메뉴 건너뛰기




Volumn 145, Issue 16, 2016, Pages

Communication: Understanding molecular representations in machine learning: The role of uniqueness and target similarity

Author keywords

[No Author keywords available]

Indexed keywords

ARTIFICIAL INTELLIGENCE; CHEMICAL BONDS; ELECTRON AFFINITY; ELECTRONIC PROPERTIES; IONIZATION POTENTIAL; LEARNING SYSTEMS; MOLECULES; POTENTIAL ENERGY; QUANTUM THEORY; SPECIFIC HEAT;

EID: 84994037361     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.4964627     Document Type: Article
Times cited : (316)

References (34)
  • 2
    • 0030188747 scopus 로고    scopus 로고
    • A numerical study on learning curves in stochastic multilayer feedforward networks
    • K.-R. Müller, M. Finke, N. Murata, K. Schulten, and S. Amari, "A numerical study on learning curves in stochastic multilayer feedforward networks," Neural Comput. 8, 1085-1106 (1996). 10.1162/neco.1996.8.5.1085
    • (1996) Neural Comput. , vol.8 , pp. 1085-1106
    • Müller, K.-R.1    Finke, M.2    Murata, N.3    Schulten, K.4    Amari, S.5
  • 3
    • 84984763696 scopus 로고    scopus 로고
    • Chemical space
    • P. Kirkpatrick and C. Ellis, "Chemical space," Nature 432, 823 (2004). 10.1038/432823a
    • (2004) Nature , vol.432 , pp. 823
    • Kirkpatrick, P.1    Ellis, C.2
  • 4
    • 33750193383 scopus 로고    scopus 로고
    • Molecular grand-canonical ensemble density functional theory and exploration of chemical space
    • O. A. von Lilienfeld and M. E. Tuckerman, "Molecular grand-canonical ensemble density functional theory and exploration of chemical space," J. Chem. Phys. 125, 154104 (2006). 10.1063/1.2338537
    • (2006) J. Chem. Phys. , vol.125
    • Von Lilienfeld, O.A.1    Tuckerman, M.E.2
  • 5
    • 72049117948 scopus 로고    scopus 로고
    • Accurate ab initio gradients in chemical compound space
    • O. A. von Lilienfeld, "Accurate ab initio gradients in chemical compound space," J. Chem. Phys. 131, 164102 (2009). 10.1063/1.3249969
    • (2009) J. Chem. Phys. , vol.131
    • Von Lilienfeld, O.A.1
  • 6
    • 84877579003 scopus 로고    scopus 로고
    • First principles view on chemical compound space: Gaining rigorous atomistic control of molecular properties
    • O. A. von Lilienfeld, "First principles view on chemical compound space: Gaining rigorous atomistic control of molecular properties," Int. J. Quantum Chem. 113, 1676-1689 (2013). 10.1002/qua.24375
    • (2013) Int. J. Quantum Chem. , vol.113 , pp. 1676-1689
    • Von Lilienfeld, O.A.1
  • 7
    • 84856512353 scopus 로고    scopus 로고
    • Fast and accurate modeling of molecular atomization energies with machine learning
    • M. Rupp, A. Tkatchenko, K.-R. Müller, and O. A. von Lilienfeld, "Fast and accurate modeling of molecular atomization energies with machine learning," Phys. Rev. Lett. 108, 058301 (2012). 10.1103/PhysRevLett.108.058301
    • (2012) Phys. Rev. Lett. , vol.108
    • Rupp, M.1    Tkatchenko, A.2    Müller, K.-R.3    Von Lilienfeld, O.A.4
  • 9
    • 79953856961 scopus 로고    scopus 로고
    • Atom-centered symmetry functions for constructing high-dimensional neural network potentials
    • J. Behler, "Atom-centered symmetry functions for constructing high-dimensional neural network potentials," J. Chem. Phys. 134, 074106 (2011). 10.1063/1.3553717
    • (2011) J. Chem. Phys. , vol.134
    • Behler, J.1
  • 10
    • 84878571921 scopus 로고    scopus 로고
    • On representing chemical environments
    • A. P. Bartók, R. Kondor, and G. Csányi, "On representing chemical environments," Phys. Rev. B 87, 184115 (2013). 10.1103/PhysRevB.87.184115
    • (2013) Phys. Rev. B , vol.87
    • Bartók, A.P.1    Kondor, R.2    Csányi, G.3
  • 11
    • 84901440781 scopus 로고    scopus 로고
    • How to represent crystal structures for machine learning: Towards fast prediction of electronic properties
    • K. T. Schütt, H. Glawe, F. Brockherde, A. Sanna, K. R. Müller, and E. K. U. Gross, "How to represent crystal structures for machine learning: Towards fast prediction of electronic properties," Phys. Rev. B 89, 205118 (2014). 10.1103/PhysRevB.89.205118
    • (2014) Phys. Rev. B , vol.89
    • Schütt, K.T.1    Glawe, H.2    Brockherde, F.3    Sanna, A.4    Müller, K.R.5    Gross, E.K.U.6
  • 12
    • 84936800622 scopus 로고    scopus 로고
    • Fourier series of atomic radial distribution functions: A molecular fingerprint for machine learning models of quantum chemical properties
    • O. A. von Lilienfeld, R. Ramakrishnan, M. Rupp, and A. Knoll, "Fourier series of atomic radial distribution functions: A molecular fingerprint for machine learning models of quantum chemical properties," Int. J. Quantum Chem. 115, 1084-1093 (2015). 10.1002/qua.24912
    • (2015) Int. J. Quantum Chem. , vol.115 , pp. 1084-1093
    • Von Lilienfeld, O.A.1    Ramakrishnan, R.2    Rupp, M.3    Knoll, A.4
  • 14
    • 84936846648 scopus 로고    scopus 로고
    • Crystal structure representations for machine learning models of formation energies
    • F. Faber, A. Lindmaa, O. A. von Lilienfeld, and R. Armiento, "Crystal structure representations for machine learning models of formation energies," Int. J. Quantum Chem. 115, 1094-1101 (2015). 10.1002/qua.24917
    • (2015) Int. J. Quantum Chem. , vol.115 , pp. 1094-1101
    • Faber, F.1    Lindmaa, A.2    Von Lilienfeld, O.A.3    Armiento, R.4
  • 16
    • 84936800621 scopus 로고    scopus 로고
    • Adaptive machine learning framework to accelerate ab initio molecular dynamics
    • V. Botu and R. Ramprasad, "Adaptive machine learning framework to accelerate ab initio molecular dynamics," Int. J. Quantum Chem. 115, 1074-1083 (2015). 10.1002/qua.24836
    • (2015) Int. J. Quantum Chem. , vol.115 , pp. 1074-1083
    • Botu, V.1    Ramprasad, R.2
  • 17
    • 36849132554 scopus 로고
    • Interaction of the van der Waals type between three atoms
    • B. M. Axilrod and E. Teller, "Interaction of the van der Waals type between three atoms," J. Chem. Phys. 11, 299-300 (1943). 10.1063/1.1723844
    • (1943) J. Chem. Phys. , vol.11 , pp. 299-300
    • Axilrod, B.M.1    Teller, E.2
  • 18
    • 0000583831 scopus 로고
    • Force between nonpolar molecules
    • Y. Muto, "Force between nonpolar molecules," J. Phys. Math. Soc. Jpn. 17, 629-631 (1943).
    • (1943) J. Phys. Math. Soc. Jpn. , vol.17 , pp. 629-631
    • Muto, Y.1
  • 19
    • 0042041206 scopus 로고
    • UFF, a full periodic table force field for molecular mechanics and molecular dynamics simulations
    • A. K. Rappe, C. J. Casewit, K. S. Colwell, W. A. Goddard III, and W. M. Skiff, "UFF, a full periodic table force field for molecular mechanics and molecular dynamics simulations," J. Am. Chem. Soc. 114, 10024-10035 (1992). 10.1021/ja00051a040
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 10024-10035
    • Rappe, A.K.1    Casewit, C.J.2    Colwell, K.S.3    Goddard, W.A.4    Skiff, W.M.5
  • 20
    • 10644250257 scopus 로고
    • Inhomogeneous electron gas
    • P. Hohenberg and W. Kohn, "Inhomogeneous electron gas," Phys. Rev. 136, B864 (1964). 10.1103/PhysRev.136.B864
    • (1964) Phys. Rev. , vol.136 , pp. B864
    • Hohenberg, P.1    Kohn, W.2
  • 21
    • 84969944517 scopus 로고    scopus 로고
    • Comparing molecules and solids across structural and alchemical space
    • S. De, A. P. Bartok, G. Csanyi, and M. Ceriotti, "Comparing molecules and solids across structural and alchemical space," Phys. Chem. Chem. Phys. 18, 13754-13769 (2016). 10.1039/C6CP00415F
    • (2016) Phys. Chem. Chem. Phys. , vol.18 , pp. 13754-13769
    • De, S.1    Bartok, A.P.2    Csanyi, G.3    Ceriotti, M.4
  • 23
    • 84935014439 scopus 로고    scopus 로고
    • Machine learning predictions of molecular properties: Accurate many-body potentials and nonlocality in chemical space
    • K. Hansen, F. Biegler, R. Ramakrishnan, W. Pronobis, O. A. von Lilienfeld, K.-R. Müller, and A. Tkatchenko, "Machine learning predictions of molecular properties: Accurate many-body potentials and nonlocality in chemical space," J. Phys. Chem. Lett. 6, 2326-2331 (2015). 10.1021/acs.jpclett.5b00831
    • (2015) J. Phys. Chem. Lett. , vol.6 , pp. 2326-2331
    • Hansen, K.1    Biegler, F.2    Ramakrishnan, R.3    Pronobis, W.4    Von Lilienfeld, O.A.5    Müller, K.-R.6    Tkatchenko, A.7
  • 24
    • 0347319419 scopus 로고    scopus 로고
    • Comparative assessment of a new nonempirical density functional: Molecules and hydrogen-bonded complexes
    • V. N. Staroverov, G. E. Scuseria, J. Tao, and J. P. Perdew, "Comparative assessment of a new nonempirical density functional: Molecules and hydrogen-bonded complexes," J. Chem. Phys. 119, 12129-12137 (2003). 10.1063/1.1626543
    • (2003) J. Chem. Phys. , vol.119 , pp. 12129-12137
    • Staroverov, V.N.1    Scuseria, G.E.2    Tao, J.3    Perdew, J.P.4
  • 25
    • 0001213712 scopus 로고    scopus 로고
    • Assessment of Gaussian-3 and density functional theories for a larger experimental test set
    • L. A. Curtiss, K. Raghavachari, P. C. Redfern, and J. A. Pople, "Assessment of Gaussian-3 and density functional theories for a larger experimental test set," J. Chem. Phys. 112, 7374-7383 (2000). 10.1063/1.481336
    • (2000) J. Chem. Phys. , vol.112 , pp. 7374-7383
    • Curtiss, L.A.1    Raghavachari, K.2    Redfern, P.C.3    Pople, J.A.4
  • 26
    • 1542405228 scopus 로고    scopus 로고
    • Tests of second-generation and third-generation density functionals for thermochemical kinetics
    • Y. Zhao, J. Pu, B. J. Lynch, and D. G. Truhlar, "Tests of second-generation and third-generation density functionals for thermochemical kinetics," Phys. Chem. Chem. Phys. 6, 673-676 (2004). 10.1039/B316260E
    • (2004) Phys. Chem. Chem. Phys. , vol.6 , pp. 673-676
    • Zhao, Y.1    Pu, J.2    Lynch, B.J.3    Truhlar, D.G.4
  • 27
    • 0242573642 scopus 로고    scopus 로고
    • Small representative benchmarks for thermochemical calculations
    • B. J. Lynch and D. G. Truhlar, "Small representative benchmarks for thermochemical calculations," J. Phys. Chem. A 107, 8996-8999 (2003). 10.1021/jp035287b
    • (2003) J. Phys. Chem. A , vol.107 , pp. 8996-8999
    • Lynch, B.J.1    Truhlar, D.G.2
  • 29
    • 33644803147 scopus 로고    scopus 로고
    • Computation of vertical excitation energies of retinal and analogs: Scope and limitations
    • C. S. López, O. N. Faza, S. L. Estévez, and A. R. de Lera, "Computation of vertical excitation energies of retinal and analogs: Scope and limitations," J. Comput. Chem. 27, 116-123 (2006). 10.1002/jcc.20305
    • (2006) J. Comput. Chem. , vol.27 , pp. 116-123
    • López, C.S.1    Faza, O.N.2    Estévez, S.L.3    De Lera, A.R.4
  • 30
    • 84938679411 scopus 로고    scopus 로고
    • Quantum chemistry structures and properties of 134 kilo molecules
    • R. Ramakrishnan, P. O. Dral, M. Rupp, and O. A. von Lilienfeld, "Quantum chemistry structures and properties of 134 kilo molecules," Sci. Data 1, 140022 (2014). 10.1038/sdata.2014.22
    • (2014) Sci. Data , vol.1
    • Ramakrishnan, R.1    Dral, P.O.2    Rupp, M.3    Von Lilienfeld, O.A.4
  • 31
    • 84869987352 scopus 로고    scopus 로고
    • Enumeration of 166 billion organic small molecules in the chemical universe database GDB-17
    • L. Ruddigkeit, R. van Deursen, L. C. Blum, and J.-L. Reymond, "Enumeration of 166 billion organic small molecules in the chemical universe database GDB-17," J. Chem. Inf. Model. 52, 2864-2875 (2012). 10.1021/ci300415d
    • (2012) J. Chem. Inf. Model. , vol.52 , pp. 2864-2875
    • Ruddigkeit, L.1    Van Deursen, R.2    Blum, L.C.3    Reymond, J.-L.4
  • 32
    • 16244388286 scopus 로고    scopus 로고
    • Virtual exploration of the small-molecule chemical universe below 160 daltons
    • T. Fink, H. Bruggesser, and J.-L. Reymond, "Virtual exploration of the small-molecule chemical universe below 160 daltons," Angew. Chem., Int. Ed. 44, 1504-1508 (2005). 10.1002/anie.200462457
    • (2005) Angew. Chem., Int. Ed. , vol.44 , pp. 1504-1508
    • Fink, T.1    Bruggesser, H.2    Reymond, J.-L.3
  • 33
    • 84904687972 scopus 로고    scopus 로고
    • Toward transferable interatomic van der Waals interactions without electrons: The role of multipole electrostatics and many-body dispersion
    • T. Bereau and O. A. von Lilienfeld, "Toward transferable interatomic van der Waals interactions without electrons: The role of multipole electrostatics and many-body dispersion," J. Chem. Phys. 141, 034101 (2014). 10.1063/1.4885339
    • (2014) J. Chem. Phys. , vol.141
    • Bereau, T.1    Von Lilienfeld, O.A.2
  • 34
    • 84866265918 scopus 로고    scopus 로고
    • Collective many-body van der Waals interactions in molecular systems
    • R. A. DiStasio, O. A. von Lilienfeld, and A. Tkatchenko, "Collective many-body van der Waals interactions in molecular systems," Proc. Natl. Acad. Sci. U. S. A. 109, 14791-14795 (2012). 10.1073/pnas.1208121109
    • (2012) Proc. Natl. Acad. Sci. U. S. A. , vol.109 , pp. 14791-14795
    • DiStasio, R.A.1    Von Lilienfeld, O.A.2    Tkatchenko, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.