-
1
-
-
0033994020
-
Inference from gene trees in a subdivided population
-
M. Bahlo, and R.C. Griffiths Inference from gene trees in a subdivided population Theor. Popul. Biol. 57 2000 79 95
-
(2000)
Theor. Popul. Biol.
, vol.57
, pp. 79-95
-
-
Bahlo, M.1
Griffiths, R.C.2
-
2
-
-
1642286464
-
The effect of selection on genealogies
-
N.H. Barton, and A.M. Etheridge The effect of selection on genealogies Genetics 166 2004 1115 1131
-
(2004)
Genetics
, vol.166
, pp. 1115-1131
-
-
Barton, N.H.1
Etheridge, A.M.2
-
4
-
-
3142712394
-
Importance sampling on coalescent histories I
-
M. De Iorio, and R.C. Griffiths Importance sampling on coalescent histories I Adv. Appl. Probab. 36 2004 417 433
-
(2004)
Adv. Appl. Probab.
, vol.36
, pp. 417-433
-
-
De Iorio, M.1
Griffiths, R.C.2
-
5
-
-
3142769862
-
Importance sampling on coalescent histories, II. Subdivided population models
-
M. De Iorio, and R.C. Griffiths Importance sampling on coalescent histories, II. Subdivided population models Adv. Appl. Probab. 36 2004 434 454
-
(2004)
Adv. Appl. Probab.
, vol.36
, pp. 434-454
-
-
De Iorio, M.1
Griffiths, R.C.2
-
6
-
-
4644242303
-
Stepwise mutation likelihood computation by sequential importance sampling in subdivided population models
-
submitted.
-
De Iorio, M., Griffiths, R.C., Leblois, R., Rousset, F., 2004. Stepwise mutation likelihood computation by sequential importance sampling in subdivided population models. Theor. Popul. Biol., submitted.
-
(2004)
Theor. Popul. Biol.
-
-
De Iorio, M.1
Griffiths, R.C.2
Leblois, R.3
Rousset, F.4
-
7
-
-
0036021407
-
Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data
-
A.J. Drummond, G.K. Nicholls, A.G. Rodrigo, and W. Solomon Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data Genetics 161 2002 1307 1320
-
(2002)
Genetics
, vol.161
, pp. 1307-1320
-
-
Drummond, A.J.1
Nicholls, G.K.2
Rodrigo, A.G.3
Solomon, W.4
-
8
-
-
0015594457
-
Conditional diffusion processes in population genetics
-
W.J. Ewens Conditional diffusion processes in population genetics Theor. Popul. Biol. 4 1973 21 30
-
(1973)
Theor. Popul. Biol.
, vol.4
, pp. 21-30
-
-
Ewens, W.J.1
-
9
-
-
0035675042
-
Estimating recombination rates from population genetic data
-
P. Fearnhead, and P. Donnelly Estimating recombination rates from population genetic data Genetics 159 2001 1299 1318
-
(2001)
Genetics
, vol.159
, pp. 1299-1318
-
-
Fearnhead, P.1
Donnelly, P.2
-
10
-
-
0001947091
-
Likelihoods on coalescents: A Monte Carlo sampling approach to inferring parameters from population samples of molecular data
-
F. Seillier-Moiseiwitsch Institute of Mathematical Statistics and American Mathematical Society Providence, RI
-
J. Felsenstein, M.K. Kuhner, J. Yamato, and P. Beerli Likelihoods on coalescents a Monte Carlo sampling approach to inferring parameters from population samples of molecular data F. Seillier-Moiseiwitsch Statistics in Molecular Biology and Genetics. IMS Lect. Notes Monogr. Ser. Vol. 33 1999 Institute of Mathematical Statistics and American Mathematical Society Providence, RI 163 185
-
(1999)
Statistics in Molecular Biology and Genetics. IMS Lect. Notes Monogr. Ser.
, vol.33
, pp. 163-185
-
-
Felsenstein, J.1
Kuhner, M.K.2
Yamato, J.3
Beerli, P.4
-
11
-
-
0033799573
-
Apolipoprotein e variation at the sequence haplotype level: Implications for the origin and maintenance of a major human polymorphism
-
S.M. Fullerton, A.G. Clark, K.M. Weiss, D.A. Nickerson, S.L. Taylor, J.H. Stengard, V. Salomaa, E. Vartiainen, M. Perola, E. Boerwinkle, and C.F. Sing Apolipoprotein E variation at the sequence haplotype level implications for the origin and maintenance of a major human polymorphism Am. J. Hum. Genet. 67 2000 881 900
-
(2000)
Am. J. Hum. Genet.
, vol.67
, pp. 881-900
-
-
Fullerton, S.M.1
Clark, A.G.2
Weiss, K.M.3
Nickerson, D.A.4
Taylor, S.L.5
Stengard, J.H.6
Salomaa, V.7
Vartiainen, E.8
Perola, M.9
Boerwinkle, E.10
Sing, C.F.11
-
12
-
-
3142694742
-
Ancestral inference from gene trees
-
Donnelly, P., Foley, R. A. (Eds.), Genes, Fossils and Behaviour: An Integrated Approach to Human Evolution. IOS Press
-
Griffiths, R.C., 2001. Ancestral inference from gene trees. In: Donnelly, P., Foley, R. A. (Eds.), Genes, Fossils and Behaviour: An Integrated Approach to Human Evolution. NATO Science Series: Life Sciences, Vol. 310. IOS Press, pp. 137-172.
-
(2001)
NATO Science Series: Life Sciences
, vol.310
, pp. 137-172
-
-
Griffiths, R.C.1
-
13
-
-
4644241080
-
Ancestral inference from gene trees
-
M. Veuille M. Slatkin Oxford University Press Oxford
-
R.C. Griffiths Ancestral inference from gene trees M. Veuille M. Slatkin Modern Developments in Theoretical Population Genetics 2002 Oxford University Press Oxford 94 117
-
(2002)
Modern Developments in Theoretical Population Genetics
, pp. 94-117
-
-
Griffiths, R.C.1
-
14
-
-
0345274562
-
The frequency spectrum of a mutation, and its age, in a general diffusion model
-
R.C. Griffiths The frequency spectrum of a mutation, and its age, in a general diffusion model Theor. Popul. Biol. 64 2003 241 251
-
(2003)
Theor. Popul. Biol.
, vol.64
, pp. 241-251
-
-
Griffiths, R.C.1
-
15
-
-
0030498194
-
Ancestral inference from samples of DNA sequences with recombination
-
R.C. Griffiths, and P. Majoram Ancestral inference from samples of DNA sequences with recombination J. Comput. Biol. 3 1996 479 502
-
(1996)
J. Comput. Biol.
, vol.3
, pp. 479-502
-
-
Griffiths, R.C.1
Majoram, P.2
-
16
-
-
0000557367
-
An ancestral recombination graph
-
Donnelly, P., Tavaré, S. (Eds.), Springer-Verlag, Berlin
-
Griffiths, R.C., Majoram, P., 1997. An ancestral recombination graph. In: Donnelly, P., Tavaré, S. (Eds.), Progress in Population Genetics and Human Evolution. IMA Volumes in Mathematics and its Applications, Vol. 87. Springer-Verlag, Berlin, pp. 257-270.
-
(1997)
Progress in Population Genetics and Human Evolution. IMA Volumes in Mathematics and Its Applications
, vol.87
, pp. 257-270
-
-
Griffiths, R.C.1
Majoram, P.2
-
17
-
-
34548452457
-
Simulating probability distributions in the coalescent
-
R.C. Griffiths, and S. Tavaré Simulating probability distributions in the coalescent Theor. Popul. Biol. 46 1994 131 159
-
(1994)
Theor. Popul. Biol.
, vol.46
, pp. 131-159
-
-
Griffiths, R.C.1
Tavaré, S.2
-
18
-
-
0028782096
-
Sampling theory for neutral alleles in a varying environment
-
R.C. Griffiths, and S. Tavaré Sampling theory for neutral alleles in a varying environment Philos. Trans. R. Soc. Lond. B 344 1994 403 410
-
(1994)
Philos. Trans. R. Soc. Lond. B
, vol.344
, pp. 403-410
-
-
Griffiths, R.C.1
Tavaré, S.2
-
19
-
-
84987049379
-
Efficient algorithms for inferring evolutionary trees
-
D. Gusfield Efficient algorithms for inferring evolutionary trees Networks 21 1991 19 28
-
(1991)
Networks
, vol.21
, pp. 19-28
-
-
Gusfield, D.1
-
20
-
-
0033911892
-
Detection of the signature of natural selection in humans: Evidence from the Duffy blood group
-
M.T. Hamblin, and A. Di Rienzo Detection of the signature of natural selection in humans evidence from the Duffy blood group Am. J. Hum. Genet. 66 2000 1669 1679
-
(2000)
Am. J. Hum. Genet.
, vol.66
, pp. 1669-1679
-
-
Hamblin, M.T.1
Di Rienzo, A.2
-
21
-
-
0020744702
-
Properties of a neutral allele model with intragenic recombination
-
R.R. Hudson Properties of a neutral allele model with intragenic recombination Theor. Popul. Biol. 23 1983 183 201
-
(1983)
Theor. Popul. Biol.
, vol.23
, pp. 183-201
-
-
Hudson, R.R.1
-
22
-
-
0023760376
-
The coalescent process in models with selection and recombination
-
R.R. Hudson, and N.L. Kaplan The coalescent process in models with selection and recombination Genetics 120 1988 831 840
-
(1988)
Genetics
, vol.120
, pp. 831-840
-
-
Hudson, R.R.1
Kaplan, N.L.2
-
23
-
-
0023815589
-
The coalescent process in models with selection
-
N.L. Kaplan, T. Darden, and R.R. Hudson The coalescent process in models with selection Genetics 120 1988 819 829
-
(1988)
Genetics
, vol.120
, pp. 819-829
-
-
Kaplan, N.L.1
Darden, T.2
Hudson, R.R.3
-
25
-
-
0025971650
-
The coalescent process in models with selection, recombination and geographic subdivision
-
N.L. Kaplan, R.R. Hudson, and M. Iizuka The coalescent process in models with selection, recombination and geographic subdivision Genet. Res. 57 1991 83 91
-
(1991)
Genet. Res.
, vol.57
, pp. 83-91
-
-
Kaplan, N.L.1
Hudson, R.R.2
Iizuka, M.3
-
28
-
-
0036189827
-
Detecting a local signature of genetic hitchhiking along a recombining chromosome
-
Y. Kim, and W. Stephan Detecting a local signature of genetic hitchhiking along a recombining chromosome Genetics 160 2002 765 777
-
(2002)
Genetics
, vol.160
, pp. 765-777
-
-
Kim, Y.1
Stephan, W.2
-
32
-
-
0042937471
-
An application of time reversal of Markov processess to a problem of population genetics
-
M. Nagasawa, and T. Maruyama An application of time reversal of Markov processess to a problem of population genetics Adv. Appl. Probab. 11 1979 457 478
-
(1979)
Adv. Appl. Probab.
, vol.11
, pp. 457-478
-
-
Nagasawa, M.1
Maruyama, T.2
-
33
-
-
0031014102
-
The genealogy of samples in models with selection
-
C. Neuhauser, and S.M. Krone The genealogy of samples in models with selection Genetics 145 1997 519 534
-
(1997)
Genetics
, vol.145
, pp. 519-534
-
-
Neuhauser, C.1
Krone, S.M.2
-
34
-
-
0034809334
-
Statistical tests of neutrality in the age of genomics
-
R. Nielsen Statistical tests of neutrality in the age of genomics Heredity 86 2001 641 647
-
(2001)
Heredity
, vol.86
, pp. 641-647
-
-
Nielsen, R.1
-
35
-
-
0000913208
-
Coalescent theory
-
D.J. Balding M. Bishop C. Cannings Wiley Chichester
-
M. Nordborg Coalescent theory D.J. Balding M. Bishop C. Cannings Handbook of Statistical Genetics 2001 Wiley Chichester 179 212
-
(2001)
Handbook of Statistical Genetics
, pp. 179-212
-
-
Nordborg, M.1
-
36
-
-
0031267307
-
The mean and variance of the number of segregating sites since the last hitchhiking event
-
M. Perlitz, and W. Stephan The mean and variance of the number of segregating sites since the last hitchhiking event J. Math. Biol. 36 1997 1 23
-
(1997)
J. Math. Biol.
, vol.36
, pp. 1-23
-
-
Perlitz, M.1
Stephan, W.2
-
37
-
-
0041817545
-
Estimating the time since the fixation of a beneficial allele
-
M. Przeworski Estimating the time since the fixation of a beneficial allele Genetics 164 2003 1667 1676
-
(2003)
Genetics
, vol.164
, pp. 1667-1676
-
-
Przeworski, M.1
-
39
-
-
0041817539
-
On the use of star-shaped genealogies in inference of coalescence times
-
N.A. Rosenberg, and A.E. Hirsh On the use of star-shaped genealogies in inference of coalescence times Genetics 164 2003 1677 1682
-
(2003)
Genetics
, vol.164
, pp. 1677-1682
-
-
Rosenberg, N.A.1
Hirsh, A.E.2
-
40
-
-
0029076429
-
Natural selection of hemi- and heterozygotes for G6PD deficiency in Africa by resistance to severe malaria
-
C. Ruwende, S. Khoo, R. Snow, S. Yates, D. Kwiatkowski, S. Gupta, P. Warn, C. Allsopp, S. Gilbert, N. Peschu, C. Newbold, B. Greenwood, K. Marsh, and A. Hill Natural selection of hemi- and heterozygotes for G6PD deficiency in Africa by resistance to severe malaria Nature 376 1995 246 249
-
(1995)
Nature
, vol.376
, pp. 246-249
-
-
Ruwende, C.1
Khoo, S.2
Snow, R.3
Yates, S.4
Kwiatkowski, D.5
Gupta, S.6
Warn, P.7
Allsopp, C.8
Gilbert, S.9
Peschu, N.10
Newbold, C.11
Greenwood, B.12
Marsh, K.13
Hill, A.14
-
41
-
-
0037167852
-
Detecting recent positive selection in the human genome from haplotype structure
-
Sabeti, P. C., Reich, D. E., Higgins, J. M., Levine, H. Z., Richter, D. J., Schaffner, S. F., Gabriel, S. B., Platko, J. V., Patterson, N. J., McDonald, G. J., Ackerman, H. C., Campbell, S. J., Altshuler, D., Cooper, R., Kwiatkowski, D., Ward, R., Lander, E.S., 2002. Detecting recent positive selection in the human genome from haplotype structure. Nature 419, 832-837.
-
(2002)
Nature
, vol.419
, pp. 832-837
-
-
Sabeti, P.C.1
Reich, D.E.2
Higgins, J.M.3
Levine, H.Z.4
Richter, D.J.5
Schaffner, S.F.6
Gabriel, S.B.7
Platko, J.V.8
Patterson, N.J.9
McDonald, G.J.10
Ackerman, H.C.11
Campbell, S.J.12
Altshuler, D.13
Cooper, R.14
Kwiatkowski, D.15
Ward, R.16
Lander, E.S.17
-
42
-
-
0036963687
-
Nucleotide variability at G6PD and the signature of malarial selection in humans
-
M.A. Saunders, M.F. Hammer, and M.W. Nachman Nucleotide variability at G6PD and the signature of malarial selection in humans Genetics 162 2002 1849 1861
-
(2002)
Genetics
, vol.162
, pp. 1849-1861
-
-
Saunders, M.A.1
Hammer, M.F.2
Nachman, M.W.3
-
43
-
-
0034494235
-
Most recent common ancestor probability distributions in gene genealogies under selection
-
P.F. Slade Most recent common ancestor probability distributions in gene genealogies under selection Theor. Popul. Biol. 58 2000 291 305
-
(2000)
Theor. Popul. Biol.
, vol.58
, pp. 291-305
-
-
Slade, P.F.1
-
44
-
-
0034884532
-
Simulating genealogies of selected alleles in a population of variable size
-
M. Slatkin Simulating genealogies of selected alleles in a population of variable size Genet. Res. 78 2001 49 57
-
(2001)
Genet. Res.
, vol.78
, pp. 49-57
-
-
Slatkin, M.1
-
45
-
-
0025951996
-
Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations
-
R. R.
-
M. Slatkin, Hudson R. R. Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations Genetics 129 1991 555 562
-
(1991)
Genetics
, vol.129
, pp. 555-562
-
-
Slatkin, M.1
Hudson, R.R.2
-
46
-
-
4644333804
-
Selsim: A program to simulate population genetic data with selection and recombination
-
to appear.
-
Spencer, C., Coop, G., 2004. Selsim: a program to simulate population genetic data with selection and recombination. Bioinformatics, to appear.
-
(2004)
Bioinformatics
-
-
Spencer, C.1
Coop, G.2
-
47
-
-
0002242481
-
Inference under the coalescent
-
D.J. Balding M. Bishop C. Cannings Wiley Chichester
-
M. Stephens Inference under the coalescent D.J. Balding M. Bishop C. Cannings Handbook of Statistical Genetics 2001 Wiley Chichester 213 238
-
(2001)
Handbook of Statistical Genetics
, pp. 213-238
-
-
Stephens, M.1
-
48
-
-
0034354581
-
Inference in molecular population genetics
-
M. Stephens, and P. Donnelly Inference in molecular population genetics J. R. Stat. Soc. B 62 2000 605 655
-
(2000)
J. R. Stat. Soc. B
, vol.62
, pp. 605-655
-
-
Stephens, M.1
Donnelly, P.2
-
49
-
-
0344585415
-
Ancestral inference in population genetics models with selection
-
M. Stephens, and P. Donnelly Ancestral inference in population genetics models with selection Aust. N. Z. J. Stat. 45 2003 395 430
-
(2003)
Aust. N. Z. J. Stat.
, vol.45
, pp. 395-430
-
-
Stephens, M.1
Donnelly, P.2
-
50
-
-
0035919696
-
Haplotype diversity and linkage disequilibrium at human G6PD: Recent origin of alleles that confer malarial resistance
-
S.A. Tishkoff, R. Varkonyi, N. Cahinhinan, S. Abbes, G. Argyropoulos, G. Destro-Bisol, A. Drousiotou, B. Dangerfield, G. Lefranc, J. Loiselet, A. Piro, M.F. Stoneking, A. Tagarelli, G. Tagarelli, E.H. Touma, S.M. Williams, and A.G. Clark Haplotype diversity and linkage disequilibrium at human G6PD recent origin of alleles that confer malarial resistance Science 293 2001 455 462
-
(2001)
Science
, vol.293
, pp. 455-462
-
-
Tishkoff, S.A.1
Varkonyi, R.2
Cahinhinan, N.3
Abbes, S.4
Argyropoulos, G.5
Destro-Bisol, G.6
Drousiotou, A.7
Dangerfield, B.8
Lefranc, G.9
Loiselet, J.10
Piro, A.11
Stoneking, M.F.12
Tagarelli, A.13
Tagarelli, G.14
Touma, E.H.15
Williams, S.M.16
Clark, A.G.17
-
51
-
-
0036842917
-
Evidence for balancing selection from nucleotide sequence analyses of human G6PD
-
B.C. Verrelli, J.H. McDonald, G. Argyropoulos, G. Destro-Bisol, A. Froment, A. Drousiotou, G. Lefranc, A. Helal, J. Loiselet, and S.A. Tishkoff Evidence for balancing selection from nucleotide sequence analyses of human G6PD Am. J. Hum. Genet. 71 2002 1112 1128
-
(2002)
Am. J. Hum. Genet.
, vol.71
, pp. 1112-1128
-
-
Verrelli, B.C.1
McDonald, J.H.2
Argyropoulos, G.3
Destro-Bisol, G.4
Froment, A.5
Drousiotou, A.6
Lefranc, G.7
Helal, A.8
Loiselet, J.9
Tishkoff, S.A.10
-
52
-
-
0016491430
-
On the number of segregating sites in genetical models without recombination
-
G.A. Watterson On the number of segregating sites in genetical models without recombination Theor. Popul. Biol. 7 1975 256 276
-
(1975)
Theor. Popul. Biol.
, vol.7
, pp. 256-276
-
-
Watterson, G.A.1
-
53
-
-
0037503021
-
Inferences from DNA data: Population histories, evolutionary processes and forensic match probabilities
-
I.J. Wilson, M.E. Weale, and D.J. Balding Inferences from DNA data population histories, evolutionary processes and forensic match probabilities J. R. Stat. Soc. A 166 2003 155 187
-
(2003)
J. R. Stat. Soc. a
, vol.166
, pp. 155-187
-
-
Wilson, I.J.1
Weale, M.E.2
Balding, D.J.3
|