메뉴 건너뛰기




Volumn 4, Issue 7, 2008, Pages

Using expression profiles of Caenorhabditis elegans neurons to identify genes that mediate synaptic connectivity

Author keywords

[No Author keywords available]

Indexed keywords

GENE EXPRESSION;

EID: 48249105899     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1000120     Document Type: Article
Times cited : (31)

References (44)
  • 2
    • 0021837398 scopus 로고
    • Neuronal connectivity in Caenorhabditis elegans
    • White JG (1985) Neuronal connectivity in Caenorhabditis elegans. Trends Neurosci 8: 277-283.
    • (1985) Trends Neurosci , vol.8 , pp. 277-283
    • White, J.G.1
  • 4
    • 78651127719 scopus 로고
    • Chemoaffinity in the orderly growth of nerve fiber patterns and connections
    • Sperry RW (1963) Chemoaffinity in the orderly growth of nerve fiber patterns and connections. Proc Natl Acad Sci USA 50: 703-710.
    • (1963) Proc Natl Acad Sci USA , vol.50 , pp. 703-710
    • Sperry, R.W.1
  • 5
    • 84982061706 scopus 로고
    • Effect of 180 degree rotation of the retinal field on visuomotor coordination
    • Sperry RW (1943) Effect of 180 degree rotation of the retinal field on visuomotor coordination. J Exp Zool 92: 263-279.
    • (1943) J Exp Zool , vol.92 , pp. 263-279
    • Sperry, R.W.1
  • 6
    • 0002264890 scopus 로고
    • Restoration of vision after crossing of optic nerves and after transplantation of eye
    • Sperry RW (1945) Restoration of vision after crossing of optic nerves and after transplantation of eye. J Exp Zool 8: 15-28.
    • (1945) J Exp Zool , vol.8 , pp. 15-28
    • Sperry, R.W.1
  • 7
    • 0242391983 scopus 로고    scopus 로고
    • Sperry and Hebb: Oil and vinegar?
    • Cline H (2003) Sperry and Hebb: oil and vinegar? Trends Neurosci 26: 655-661.
    • (2003) Trends Neurosci , vol.26 , pp. 655-661
    • Cline, H.1
  • 8
    • 33646131607 scopus 로고    scopus 로고
    • The molecular diversity of Dscam is functionally required for neuronal wiring specificity in Drosophila
    • Chen B, Kondo M, Garnier A, Watson F, Püettmann-Holgado R, et al. (2006) The molecular diversity of Dscam is functionally required for neuronal wiring specificity in Drosophila. Cell 125: 607-620.
    • (2006) Cell , vol.125 , pp. 607-620
    • Chen, B.1    Kondo, M.2    Garnier, A.3    Watson, F.4    Püettmann-Holgado, R.5
  • 9
    • 0033166657 scopus 로고    scopus 로고
    • The diversity of cadherins and implications for a synaptic adhesive code in the CNS
    • Shapiro L, Colman DR (1999) The diversity of cadherins and implications for a synaptic adhesive code in the CNS. Neuron 23: 427-430.
    • (1999) Neuron , vol.23 , pp. 427-430
    • Shapiro, L.1    Colman, D.R.2
  • 10
    • 1642634997 scopus 로고    scopus 로고
    • Synaptic specificity is generated by the synaptic guidepost protein SYG-2 and its receptor, SYG-1
    • Shen K, Fetter RD, Bargmann CI (2004) Synaptic specificity is generated by the synaptic guidepost protein SYG-2 and its receptor, SYG-1. Cell 116: 869-881.
    • (2004) Cell , vol.116 , pp. 869-881
    • Shen, K.1    Fetter, R.D.2    Bargmann, C.I.3
  • 11
    • 33846022377 scopus 로고    scopus 로고
    • Gene expression of Caenorhabditis elegans neurons carries information on their synaptic connectivity
    • doi:10.1371/journal.pcbi.0020167
    • Kaufman A, Dror G, Meilijson I, Ruppin E (2006) Gene expression of Caenorhabditis elegans neurons carries information on their synaptic connectivity. PLoS Comput Biol 2: e167. doi:10.1371/journal.pcbi.0020167.
    • (2006) PLoS Comput Biol , vol.2
    • Kaufman, A.1    Dror, G.2    Meilijson, I.3    Ruppin, E.4
  • 12
    • 33747872850 scopus 로고    scopus 로고
    • Computational inference of the molecular logic for synaptic connectivity in C. elegans
    • Varadan V, Miller DM III, Anastassiou D (2006) Computational inference of the molecular logic for synaptic connectivity in C. elegans. Bioinformatics 22: e497-e506.
    • (2006) Bioinformatics , vol.22
    • Varadan, V.1    Miller III, D.M.2    Anastassiou, D.3
  • 13
    • 48249093359 scopus 로고    scopus 로고
    • Hebb DO (1949) The Organization of Behavior; A Neuropsychological Theory. New York: Wiley. pp xix, 335.
    • Hebb DO (1949) The Organization of Behavior; A Neuropsychological Theory. New York: Wiley. pp xix, 335.
  • 15
    • 34249761849 scopus 로고
    • Learning Bayesian Networks: The Combination of Knowledge and Statistical Data
    • Heckerman D, Geiger D, Chickernig DM (1995) Learning Bayesian Networks: The Combination of Knowledge and Statistical Data. Machine Learning 20: 197-243.
    • (1995) Machine Learning , vol.20 , pp. 197-243
    • Heckerman, D.1    Geiger, D.2    Chickernig, D.M.3
  • 16
    • 0031211090 scopus 로고    scopus 로고
    • A decision-theoretic generalization of on-line learning and an application to boosting
    • Freund Y, Schapire RE (1997) A decision-theoretic generalization of on-line learning and an application to boosting. J Comput System Sci 55: 119-139.
    • (1997) J Comput System Sci , vol.55 , pp. 119-139
    • Freund, Y.1    Schapire, R.E.2
  • 17
    • 48249152932 scopus 로고    scopus 로고
    • Efron B, Tibshirani R (1993) An Introduction to the Bootstrap. New York: Chapman & Hall. pp xvi, 436.
    • Efron B, Tibshirani R (1993) An Introduction to the Bootstrap. New York: Chapman & Hall. pp xvi, 436.
  • 18
    • 0032535041 scopus 로고    scopus 로고
    • UNC-55, an orphan nuclear hormone receptor, orchestrates synaptic specificity among two classes of motor neurons in Caenorhabditis elegans
    • Zhou HM, Walthall WW (1998) UNC-55, an orphan nuclear hormone receptor, orchestrates synaptic specificity among two classes of motor neurons in Caenorhabditis elegans. J Neurosci 18: 10438-10444.
    • (1998) J Neurosci , vol.18 , pp. 10438-10444
    • Zhou, H.M.1    Walthall, W.W.2
  • 19
    • 0035077317 scopus 로고    scopus 로고
    • The cadherin superfamily: Diversity in form and function
    • Angst BD, Marcozzi C, Magee AI (2001) The cadherin superfamily: diversity in form and function. J Cell Sci 114: 629-641.
    • (2001) J Cell Sci , vol.114 , pp. 629-641
    • Angst, B.D.1    Marcozzi, C.2    Magee, A.I.3
  • 20
    • 0037039163 scopus 로고    scopus 로고
    • The C. elegans hmr-1 gene can encode a neuronal classic cadherin involved in the regulation of axon fasciculation
    • Broadbent ID, Pettitt J (2002) The C. elegans hmr-1 gene can encode a neuronal classic cadherin involved in the regulation of axon fasciculation. Curr Biol 12: 59-63.
    • (2002) Curr Biol , vol.12 , pp. 59-63
    • Broadbent, I.D.1    Pettitt, J.2
  • 21
    • 0032529189 scopus 로고    scopus 로고
    • Caenorhabditis elegans Akt/PKB transduces insulin receptor-like signals from AGE-1 PI3 kinase to the DAF-16 transcription factor
    • Paradis S, Ruvkun G (1998) Caenorhabditis elegans Akt/PKB transduces insulin receptor-like signals from AGE-1 PI3 kinase to the DAF-16 transcription factor. Genes Dev 12: 2488-2498.
    • (1998) Genes Dev , vol.12 , pp. 2488-2498
    • Paradis, S.1    Ruvkun, G.2
  • 22
    • 33748068817 scopus 로고    scopus 로고
    • The insulin/PI 3-kinase pathway regulates salt chemotaxis learning in Caenorhabditis elegans
    • Tomioka M, Adachi T, Suzuki H, Kunitomo H, Schafer WR, et al. (2006) The insulin/PI 3-kinase pathway regulates salt chemotaxis learning in Caenorhabditis elegans. Neuron 51: 613-625.
    • (2006) Neuron , vol.51 , pp. 613-625
    • Tomioka, M.1    Adachi, T.2    Suzuki, H.3    Kunitomo, H.4    Schafer, W.R.5
  • 23
    • 0037453461 scopus 로고    scopus 로고
    • Axons guided by insulin receptor in Drosophila visual system
    • Song J, Wu L, Chen Z, Kohanski RA, Pick L (2003) Axons guided by insulin receptor in Drosophila visual system. Science 300: 502-505.
    • (2003) Science , vol.300 , pp. 502-505
    • Song, J.1    Wu, L.2    Chen, Z.3    Kohanski, R.A.4    Pick, L.5
  • 24
    • 0037088923 scopus 로고    scopus 로고
    • The C domain of netrin UNC-6 silences calcium/calmodulin-dependent protein kinase- and diacylglycerol-dependent axon branching in Caenorhabditis elegans
    • Wang Q, Wadsworth WG (2002) The C domain of netrin UNC-6 silences calcium/calmodulin-dependent protein kinase- and diacylglycerol-dependent axon branching in Caenorhabditis elegans. J Neurosci 22: 2274-2282.
    • (2002) J Neurosci , vol.22 , pp. 2274-2282
    • Wang, Q.1    Wadsworth, W.G.2
  • 25
    • 0030452908 scopus 로고    scopus 로고
    • cdh-3, a gene encoding a member of the cadherin superfamily, functions in epithelial cell morphogenesis in Caenorhabditis elegans
    • Pettitt J, Wood WB, Plasterk RH (1996) cdh-3, a gene encoding a member of the cadherin superfamily, functions in epithelial cell morphogenesis in Caenorhabditis elegans. Development 122: 4149-4157.
    • (1996) Development , vol.122 , pp. 4149-4157
    • Pettitt, J.1    Wood, W.B.2    Plasterk, R.H.3
  • 26
    • 41149166559 scopus 로고    scopus 로고
    • The fat-like cadherin CDH-4 controls axon fasciculation, cell migration and hypodermis and pharynx development in Caenorhabditis elegans
    • Schmitz C, Wacker I, Hutter H (2008) The fat-like cadherin CDH-4 controls axon fasciculation, cell migration and hypodermis and pharynx development in Caenorhabditis elegans. Dev Biol 316: 249-259.
    • (2008) Dev Biol , vol.316 , pp. 249-259
    • Schmitz, C.1    Wacker, I.2    Hutter, H.3
  • 27
    • 0028837546 scopus 로고
    • Mechanosensory signalling in C. elegans mediated by the GLR-1 glutamate receptor
    • Maricq AV, Peckol E, Driscoll M, Bargmann CI (1995) Mechanosensory signalling in C. elegans mediated by the GLR-1 glutamate receptor. Nature 378: 78-81.
    • (1995) Nature , vol.378 , pp. 78-81
    • Maricq, A.V.1    Peckol, E.2    Driscoll, M.3    Bargmann, C.I.4
  • 28
    • 0033011571 scopus 로고    scopus 로고
    • The C. elegans homeodomain gene unc-42 regulates chemosensory and glutamate receptor expression
    • Baran R, Aronoff R, Garriga G (1999) The C. elegans homeodomain gene unc-42 regulates chemosensory and glutamate receptor expression. Development 126: 2241-2251.
    • (1999) Development , vol.126 , pp. 2241-2251
    • Baran, R.1    Aronoff, R.2    Garriga, G.3
  • 29
    • 0035282944 scopus 로고    scopus 로고
    • Differential expression of glutamate receptor subunits in the nervous system of Caenorhabditis elegans and their regulation by the homeodomain protein UNC-42
    • Brockie PJ, Madsen DM, Zheng Y, Mellem J, Maricq AV (2001) Differential expression of glutamate receptor subunits in the nervous system of Caenorhabditis elegans and their regulation by the homeodomain protein UNC-42. J Neurosci 21: 1510-1522.
    • (2001) J Neurosci , vol.21 , pp. 1510-1522
    • Brockie, P.J.1    Madsen, D.M.2    Zheng, Y.3    Mellem, J.4    Maricq, A.V.5
  • 30
    • 0031930963 scopus 로고    scopus 로고
    • Analysis of osm-6, a gene that affects sensory cilium structure and sensory neuron function in Caenorhabditis elegans
    • Collet J, Spike CA, Lundquist EA, Shaw JE, Herman RK (1998) Analysis of osm-6, a gene that affects sensory cilium structure and sensory neuron function in Caenorhabditis elegans. Genetics 148: 187-200.
    • (1998) Genetics , vol.148 , pp. 187-200
    • Collet, J.1    Spike, C.A.2    Lundquist, E.A.3    Shaw, J.E.4    Herman, R.K.5
  • 31
    • 0032966884 scopus 로고    scopus 로고
    • Sensory activity affects sensory axon development in C. elegans
    • Peckol EL, Zallen JA, Yarrow JC, Bargmann CI (1999) Sensory activity affects sensory axon development in C. elegans. Development 126: 1891-1902.
    • (1999) Development , vol.126 , pp. 1891-1902
    • Peckol, E.L.1    Zallen, J.A.2    Yarrow, J.C.3    Bargmann, C.I.4
  • 32
    • 23444445908 scopus 로고    scopus 로고
    • Decreased sensory stimulation reduces behavioral responding, retards development, and alters neuronal connectivity in Caenorhabditis elegans
    • Rose JK, Sangha S, Rai S, Norman KR, Rankin CH (2005) Decreased sensory stimulation reduces behavioral responding, retards development, and alters neuronal connectivity in Caenorhabditis elegans. J Neurosci 25: 7159-7168.
    • (2005) J Neurosci , vol.25 , pp. 7159-7168
    • Rose, J.K.1    Sangha, S.2    Rai, S.3    Norman, K.R.4    Rankin, C.H.5
  • 33
    • 0026571429 scopus 로고    scopus 로고
    • Miller DM, Shen MM, Shamu CE, Burglin TR, Ruvkun G, et al. (1992) C. elegans unc-4 gene encodes a homeodomain protein that determines the pattern of synaptic input to specific motor neurons. Nature 355: 841-845.
    • Miller DM, Shen MM, Shamu CE, Burglin TR, Ruvkun G, et al. (1992) C. elegans unc-4 gene encodes a homeodomain protein that determines the pattern of synaptic input to specific motor neurons. Nature 355: 841-845.
  • 34
    • 25444448797 scopus 로고    scopus 로고
    • Spontaneous evolution of modularity and network motifs
    • Kashtan N, Alon U (2005) Spontaneous evolution of modularity and network motifs. Proc Natl Acad Sci USA 102: 13773-13778.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 13773-13778
    • Kashtan, N.1    Alon, U.2
  • 35
    • 34250173488 scopus 로고    scopus 로고
    • Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans
    • Dupuy D, Bertin N, Hidalgo CA, Venkatesan K, Tu D, et al. (2007) Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans. Nat Biotechnol 25: 663-668.
    • (2007) Nat Biotechnol , vol.25 , pp. 663-668
    • Dupuy, D.1    Bertin, N.2    Hidalgo, C.A.3    Venkatesan, K.4    Tu, D.5
  • 37
    • 48249109066 scopus 로고    scopus 로고
    • Jain AK, Dubes RC (1988) Algorithms for Clustering Data. Englewood Cliffs (New Jersey): Prentice Hall. pp xiv, 320.
    • Jain AK, Dubes RC (1988) Algorithms for Clustering Data. Englewood Cliffs (New Jersey): Prentice Hall. pp xiv, 320.
  • 38
    • 0026043845 scopus 로고
    • The posterior nervous system of the nematode Caenorhabditis elegans: Serial reconstruction of identified neurons and complete pattern of synaptic interactions
    • Hall DH, Russell RL (1991) The posterior nervous system of the nematode Caenorhabditis elegans: serial reconstruction of identified neurons and complete pattern of synaptic interactions. J Neurosci 11: 1-22.
    • (1991) J Neurosci , vol.11 , pp. 1-22
    • Hall, D.H.1    Russell, R.L.2
  • 39
    • 33645297713 scopus 로고    scopus 로고
    • Wiring optimization can relate neuronal structure and function
    • Chen BL, Hall DH, Chklovskii DB (2006) Wiring optimization can relate neuronal structure and function. Proc Natl Acad Sci USA 103: 4723-4728.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 4723-4728
    • Chen, B.L.1    Hall, D.H.2    Chklovskii, D.B.3
  • 40
    • 0024627518 scopus 로고
    • Inferring decision trees using the minimum description length principle
    • Quinlan JR, Rivest RL (1989) Inferring decision trees using the minimum description length principle. Information and Computation 80: 227-248.
    • (1989) Information and Computation , vol.80 , pp. 227-248
    • Quinlan, J.R.1    Rivest, R.L.2
  • 41
    • 0346786584 scopus 로고    scopus 로고
    • Arcing classifiers
    • Breiman L (1998) Arcing classifiers. Ann Stat 26: 801-849.
    • (1998) Ann Stat , vol.26 , pp. 801-849
    • Breiman, L.1
  • 44
    • 33746622299 scopus 로고    scopus 로고
    • Wiring cost in the organization of a biological network
    • Ahn Y-Y, Jeong H, Kim BJ (2006) Wiring cost in the organization of a biological network. Physica A 367: 531-537.
    • (2006) Physica A , vol.367 , pp. 531-537
    • Ahn, Y.-Y.1    Jeong, H.2    Kim, B.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.