-
1
-
-
23144435334
-
The multilocus sequence typing network: mlst.net
-
Aanensen DM, Spratt BG (2005) The multilocus sequence typing network: mlst.net. Nucleic Acids Research, 33, W728–W733.
-
(2005)
Nucleic Acids Research
, vol.33
, pp. W728-W733
-
-
Aanensen, D.M.1
Spratt, B.G.2
-
2
-
-
84884706339
-
Biogeography of scorpions in the Pseudouroctonus minimus complex (Vaejovidae) from south-western North America: implications of ecological specialization for pre-Quaternary diversification
-
Bryson RW, Savary WE, Prendini L (2013) Biogeography of scorpions in the Pseudouroctonus minimus complex (Vaejovidae) from south-western North America: implications of ecological specialization for pre-Quaternary diversification. Journal of Biogeography, 40, 1850–1860.
-
(2013)
Journal of Biogeography
, vol.40
, pp. 1850-1860
-
-
Bryson, R.W.1
Savary, W.E.2
Prendini, L.3
-
3
-
-
0036943052
-
Fast and accurate phylogeny reconstruction algorithms based on the minimum-evolution principle
-
Desper R, Gascuel O (2002) Fast and accurate phylogeny reconstruction algorithms based on the minimum-evolution principle. Journal of Computational Biology, 9, 687–705.
-
(2002)
Journal of Computational Biology
, vol.9
, pp. 687-705
-
-
Desper, R.1
Gascuel, O.2
-
4
-
-
0030807655
-
BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data
-
Gascuel O (1997) BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Molecular Biology and Evolution, 14, 685–695.
-
(1997)
Molecular Biology and Evolution
, vol.14
, pp. 685-695
-
-
Gascuel, O.1
-
5
-
-
14844359279
-
hierfstat, a package for r to compute and test hierarchical F-statistics
-
Goudet J (2005) hierfstat, a package for r to compute and test hierarchical F-statistics. Molecular Ecology Notes, 5, 184–186.
-
(2005)
Molecular Ecology Notes
, vol.5
, pp. 184-186
-
-
Goudet, J.1
-
6
-
-
84925436786
-
Estimating the temporal and spatial extent of gene flow among sympatric high-elevation lizard populations (genus Sceloporus) in southern Mexican highlands
-
Grummer JA, Calderon-Espinosa ML, Nieto-Montes de Oca A, Smith EN, Mendez-de la Cruz FR, Leache AD (2015) Estimating the temporal and spatial extent of gene flow among sympatric high-elevation lizard populations (genus Sceloporus) in southern Mexican highlands. Molecular Ecology, 24, 1523–1542.
-
(2015)
Molecular Ecology
, vol.24
, pp. 1523-1542
-
-
Grummer, J.A.1
Calderon-Espinosa, M.L.2
Nieto-Montes de Oca, A.3
Smith, E.N.4
Mendez-de la Cruz, F.R.5
Leache, A.D.6
-
7
-
-
84872515273
-
Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study
-
Harris SR, Cartwright EJP, Török ME et al. (2013) Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study. The Lancet Infectious Diseases, 13, 130–136.
-
(2013)
The Lancet Infectious Diseases
, vol.13
, pp. 130-136
-
-
Harris, S.R.1
Cartwright, E.J.P.2
Török, M.E.3
-
8
-
-
84907244900
-
The influence of sampling design on species tree inference: a new relationship for the New World chickadees (Aves: Poecile)
-
Harris RB, Carling MD, Lovette IJ (2014) The influence of sampling design on species tree inference: a new relationship for the New World chickadees (Aves: Poecile). Evolution, 68, 501–513.
-
(2014)
Evolution
, vol.68
, pp. 501-513
-
-
Harris, R.B.1
Carling, M.D.2
Lovette, I.J.3
-
10
-
-
44349095887
-
adegenet: a R package for the multivariate analysis of genetic markers
-
Jombart T (2008) adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics, 24, 1403–1405.
-
(2008)
Bioinformatics
, vol.24
, pp. 1403-1405
-
-
Jombart, T.1
-
11
-
-
80054949793
-
adegenet 1.3-1: new tools for the analysis of genome-wide SNP data
-
Jombart T, Ahmed I (2011) adegenet 1.3-1: new tools for the analysis of genome-wide SNP data. Bioinformatics, 27, 3070–3071.
-
(2011)
Bioinformatics
, vol.27
, pp. 3070-3071
-
-
Jombart, T.1
Ahmed, I.2
-
12
-
-
45549099975
-
Revealing cryptic spatial patterns in genetic variability by a new multivariate method
-
Jombart T, Devillard S, Dufour A-B, Pontier D (2008) Revealing cryptic spatial patterns in genetic variability by a new multivariate method. Heredity, 101, 92–103.
-
(2008)
Heredity
, vol.101
, pp. 92-103
-
-
Jombart, T.1
Devillard, S.2
Dufour, A.-B.3
Pontier, D.4
-
13
-
-
63149104033
-
Genetic markers in the playground of multivariate analysis
-
Jombart T, Pontier D, Dufour A-B (2009) Genetic markers in the playground of multivariate analysis. Heredity, 102, 330–341.
-
(2009)
Heredity
, vol.102
, pp. 330-341
-
-
Jombart, T.1
Pontier, D.2
Dufour, A.-B.3
-
14
-
-
77955018899
-
adephylo: new tools for investigating the phylogenetic signal in biological traits
-
Jombart T, Balloux F, Dray S (2010a) adephylo: new tools for investigating the phylogenetic signal in biological traits. Bioinformatics, 26, 1907–1909.
-
(2010)
Bioinformatics
, vol.26
, pp. 1907-1909
-
-
Jombart, T.1
Balloux, F.2
Dray, S.3
-
15
-
-
77957919360
-
Discriminant analysis of principal components: a new method for the analysis of genetically structured populations
-
Jombart T, Devillard S, Balloux F (2010b) Discriminant analysis of principal components: a new method for the analysis of genetically structured populations. BMC Genetics, 11, 94.
-
(2010)
BMC Genetics
, vol.11
, pp. 94
-
-
Jombart, T.1
Devillard, S.2
Balloux, F.3
-
17
-
-
77953882250
-
Picante: R tools for integrating phylogenies and ecology
-
Kembel SW, Cowan PD, Helmus MR et al. (2010) Picante: R tools for integrating phylogenies and ecology. Bioinformatics, 26, 1463–1464.
-
(2010)
Bioinformatics
, vol.26
, pp. 1463-1464
-
-
Kembel, S.W.1
Cowan, P.D.2
Helmus, M.R.3
-
18
-
-
70450233546
-
Estimating species trees: methods of phylogenetic analysis when there is incongruence across genes
-
Knowles LL (2009) Estimating species trees: methods of phylogenetic analysis when there is incongruence across genes. Systematic Biology, 58, 463–467.
-
(2009)
Systematic Biology
, vol.58
, pp. 463-467
-
-
Knowles, L.L.1
-
19
-
-
33750290454
-
Multilocus sequence typing of bacteria
-
Maiden MCJ (2006) Multilocus sequence typing of bacteria. Annual Review of Microbiology, 60, 561–588.
-
(2006)
Annual Review of Microbiology
, vol.60
, pp. 561-588
-
-
Maiden, M.C.J.1
-
21
-
-
77949527981
-
pegas: an R package for population genetics with an integrated-modular approach
-
Paradis E (2010) pegas: an R package for population genetics with an integrated-modular approach. Bioinformatics, 26, 419–420.
-
(2010)
Bioinformatics
, vol.26
, pp. 419-420
-
-
Paradis, E.1
-
22
-
-
1042304216
-
APE: analyses of phylogenetics and evolution in R language
-
Paradis E, Claude J, Strimmer K (2004) APE: analyses of phylogenetics and evolution in R language. Bioinformatics, 20, 289–290.
-
(2004)
Bioinformatics
, vol.20
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
-
25
-
-
33750437728
-
Widespread discordance of gene trees with species tree in Drosophila: evidence for incomplete lineage sorting
-
Pollard DA, Iyer VN, Moses AM, Eisen MB (2006) Widespread discordance of gene trees with species tree in Drosophila: evidence for incomplete lineage sorting. PLoS Genetics, 2, e173.
-
(2006)
PLoS Genetics
, vol.2
-
-
Pollard, D.A.1
Iyer, V.N.2
Moses, A.M.3
Eisen, M.B.4
-
26
-
-
84861739093
-
ape 3.0: new tools for distance-based phylogenetics and evolutionary analysis in R
-
Popescu A-A, Huber KT, Paradis E (2012) ape 3.0: new tools for distance-based phylogenetics and evolutionary analysis in R. Bioinformatics, 28, 1536–1537.
-
(2012)
Bioinformatics
, vol.28
, pp. 1536-1537
-
-
Popescu, A.-A.1
Huber, K.T.2
Paradis, E.3
-
28
-
-
0242365676
-
Genome-scale approaches to resolving incongruence in molecular phylogenies
-
Rokas A, Williams BL, King N, Carroll SB (2003) Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature, 425, 798–804.
-
(2003)
Nature
, vol.425
, pp. 798-804
-
-
Rokas, A.1
Williams, B.L.2
King, N.3
Carroll, S.B.4
-
29
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4, 406–425.
-
(1987)
Molecular Biology and Evolution
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
30
-
-
79951548848
-
phangorn: phylogenetic analysis in R
-
Schliep KP (2011) phangorn: phylogenetic analysis in R. Bioinformatics, 27, 592–593.
-
(2011)
Bioinformatics
, vol.27
, pp. 592-593
-
-
Schliep, K.P.1
-
31
-
-
84908014803
-
Causes, consequences and solutions of phylogenetic incongruence
-
Som A (2015) Causes, consequences and solutions of phylogenetic incongruence. Briefings in Bioinformatics, 16, 536–548.
-
(2015)
Briefings in Bioinformatics
, vol.16
, pp. 536-548
-
-
Som, A.1
-
32
-
-
84926365274
-
Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis
-
Weinert LA, Chaudhuri RR, Wang J et al. (2015) Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis. Nature Communications, 6, 6740.
-
(2015)
Nature Communications
, vol.6
, pp. 6740
-
-
Weinert, L.A.1
Chaudhuri, R.R.2
Wang, J.3
-
33
-
-
0000162362
-
Phylogenetic incongruence: window into genome history and molecular evolution
-
In, (ed., Douglas ES, Pamela SS, Jeff JD, Kluwer Academic Publisher, Norwell, Massachusetts
-
Wendel JF, Doyle JJ (1998) Phylogenetic incongruence: window into genome history and molecular evolution. In: Molecular Systematics of Plants II(ed. Douglas ES, Pamela SS, Jeff JD), pp. 265–296. Kluwer Academic Publisher, Norwell, Massachusetts.
-
(1998)
Molecular Systematics of Plants II
, pp. 265-296
-
-
Wendel, J.F.1
Doyle, J.J.2
|