메뉴 건너뛰기




Volumn 5, Issue , 2011, Pages

Large-scale analysis of gene expression and connectivity in the rodent brain: Insights through data integration

Author keywords

Connectome; Genome; Neuron; Oligodendrocyte; Transcriptome

Indexed keywords

ARTICLE; BRAIN MAPPING; CAENORHABDITIS ELEGANS; CONNECTOME; GENE EXPRESSION; GENE ONTOLOGY; HOMEOSTASIS; HOUSEKEEPING GENE; IN SITU HYBRIDIZATION; MOUSE; NONHUMAN; OLIGODENDROGLIA; PRINCIPAL COMPONENT ANALYSIS; PROTEIN LOCALIZATION; SACCHAROMYCES CEREVISIAE;

EID: 84993968647     PISSN: None     EISSN: 16625196     Source Type: Journal    
DOI: 10.3389/fninf.2011.00012     Document Type: Article
Times cited : (29)

References (45)
  • 1
    • 79951548200 scopus 로고    scopus 로고
    • Challenges and opportunities in mining neuroscience data
    • Akil, H., Martone, M. E., and Van Essen, D. C. (2011). Challenges and opportunities in mining neuroscience data. Science 331, 708-712.
    • (2011) Science , vol.331 , pp. 708-712
    • Akil, H.1    Martone, M.E.2    Van Essen, D.C.3
  • 3
    • 48249105899 scopus 로고    scopus 로고
    • Using expression profiles of Caenorhabditis elegans neurons to identify genes that mediate synaptic connectivity
    • Baruch, L., Itzkovitz, S., Golan-Mashiach, M., Shapiro, E., and Segal, E. (2008). Using expression profiles of Caenorhabditis elegans neurons to identify genes that mediate synaptic connectivity. PLoS Comput. Biol. 4, e1000120. doi: 10.1371/journal.pcbi.1000120
    • (2008) Plos Comput. Biol , vol.4
    • Baruch, L.1    Itzkovitz, S.2    Golan-Mashiach, M.3    Shapiro, E.4    Segal, E.5
  • 5
    • 70349637517 scopus 로고    scopus 로고
    • The brain atlas concordance problem: Quantitative comparison of anatomical parcellations
    • Bohland, J. W., Bokil, H., Allen, C. B., and Mitra, P. P. (2009a). The brain atlas concordance problem: quantitative comparison of anatomical parcellations. PLoS ONE 4, e7200. doi: 10.1371/journal.pone.0007200
    • (2009) Plos ONE , vol.4
    • Bohland, J.W.1    Bokil, H.2    Allen, C.B.3    Mitra, P.P.4
  • 6
    • 74149083446 scopus 로고    scopus 로고
    • Clustering of spatial gene expression patterns in the mouse brain and comparison with classical neuroanatomy
    • Bohland, J. W., Bokil, H., Pathak, S. D., Lee, C. K., Ng, L., Lau, C., Kuan, C., Hawrylycz, M., and Mitra, P. P. (2009b). Clustering of spatial gene expression patterns in the mouse brain and comparison with classical neuroanatomy. Methods 50, 105-112.
    • (2009) Methods , vol.50 , pp. 105-112
    • Bohland, J.W.1    Bokil, H.2    Pathak, S.D.3    Lee, C.K.4    Ng, L.5    Lau, C.6    Kuan, C.7    Hawrylycz, M.8    Mitra, P.P.9
  • 7
    • 0042209598 scopus 로고    scopus 로고
    • From gene networks to brain networks
    • Bota, M., Dong, H. W., and Swanson, L. W. (2003). From gene networks to brain networks. Nat. Neurosci. 6, 795-799.
    • (2003) Nat. Neurosci , vol.6 , pp. 795-799
    • Bota, M.1    Dong, H.W.2    Swanson, L.W.3
  • 8
    • 24944447969 scopus 로고    scopus 로고
    • Brain architecture management system
    • Bota, M., Dong, H. W., and Swanson, L. W. (2005). Brain architecture management system. Neuroinformatics 3, 15-48.
    • (2005) Neuroinformatics , vol.3 , pp. 15-48
    • Bota, M.1    Dong, H.W.2    Swanson, L.W.3
  • 10
    • 67650925051 scopus 로고    scopus 로고
    • Genomic-anatomic evidence for distinct functional domains in hippocampal field CA1
    • Dong, H. W., Swanson, L. W., Chen, L., Fanselow, M. S., and Toga, A. W. (2009). Genomic-anatomic evidence for distinct functional domains in hippocampal field CA1. Proc. Natl. Acad. Sci. U.S.A. 106, 11794-11799.
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 11794-11799
    • Dong, H.W.1    Swanson, L.W.2    Chen, L.3    Fanselow, M.S.4    Toga, A.W.5
  • 12
    • 79551556509 scopus 로고    scopus 로고
    • Relationships between gene expression and brain wiring in the adult rodent brain
    • French, L., and Pavlidis, P. (2011). Relationships between gene expression and brain wiring in the adult rodent brain. PLoS Comput. Biol. 7, e1001049. doi: 10.1371/journal.pcbi.1001049
    • (2011) Plos Comput. Biol , vol.7
    • French, L.1    Pavlidis, P.2
  • 14
    • 0019366095 scopus 로고
    • Specific and artefactual cellular localizations of S 100 protein: An astrocyte marker in rat cerebellum
    • Ghandour, M. S., Langley, O. K., Labourdette, G., Vincendon, G., and Gombos, G. (1981). Specific and artefactual cellular localizations of S 100 protein: an astrocyte marker in rat cerebellum. Dev. Neurosci. 4, 66-78.
    • (1981) Dev. Neurosci , vol.4 , pp. 66-78
    • Ghandour, M.S.1    Langley, O.K.2    Labourdette, G.3    Vincendon, G.4    Gombos, G.5
  • 15
    • 0018627455 scopus 로고
    • Double labeling immunohistochemical technique provides evidence of the specificity of glial cell markers
    • Ghandour, M. S., Langley, O. K., Vincendon, G., and Gombos, G. (1979). Double labeling immunohistochemical technique provides evidence of the specificity of glial cell markers. J. Histochem. Cytochem. 27, 1634-1637.
    • (1979) J. Histochem. Cytochem , vol.27 , pp. 1634-1637
    • Ghandour, M.S.1    Langley, O.K.2    Vincendon, G.3    Gombos, G.4
  • 16
    • 0018864523 scopus 로고
    • Immunochemical and immunohistochemical study of carbonic anhydrase II in adult rat cerebellum: A marker for oligodendrocytes
    • Ghandour, M. S., Langley, O. K., Vincendon, G., Gombos, G., Filippi, D., Limozin, N., Dalmasso, D., and Laurent, G. (1980). Immunochemical and immunohistochemical study of carbonic anhydrase II in adult rat cerebellum: a marker for oligodendrocytes. Neuroscience 5, 559-571.
    • (1980) Neuroscience , vol.5 , pp. 559-571
    • Ghandour, M.S.1    Langley, O.K.2    Vincendon, G.3    Gombos, G.4    Filippi, D.5    Limozin, N.6    Dalmasso, D.7    Laurent, G.8
  • 17
    • 77956712508 scopus 로고    scopus 로고
    • Gene function analysis in complex data sets using Ermine
    • Gillis, J., Mistry, M., and Pavlidis, P. (2010). Gene function analysis in complex data sets using Ermine J. Nat. Protoc. 5, 1148-1159.
    • (2010) J. Nat. Protoc , vol.5 , pp. 1148-1159
    • Gillis, J.1    Mistry, M.2    Pavlidis, P.3
  • 20
    • 33846022377 scopus 로고    scopus 로고
    • Gene expression of Caenorhabditis elegans neurons carries information on their synaptic connectivity
    • Kaufman, A., Dror, G., Meilijson, I., and Ruppin, E. (2006). Gene expression of Caenorhabditis elegans neurons carries information on their synaptic connectivity. PLoS Comput. Biol. 2, e167. doi: 10.1371/journal.pcbi.0020167
    • (2006) Plos Comput. Biol , vol.2
    • Kaufman, A.1    Dror, G.2    Meilijson, I.3    Ruppin, E.4
  • 21
    • 6344245918 scopus 로고    scopus 로고
    • Online retrieval, processing, and visualization of primate connectivity data from the CoCoMac database
    • Kotter, R. (2004). Online retrieval, processing, and visualization of primate connectivity data from the CoCoMac database. Neuroinformatics 2, 127-144.
    • (2004) Neuroinformatics , vol.2 , pp. 127-144
    • Kotter, R.1
  • 24
    • 29744450981 scopus 로고    scopus 로고
    • Neurofilament high molecular weight-green fluorescent protein fusion is normally expressed in neurons and transported in axons: A neuronal marker to investigate the biology of neurofilaments
    • Letournel, F., Bocquet, A., Perrot, R., Dechaume, A., Guinut, F., Eyer, J., and Barthelaix, A. (2006). Neurofilament high molecular weight-green fluorescent protein fusion is normally expressed in neurons and transported in axons: a neuronal marker to investigate the biology of neurofilaments. Neuroscience 137, 103-111.
    • (2006) Neuroscience , vol.137 , pp. 103-111
    • Letournel, F.1    Bocquet, A.2    Perrot, R.3    Dechaume, A.4    Guinut, F.5    Eyer, J.6    Barthelaix, A.7
  • 25
    • 53949102013 scopus 로고    scopus 로고
    • Ome sweet ome: What can the genome tell us about the connectome
    • Lichtman, J. W., and Sanes, J. R. (2008). Ome sweet ome: what can the genome tell us about the connectome? Curr. Opin. Neurobiol. 18, 346-353.
    • (2008) Curr. Opin. Neurobiol , vol.18 , pp. 346-353
    • Lichtman, J.W.1    Sanes, J.R.2
  • 26
    • 77955834422 scopus 로고    scopus 로고
    • Network architecture of the long-distance pathways in the macaque brain
    • Modha, D. S., and Singh, R. (2010). Network architecture of the long-distance pathways in the macaque brain. Proc. Natl. Acad. Sci. U.S.A. 107, 13485-13490.
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 13485-13490
    • Modha, D.S.1    Singh, R.2
  • 29
    • 0021127817 scopus 로고
    • Immunocytochemical localization of calcium/calmodulin-dependent protein kinase II in rat brain
    • Ouimet, C. C., Mcguinness, T. L., and Greengard, P. (1984). Immunocytochemical localization of calcium/calmodulin-dependent protein kinase II in rat brain. Proc. Natl. Acad. Sci. U.S.A. 81, 5604-5608.
    • (1984) Proc. Natl. Acad. Sci. U.S.A. , vol.81 , pp. 5604-5608
    • Ouimet, C.C.1    McGuinness, T.L.2    Greengard, P.3
  • 30
    • 0024548195 scopus 로고
    • Immunocytochemical characterization of neuron-rich rat brain primary cultures: Calbindin D28K as marker of a neuronal subpopulation
    • Pfeiffer, B., Norman, A. W., and Hamprecht, B. (1989). Immunocytochemical characterization of neuron-rich rat brain primary cultures: calbindin D28K as marker of a neuronal subpopulation. Brain Res. 476, 120-128.
    • (1989) Brain Res , vol.476 , pp. 120-128
    • Pfeiffer, B.1    Norman, A.W.2    Hamprecht, B.3
  • 31
    • 33745437702 scopus 로고    scopus 로고
    • The proteomes of neurotransmitter receptor complexes form modular networks with distributed functionality underlying plasticity and behaviour
    • Pocklington, A. J., Cumiskey, M., Armstrong, J. D., and Grant, S. G. (2006). The proteomes of neurotransmitter receptor complexes form modular networks with distributed functionality underlying plasticity and behaviour. Mol. Syst. Biol. 2, 2006:0023.
    • (2006) Mol. Syst. Biol. , vol.2
    • Pocklington, A.J.1    Cumiskey, M.2    Armstrong, J.D.3    Grant, S.G.4
  • 32
    • 34247516542 scopus 로고    scopus 로고
    • Transcriptional regulation of vertebrate axon guidance and synapse formation
    • Polleux, F., Ince-Dunn, G., and Ghosh, A. (2007). Transcriptional regulation of vertebrate axon guidance and synapse formation. Nat. Rev. Neurosci. 8, 331-340.
    • (2007) Nat. Rev. Neurosci , vol.8 , pp. 331-340
    • Polleux, F.1    Ince-Dunn, G.2    Ghosh, A.3
  • 33
    • 0037107121 scopus 로고    scopus 로고
    • Regulation of synaptic plasticity genes during consolidation of fear conditioning
    • Ressler, K. J., Paschall, G., Zhou, X. L., and Davis, M. (2002). Regulation of synaptic plasticity genes during consolidation of fear conditioning. J. Neurosci. 22, 7892-7902.
    • (2002) J. Neurosci , vol.22 , pp. 7892-7902
    • Ressler, K.J.1    Paschall, G.2    Zhou, X.L.3    Davis, M.4
  • 34
    • 0022920956 scopus 로고
    • Irreversible effects of dichloromethane on the brain after long term exposure: A quantitative study of DNA and the glial cell marker proteins S-100 and GFA
    • Rosengren, L. E., Kjellstrand, P., Aurell, A., and Haglid, K. G. (1986). Irreversible effects of dichloromethane on the brain after long term exposure: a quantitative study of DNA and the glial cell marker proteins S-100 and GFA. Br. J. Ind. Med. 43, 291-299.
    • (1986) Br. J. Ind. Med , vol.43 , pp. 291-299
    • Rosengren, L.E.1    Kjellstrand, P.2    Aurell, A.3    Haglid, K.G.4
  • 35
    • 79954516559 scopus 로고    scopus 로고
    • The human connectome: A complex network
    • Sporns, O. (2011). The human connectome: a complex network. Ann. N. Y. Acad. Sci. 1224, 109-125.
    • (2011) Ann. N. Y. Acad. Sci , vol.1224 , pp. 109-125
    • Sporns, O.1
  • 36
    • 31144436747 scopus 로고    scopus 로고
    • The human connectome: A structural description of the human brain
    • Sporns, O., Tononi, G., and Kotter, R. (2005). The human connectome: a structural description of the human brain. PLoS Comput. Biol. 1, e42. doi: 10.1371/journal.pcbi.0010042
    • (2005) Plos Comput. Biol , vol.1
    • Sporns, O.1    Tononi, G.2    Kotter, R.3
  • 37
    • 0034728115 scopus 로고    scopus 로고
    • Coordinate-independent mapping of structural and functional data by objective relational transformation (ORT)
    • Stephan, K. E., Zilles, K., and Kotter, R. (2000). Coordinate-independent mapping of structural and functional data by objective relational transformation (ORT). Philos. Trans. R. Soc. Lond. B Biol. Sci. 355, 37-54.
    • (2000) Philos. Trans. R. Soc. Lond. B Biol. Sci , vol.355 , pp. 37-54
    • Stephan, K.E.1    Zilles, K.2    Kotter, R.3
  • 40
    • 78650538248 scopus 로고    scopus 로고
    • Foundational model of structural connectivity in the nervous system with a schema for wiring diagrams, connectome, and basic plan architecture
    • Swanson, L. W., and Bota, M. (2010). Foundational model of structural connectivity in the nervous system with a schema for wiring diagrams, connectome, and basic plan architecture. Proc. Natl. Acad. Sci. U.S.A. 107, 20610-20617.
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 20610-20617
    • Swanson, L.W.1    Bota, M.2
  • 41
    • 33747872850 scopus 로고    scopus 로고
    • Computational inference of the molecular logic for synaptic connectivity in C. Elegans
    • Varadan, V., Miller, D. M. III, and Anastassiou, D. (2006). Computational inference of the molecular logic for synaptic connectivity in C. elegans. Bioinformatics 22, e497-e506.
    • (2006) Bioinformatics , vol.22 , pp. e497-e506
    • Varadan, V.1    Miller, D.2    Anastassiou, D.3
  • 44
    • 79958167043 scopus 로고    scopus 로고
    • Gene expression in the rodent brain is associated with its regional connectivity
    • Wolf, L., Goldberg, C., Manor, N., Sharan, R., and Ruppin, E. (2011). Gene expression in the rodent brain is associated with its regional connectivity. PLoS Comput. Biol. 7, e1002040. doi: 10.1371/journal.pcbi.1002040
    • (2011) Plos Comput. Biol , vol.7
    • Wolf, L.1    Goldberg, C.2    Manor, N.3    Sharan, R.4    Ruppin, E.5
  • 45
    • 17444421921 scopus 로고    scopus 로고
    • Age related changes of various markers of astrocytes in senescence-accelerated mice hippocampus
    • Wu, Y., Zhang, A. Q., and Yew, D. T. (2005). Age related changes of various markers of astrocytes in senescence-accelerated mice hippocampus. Neurochem. Int. 46, 565-574.
    • (2005) Neurochem. Int , vol.46 , pp. 565-574
    • Wu, Y.1    Zhang, A.Q.2    Yew, D.T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.