C.H.1
  • 13
    • 79959662697 scopus 로고    scopus 로고
    • Jaatha: A fast composite-likelihood approach to estimate demographic parameters
    • Naduvilezhath,L. et al. (2011) Jaatha: a fast composite-likelihood approach to estimate demographic parameters. Mol. Ecol, 20, 2709-2723.
    • (2011) Mol. Ecol , vol.20 , pp. 2709-2723
    • Naduvilezhath, L.1
  • 14
    • 0000913208 scopus 로고    scopus 로고
    • Coalescent theory
    • Balding, D.J., Bishop, M.J. and Cannings, C., editors, John Wiley & Sons, Chichester, UK
    • Nordborg,M. (2001) Coalescent theory. In: Balding, D.J., Bishop, M.J. and Cannings, C., editors, Handbook of Statistical Genetics. John Wiley & Sons, Chichester, UK, pp. 179-212.
    • (2001) Handbook of Statistical Genetics , pp. 179-212
    • Nordborg, M.1
  • 15
    • 33646592536 scopus 로고    scopus 로고
    • Soft sweeps II-molecular population genetics of adaptation from recurrent mutation or migration
    • Pennings,P.S. and Hermisson,J. (2006) Soft sweeps II-molecular population genetics of adaptation from recurrent mutation or migration. Mol. Biol. Evol., 23, 1076-1084.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 1076-1084
    • Pennings, P.S.1    Hermisson, J.2
  • 16
    • 0032735986 scopus 로고    scopus 로고
    • Population growth of human Y chromosomes: A study of Y chromosome microsatellites
    • Pritchard,J.K. et al. (1999) Population growth of human Y chromosomes: a study of Y chromosome microsatellites. Mol. Biol. Evol., 16, 1791-1798.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1791-1798
    • Pritchard, J.K.1
  • 17
    • 28644440530 scopus 로고    scopus 로고
    • The signature of positive selection on standing genetic variation
    • Przeworski,M. et al. (2005) The signature of positive selection on standing genetic variation. Evolution, 59, 2312-2323.
    • (2005) Evolution , vol.59 , pp. 2312-2323
    • Przeworski, M.1
  • 18
    • 67651050074 scopus 로고    scopus 로고
    • Pervasive natural selection in the Drosophila genome?
    • Sella,G. et al. (2009) Pervasive natural selection in the Drosophila genome? PLoS Genet., 5, e1000495.
    • (2009) PLoS Genet , vol.5
    • Sella, G.1
  • 19
    • 0025371374 scopus 로고
    • Relationship between DNA polymorphism and fixation time
    • Tajima,F. (1990) Relationship between DNA polymorphism and fixation time. Genetics, 125, 447-454.
    • (1990) Genetics , vol.125 , pp. 447-454
    • Tajima, F.1
  • 20
    • 67650895090 scopus 로고    scopus 로고
    • MBS: Modifying Hudson's ms software to generate samples of DNA sequences with a biallelic site under selection
    • Teshima,K.M. and Innan,H. (2009) mbs: modifying Hudson's ms software to generate samples of DNA sequences with a biallelic site under selection. BMC Bioinformatics, 10, 166.
    • (2009) BMC Bioinformatics , vol.10 , pp. 166
    • Teshima, K.M.1    Innan, H.2
  • 21
    • 0036743513 scopus 로고    scopus 로고
    • Testing models of selection and demography in Drosophila simulans
    • Wall,J.D. et al. (2002) Testing models of selection and demography in Drosophila simulans. Genetics, 162, 203-216.
    • (2002) Genetics , vol.162 , pp. 203-216
    • Wall, J.D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.