메뉴 건너뛰기




Volumn 26, Issue 14, 2016, Pages 1873-1879

Convergent Evolution of Rumen Microbiomes in High-Altitude Mammals

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTATION; ALTITUDE; ANIMAL; BOVINE; CHINA; DOMESTIC SHEEP; EVOLUTION; GENETICS; HIGH THROUGHPUT SEQUENCING; INTESTINE FLORA; METAGENOME; MICROBIOLOGY;

EID: 84992560677     PISSN: 09609822     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cub.2016.05.012     Document Type: Article
Times cited : (272)

References (36)
  • 1
    • 44849103697 scopus 로고    scopus 로고
    • The yak grazing system on the Qinghai-Tibetan plateau and its status
    • 1 Long, R.J., Ding, L.M., Shang, Z.H., Guo, X.H., The yak grazing system on the Qinghai-Tibetan plateau and its status. Rangeland J. 30 (2008), 241–246.
    • (2008) Rangeland J. , vol.30 , pp. 241-246
    • Long, R.J.1    Ding, L.M.2    Shang, Z.H.3    Guo, X.H.4
  • 7
    • 80055100230 scopus 로고    scopus 로고
    • Evidence of cellulose metabolism by the giant panda gut microbiome
    • 7 Zhu, L., Wu, Q., Dai, J., Zhang, S., Wei, F., Evidence of cellulose metabolism by the giant panda gut microbiome. Proc. Natl. Acad. Sci. USA 108 (2011), 17714–17719.
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 17714-17719
    • Zhu, L.1    Wu, Q.2    Dai, J.3    Zhang, S.4    Wei, F.5
  • 10
    • 0035843960 scopus 로고    scopus 로고
    • Factors that alter rumen microbial ecology
    • 10 Russell, J.B., Rychlik, J.L., Factors that alter rumen microbial ecology. Science 292 (2001), 1119–1122.
    • (2001) Science , vol.292 , pp. 1119-1122
    • Russell, J.B.1    Rychlik, J.L.2
  • 11
    • 77954535562 scopus 로고    scopus 로고
    • Microbial ecosystem and methanogenesis in ruminants
    • 11 Morgavi, D.P., Forano, E., Martin, C., Newbold, C.J., Microbial ecosystem and methanogenesis in ruminants. Animal 4 (2010), 1024–1036.
    • (2010) Animal , vol.4 , pp. 1024-1036
    • Morgavi, D.P.1    Forano, E.2    Martin, C.3    Newbold, C.J.4
  • 12
    • 84972113949 scopus 로고
    • The estimation of the digestibility and metabolizable energy content of ruminant feedingstuffs from the gas production when they are incubated with rumen liquor in vitro
    • 12 Menke, K.H., Raab, L., Salewski, A., Steingass, H., Fritz, D., Schneider, W., The estimation of the digestibility and metabolizable energy content of ruminant feedingstuffs from the gas production when they are incubated with rumen liquor in vitro. J. Agric. Sci. 93 (1979), 499–503.
    • (1979) J. Agric. Sci. , vol.93 , pp. 499-503
    • Menke, K.H.1    Raab, L.2    Salewski, A.3    Steingass, H.4    Fritz, D.5    Schneider, W.6
  • 13
    • 78549272973 scopus 로고    scopus 로고
    • Methane emissions from yak (Bos grunniens) steers grazing or kept indoors and fed diets with varying forage:concentrate ratio during the cold season on the Qinghai-Tibetan Plateau
    • 13 Ding, X., Long, R., Kreuzer, M., Mi, J., Yang, B., Methane emissions from yak (Bos grunniens) steers grazing or kept indoors and fed diets with varying forage:concentrate ratio during the cold season on the Qinghai-Tibetan Plateau. Anim. Feed Sci. Technol. 162 (2010), 91–98.
    • (2010) Anim. Feed Sci. Technol. , vol.162 , pp. 91-98
    • Ding, X.1    Long, R.2    Kreuzer, M.3    Mi, J.4    Yang, B.5
  • 14
    • 84867618881 scopus 로고    scopus 로고
    • Comparison of methanogen diversity of yak (Bos grunniens) and cattle (Bos taurus) from the Qinghai-Tibetan plateau, China
    • 14 Huang, X.D., Tan, H.Y., Long, R., Liang, J.B., Wright, A.-D., Comparison of methanogen diversity of yak (Bos grunniens) and cattle (Bos taurus) from the Qinghai-Tibetan plateau, China. BMC Microbiol., 12, 2012, 237.
    • (2012) BMC Microbiol. , vol.12 , pp. 237
    • Huang, X.D.1    Tan, H.Y.2    Long, R.3    Liang, J.B.4    Wright, A.-D.5
  • 18
    • 0026612052 scopus 로고
    • Vitamin B12-dependent propionate production by the ruminal bacterium Prevotella ruminicola 23
    • 18 Strobel, H.J., Vitamin B12-dependent propionate production by the ruminal bacterium Prevotella ruminicola 23. Appl. Environ. Microbiol. 58 (1992), 2331–2333.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 2331-2333
    • Strobel, H.J.1
  • 19
    • 80053227684 scopus 로고    scopus 로고
    • Alternative pathways of carbon dioxide fixation: insights into the early evolution of life?
    • 19 Fuchs, G., Alternative pathways of carbon dioxide fixation: insights into the early evolution of life?. Annu. Rev. Microbiol. 65 (2011), 631–658.
    • (2011) Annu. Rev. Microbiol. , vol.65 , pp. 631-658
    • Fuchs, G.1
  • 20
    • 23944509003 scopus 로고    scopus 로고
    • Acetyl-coenzyme A carboxylase: crucial metabolic enzyme and attractive target for drug discovery
    • 20 Tong, L., Acetyl-coenzyme A carboxylase: crucial metabolic enzyme and attractive target for drug discovery. Cell. Mol. Life Sci. 62 (2005), 1784–1803.
    • (2005) Cell. Mol. Life Sci. , vol.62 , pp. 1784-1803
    • Tong, L.1
  • 22
    • 0003421005 scopus 로고    scopus 로고
    • Molecular Evolution
    • Sinauer
    • 22 Li, W.H., Molecular Evolution. 1997, Sinauer.
    • (1997)
    • Li, W.H.1
  • 23
    • 0015755286 scopus 로고
    • Microbial protein synthesis
    • 23 Thomas, P.C., Microbial protein synthesis. Proc. Nutr. Soc. 32 (1973), 85–91.
    • (1973) Proc. Nutr. Soc. , vol.32 , pp. 85-91
    • Thomas, P.C.1
  • 24
    • 79960992441 scopus 로고    scopus 로고
    • Ruminant Nutrition Symposium: Role of fermentation acid absorption in the regulation of ruminal pH
    • 24 Aschenbach, J.R., Penner, G.B., Stumpff, F., Gäbel, G., Ruminant Nutrition Symposium: Role of fermentation acid absorption in the regulation of ruminal pH. J. Anim. Sci. 89 (2011), 1092–1107.
    • (2011) J. Anim. Sci. , vol.89 , pp. 1092-1107
    • Aschenbach, J.R.1    Penner, G.B.2    Stumpff, F.3    Gäbel, G.4
  • 25
    • 79961003292 scopus 로고    scopus 로고
    • Ruminant Nutrition Symposium: Molecular adaptation of ruminal epithelia to highly fermentable diets
    • 25 Penner, G.B., Steele, M.A., Aschenbach, J.R., McBride, B.W., Ruminant Nutrition Symposium: Molecular adaptation of ruminal epithelia to highly fermentable diets. J. Anim. Sci. 89 (2011), 1108–1119.
    • (2011) J. Anim. Sci. , vol.89 , pp. 1108-1119
    • Penner, G.B.1    Steele, M.A.2    Aschenbach, J.R.3    McBride, B.W.4
  • 26
    • 84898058738 scopus 로고    scopus 로고
    • Ruminal epithelium transcriptome dynamics in response to plane of nutrition and age in young Holstein calves
    • 26 Naeem, A., Drackley, J.K., Lanier, J.S., Everts, R.E., Rodriguez-Zas, S.L., Loor, J.J., Ruminal epithelium transcriptome dynamics in response to plane of nutrition and age in young Holstein calves. Funct. Integr. Genomics 14 (2014), 261–273.
    • (2014) Funct. Integr. Genomics , vol.14 , pp. 261-273
    • Naeem, A.1    Drackley, J.K.2    Lanier, J.S.3    Everts, R.E.4    Rodriguez-Zas, S.L.5    Loor, J.J.6
  • 27
    • 84861760530 scopus 로고    scopus 로고
    • IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
    • 27 Peng, Y., Leung, H.C.M., Yiu, S.M., Chin, F.Y.L., IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth. Bioinformatics 28 (2012), 1420–1428.
    • (2012) Bioinformatics , vol.28 , pp. 1420-1428
    • Peng, Y.1    Leung, H.C.M.2    Yiu, S.M.3    Chin, F.Y.L.4
  • 28
    • 0033214628 scopus 로고    scopus 로고
    • Heuristic approach to deriving models for gene finding
    • 28 Besemer, J., Borodovsky, M., Heuristic approach to deriving models for gene finding. Nucleic Acids Res. 27 (1999), 3911–3920.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 3911-3920
    • Besemer, J.1    Borodovsky, M.2
  • 29
    • 84878728889 scopus 로고    scopus 로고
    • Metagenomic sequencing reveals microbiota and its functional potential associated with periodontal disease
    • 29 Wang, J., Qi, J., Zhao, H., He, S., Zhang, Y., Wei, S., Zhao, F., Metagenomic sequencing reveals microbiota and its functional potential associated with periodontal disease. Sci. Rep., 3, 2013, 1843.
    • (2013) Sci. Rep. , vol.3 , pp. 1843
    • Wang, J.1    Qi, J.2    Zhao, H.3    He, S.4    Zhang, Y.5    Wei, S.6    Zhao, F.7
  • 30
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • 30 Langmead, B., Trapnell, C., Pop, M., Salzberg, S.L., Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, 2009, R25.
    • (2009) Genome Biol. , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 32
    • 84871946825 scopus 로고    scopus 로고
    • Streaming fragment assignment for real-time analysis of sequencing experiments
    • 32 Roberts, A., Pachter, L., Streaming fragment assignment for real-time analysis of sequencing experiments. Nat. Methods 10 (2013), 71–73.
    • (2013) Nat. Methods , vol.10 , pp. 71-73
    • Roberts, A.1    Pachter, L.2
  • 33
    • 84863743086 scopus 로고    scopus 로고
    • Quantification of transcriptome responses of the rumen epithelium to butyrate infusion using RNA-seq Technology
    • 33 Baldwin, R.L. 6th, Wu, S., Li, W., Li, C., Bequette, B.J., Li, R.W., Quantification of transcriptome responses of the rumen epithelium to butyrate infusion using RNA-seq Technology. Gene Regul. Syst. Bio. 6 (2012), 67–80.
    • (2012) Gene Regul. Syst. Bio. , vol.6 , pp. 67-80
    • Baldwin, R.L.1    Wu, S.2    Li, W.3    Li, C.4    Bequette, B.J.5    Li, R.W.6
  • 34
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • 34 Bolstad, B.M., Irizarry, R.A., Åstrand, M., Speed, T.P., A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19 (2003), 185–193.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Åstrand, M.3    Speed, T.P.4
  • 35
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • 35 Huang, W., Sherman, B.T., Lempicki, R.A., Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 4 (2009), 44–57.
    • (2009) Nat. Protoc. , vol.4 , pp. 44-57
    • Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 36
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
    • 36 Huang, W., Sherman, B.T., Lempicki, R.A., Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 37 (2009), 1–13.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 1-13
    • Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.