메뉴 건너뛰기




Volumn 9, Issue 5, 2016, Pages 436-447

Epigenetic Signatures of Cigarette Smoking

(83)  Joehanes, Roby a   Just, Allan C d   Marioni, Riccardo E c   Pilling, Luke C b   Reynolds, Lindsay M d   Mandaviya, Pooja R e   Guan, Weihua a   Xu, Tao c   Elks, Cathy E c   Aslibekyan, Stella d   Moreno Macias, Hortensia p   Smith, Jennifer A f   Brody, Jennifer A g   Dhingra, Radhika h   Yousefi, Paul i   Pankow, James S j   Kunze, Sonja k   Shah, Sonia H j   McRae, Allan F j   Lohman, Kurt j   more..


Author keywords

biomarkers; genome wide association study; meta analysis; methylation; smoking

Indexed keywords

CYTOSINE; GUANINE; PHOSPHATE; GENETIC MARKER; TRANSCRIPTOME;

EID: 84992392020     PISSN: 1942325X     EISSN: 19423268     Source Type: Journal    
DOI: 10.1161/CIRCGENETICS.116.001506     Document Type: Article
Times cited : (654)

References (43)
  • 3
    • 84983059084 scopus 로고    scopus 로고
    • From inflammaging to healthy aging by dietary lifestyle choices: Is epigenetics the key to personalized nutrition?
    • Szarc vel Szic K, Declerck K, Vidaković M, Vanden Berghe W, From inflammaging to healthy aging by dietary lifestyle choices: is epigenetics the key to personalized nutrition? Clin Epigenetics 2015 7 33. doi: 10.1186/s13148-015-0068-2
    • (2015) Clin Epigenetics , vol.7 , pp. 33
    • Szarc Vel Szic, K.1    Declerck, K.2    Vidaković, M.3    Vanden Berghe, W.4
  • 4
    • 79953706343 scopus 로고    scopus 로고
    • Tobacco-smoking-related differential DNA methylation: 27K discovery and replication
    • Breitling LP, Yang R, Korn B, Burwinkel B, Brenner H, Tobacco-smoking-related differential DNA methylation: 27K discovery and replication. Am J Hum Genet 2011 88 450 457. doi: 10.1016/j.ajhg.2011.03.003
    • (2011) Am J Hum Genet , vol.88 , pp. 450-457
    • Breitling, L.P.1    Yang, R.2    Korn, B.3    Burwinkel, B.4    Brenner, H.5
  • 5
    • 84866730439 scopus 로고    scopus 로고
    • Smoking, F2RL3 methylation, and prognosis in stable coronary heart disease
    • Breitling LP, Salzmann K, Rothenbacher D, Burwinkel B, Brenner H, Smoking, F2RL3 methylation, and prognosis in stable coronary heart disease. Eur Heart J 2012 33 2841 2848. doi: 10.1093/eurheartj/ehs091
    • (2012) Eur Heart J , vol.33 , pp. 2841-2848
    • Breitling, L.P.1    Salzmann, K.2    Rothenbacher, D.3    Burwinkel, B.4    Brenner, H.5
  • 6
    • 84863509978 scopus 로고    scopus 로고
    • Cigarette smoking behaviors and time since quitting are associated with differential DNA methylation across the human genome
    • Wan ES, Qiu W, Baccarelli A, Carey VJ, Bacherman H, Rennard SI, Cigarette smoking behaviors and time since quitting are associated with differential DNA methylation across the human genome. Hum Mol Genet 2012 21 3073 3082. doi: 10.1093/hmg/dds135
    • (2012) Hum Mol Genet , vol.21 , pp. 3073-3082
    • Wan, E.S.1    Qiu, W.2    Baccarelli, A.3    Carey, V.J.4    Bacherman, H.5    Rennard, S.I.6
  • 7
    • 84938945657 scopus 로고    scopus 로고
    • Smoking-associated site-specific differential methylation in buccal mucosa in the COPDGene study
    • Wan ES, Qiu W, Carey VJ, Morrow J, Bacherman H, Foreman MG, Smoking-associated site-specific differential methylation in buccal mucosa in the COPDGene study. Am J Respir Cell Mol Biol 2015 53 246 254. doi: 10.1165/rcmb.2014-0103OC
    • (2015) Am J Respir Cell Mol Biol , vol.53 , pp. 246-254
    • Wan, E.S.1    Qiu, W.2    Carey, V.J.3    Morrow, J.4    Bacherman, H.5    Foreman, M.G.6
  • 8
    • 84877870559 scopus 로고    scopus 로고
    • Tobacco smoking leads to extensive genome-wide changes in DNA methylation
    • Zeilinger S, Kühnel B, Klopp N, Baurecht H, Kleinschmidt A, Gieger C, Tobacco smoking leads to extensive genome-wide changes in DNA methylation. PLoS One 2013 8 e63812. doi: 10.1371/journal.pone.0063812
    • (2013) PLoS One , vol.8 , pp. e63812
    • Zeilinger, S.1    Kühnel, B.2    Klopp, N.3    Baurecht, H.4    Kleinschmidt, A.5    Gieger, C.6
  • 10
    • 84873476594 scopus 로고    scopus 로고
    • Epigenome-wide association study in the European Prospective Investigation into Cancer and Nutrition (EPIC-Turin) identifies novel genetic loci associated with smoking
    • Shenker NS, Polidoro S, van Veldhoven K, Sacerdote C, Ricceri F, Birrell MA, Epigenome-wide association study in the European Prospective Investigation into Cancer and Nutrition (EPIC-Turin) identifies novel genetic loci associated with smoking. Hum Mol Genet 2013 22 843 851. doi: 10.1093/hmg/dds488
    • (2013) Hum Mol Genet , vol.22 , pp. 843-851
    • Shenker, N.S.1    Polidoro, S.2    Van Veldhoven, K.3    Sacerdote, C.4    Ricceri, F.5    Birrell, M.A.6
  • 11
    • 84926470294 scopus 로고    scopus 로고
    • Dynamics of smoking-induced genome-wide methylation changes with time since smoking cessation
    • Guida F, Sandanger TM, Castagné R, Campanella G, Polidoro S, Palli D, Dynamics of smoking-induced genome-wide methylation changes with time since smoking cessation. Hum Mol Genet 2015 24 2349 2359. doi: 10.1093/hmg/ddu751
    • (2015) Hum Mol Genet , vol.24 , pp. 2349-2359
    • Guida, F.1    Sandanger, T.M.2    Castagné, R.3    Campanella, G.4    Polidoro, S.5    Palli, D.6
  • 12
    • 84962009899 scopus 로고    scopus 로고
    • The impact of genetic variation and cigarette smoke on DNA methylation in current and former smokers from the COPDGene study
    • Qiu W, Wan E, Morrow J, Cho MH, Crapo JD, Silverman EK, The impact of genetic variation and cigarette smoke on DNA methylation in current and former smokers from the COPDGene study. Epigenetics 2015 10 1064 1073. doi: 10.1080/15592294.2015.1106672
    • (2015) Epigenetics , vol.10 , pp. 1064-1073
    • Qiu, W.1    Wan, E.2    Morrow, J.3    Cho, M.H.4    Crapo, J.D.5    Silverman, E.K.6
  • 13
    • 84944259040 scopus 로고    scopus 로고
    • DNA methylation changes of whole blood cells in response to active smoking exposure in adults: A systematic review of DNA methylation studies
    • Gao X, Jia M, Zhang Y, Breitling LP, Brenner H, DNA methylation changes of whole blood cells in response to active smoking exposure in adults: a systematic review of DNA methylation studies. Clin Epigenetics 2015 7 113. doi: 10.1186/s13148-015-0148-3
    • (2015) Clin Epigenetics , vol.7 , pp. 113
    • Gao, X.1    Jia, M.2    Zhang, Y.3    Breitling, L.P.4    Brenner, H.5
  • 14
    • 84937522502 scopus 로고    scopus 로고
    • Improving phenotypic prediction by combining genetic and epigenetic associations
    • Shah S, Bonder MJ, Marioni RE, Zhu Z, McRae AF, Zhernakova A, BIOS Consortium Improving phenotypic prediction by combining genetic and epigenetic associations. Am J Hum Genet 2015 97 75 85. doi: 10.1016/j.ajhg.2015.05.014
    • (2015) Am J Hum Genet , vol.97 , pp. 75-85
    • Shah, S.1    Bonder, M.J.2    Marioni, R.E.3    Zhu, Z.4    McRae, A.F.5    Zhernakova, A.6
  • 15
    • 38849107498 scopus 로고    scopus 로고
    • Reversible and permanent effects of tobacco smoke exposure on airway epithelial gene expression
    • Beane J, Sebastiani P, Liu G, Brody JS, Lenburg ME, Spira A, Reversible and permanent effects of tobacco smoke exposure on airway epithelial gene expression. Genome Biol 2007 8 R201. doi: 10.1186/gb-2007-8-9-r201
    • (2007) Genome Biol , vol.8 , pp. R201
    • Beane, J.1    Sebastiani, P.2    Liu, G.3    Brody, J.S.4    Lenburg, M.E.5    Spira, A.6
  • 16
    • 84957851166 scopus 로고    scopus 로고
    • DNA methylation profiling of non-small cell lung cancer reveals a COPD-driven immune-related signature
    • Wauters E, Janssens W, Vansteenkiste J, Decaluwé H, Heulens N, Thienpont B, DNA methylation profiling of non-small cell lung cancer reveals a COPD-driven immune-related signature. Thorax 2015 70 1113 1122. doi: 10.1136/thoraxjnl-2015-207288
    • (2015) Thorax , vol.70 , pp. 1113-1122
    • Wauters, E.1    Janssens, W.2    Vansteenkiste, J.3    Decaluwé, H.4    Heulens, N.5    Thienpont, B.6
  • 17
    • 38749109296 scopus 로고    scopus 로고
    • Systematic review and meta-analysis: When one study is just not enough
    • Garg AX, Hackam D, Tonelli M, Systematic review and meta-analysis: when one study is just not enough. Clin J Am Soc Nephrol 2008 3 253 260. doi: 10.2215/CJN.01430307
    • (2008) Clin J Am Soc Nephrol , vol.3 , pp. 253-260
    • Garg, A.X.1    Hackam, D.2    Tonelli, M.3
  • 18
    • 84876806540 scopus 로고    scopus 로고
    • A data-driven approach to preprocessing Illumina 450K methylation array data
    • Pidsley R, Y Wong CC, Volta M, Lunnon K, Mill J, Schalkwyk LC, A data-driven approach to preprocessing Illumina 450K methylation array data. BMC Genomics 2013 14 293. doi: 10.1186/1471-2164-14-293
    • (2013) BMC Genomics , vol.14 , pp. 293
    • Pidsley, R.1    Wong C C, Y.2    Volta, M.3    Lunnon, K.4    Mill, J.5    Schalkwyk, L.C.6
  • 19
    • 84872564830 scopus 로고    scopus 로고
    • A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data
    • Teschendorff AE, Marabita F, Lechner M, Bartlett T, Tegner J, Gomez-Cabrero D, A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data. Bioinformatics 2013 29 189 196. doi: 10.1093/bioinformatics/bts680
    • (2013) Bioinformatics , vol.29 , pp. 189-196
    • Teschendorff, A.E.1    Marabita, F.2    Lechner, M.3    Bartlett, T.4    Tegner, J.5    Gomez-Cabrero, D.6
  • 21
    • 84921316380 scopus 로고    scopus 로고
    • DNA methylation and body-mass index: A genome-wide analysis
    • Dick KJ, Nelson CP, Tsaprouni L, Sandling JK, Aïssi D, Wahl S, DNA methylation and body-mass index: a genome-wide analysis. Lancet 2014 383 1990 1998. doi: 10.1016/S0140-6736(13)62674-4
    • (2014) Lancet , vol.383 , pp. 1990-1998
    • Dick, K.J.1    Nelson, C.P.2    Tsaprouni, L.3    Sandling, J.K.4    Aïssi, D.5    Wahl, S.6
  • 24
    • 77958110812 scopus 로고    scopus 로고
    • Conducting meta-analyses in R with the metafor package
    • Viechtbauer W, Conducting meta-analyses in R with the metafor package. J Stat Softw 2010 36 1 48
    • (2010) J Stat Softw , vol.36 , pp. 1-48
    • Viechtbauer, W.1
  • 25
    • 84992397587 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y, Controlling the false discovery rate: a practical and powerful approach to multiple testing. JSSRB 1995 57 289 300. doi: 10.2307/2346101
    • (1995) JSSRB , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 26
    • 84962129337 scopus 로고    scopus 로고
    • DNA methylation in newborns and maternal smoking in pregnancy: Genome-wide consortium meta-analysis
    • Joubert BR, Felix JF, Yousefi P, Bakulski KM, Just AC, Breton C, DNA methylation in newborns and maternal smoking in pregnancy: genome-wide consortium meta-analysis. Am J Hum Genet 2016 98 680 696. doi: 10.1016/j.ajhg.2016.02.019
    • (2016) Am J Hum Genet , vol.98 , pp. 680-696
    • Joubert, B.R.1    Felix, J.F.2    Yousefi, P.3    Bakulski, K.M.4    Just, A.C.5    Breton, C.6
  • 28
    • 67249117049 scopus 로고    scopus 로고
    • Potential etiologic and functional implications of genome-wide association loci for human diseases and traits
    • Hindorff LA, Sethupathy P, Junkins HA, Ramos EM, Mehta JP, Collins FS, Potential etiologic and functional implications of genome-wide association loci for human diseases and traits. Proc Natl Acad Sci USA 2009 106 9362 9367. doi: 10.1073/pnas.0903103106
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 9362-9367
    • Hindorff, L.A.1    Sethupathy, P.2    Junkins, H.A.3    Ramos, E.M.4    Mehta, J.P.5    Collins, F.S.6
  • 29
    • 75949102155 scopus 로고    scopus 로고
    • Technical note: An R package for fitting generalized linear mixed models in animal breeding
    • Vazquez AI, Bates DM, Rosa GJ, Gianola D, Weigel KA, Technical note: an R package for fitting generalized linear mixed models in animal breeding. J Anim Sci 2010 88 497 504. doi: 10.2527/jas.2009-1952
    • (2010) J Anim Sci , vol.88 , pp. 497-504
    • Vazquez, A.I.1    Bates, D.M.2    Rosa, G.J.3    Gianola, D.4    Weigel, K.A.5
  • 30
    • 0032714352 scopus 로고    scopus 로고
    • Genomic control for association studies
    • Devlin B, Roeder K, Genomic control for association studies. Biometrics 1999 55 997 1004
    • (1999) Biometrics , vol.55 , pp. 997-1004
    • Devlin, B.1    Roeder, K.2
  • 31
    • 23944517220 scopus 로고    scopus 로고
    • The aryl hydrocarbon receptor is a regulator of cigarette smoke induction of the cyclooxygenase and prostaglandin pathways in human lung fibroblasts
    • Martey CA, Baglole CJ, Gasiewicz TA, Sime PJ, Phipps RP, The aryl hydrocarbon receptor is a regulator of cigarette smoke induction of the cyclooxygenase and prostaglandin pathways in human lung fibroblasts. Am J Physiol Lung Cell Mol Physiol 2005 289 L391 L399. doi: 10.1152/ajplung.00062.2005
    • (2005) Am J Physiol Lung Cell Mol Physiol , vol.289 , pp. L391-L399
    • Martey, C.A.1    Baglole, C.J.2    Gasiewicz, T.A.3    Sime, P.J.4    Phipps, R.P.5
  • 32
    • 84994715829 scopus 로고    scopus 로고
    • Correlation of smoking-associated DNA methylation changes in buccal cells with DNA methylation changes in epithelial cancer
    • Teschendorff AE, Yang Z, Wong A, Pipinikas CP, Jiao Y, Jones A, Correlation of smoking-associated DNA methylation changes in buccal cells with DNA methylation changes in epithelial cancer. JAMA Oncol 2015 1 476 485. doi: 10.1001/jamaoncol.2015.1053
    • (2015) JAMA Oncol , vol.1 , pp. 476-485
    • Teschendorff, A.E.1    Yang, Z.2    Wong, A.3    Pipinikas, C.P.4    Jiao, Y.5    Jones, A.6
  • 33
    • 84882966654 scopus 로고    scopus 로고
    • Regular cigarette smoking influences the transsulfuration pathway, endothelial function, and inflammation biomarkers in a sex-gender specific manner in healthy young humans
    • Campesi I, Carru C, Zinellu A, Occhioni S, Sanna M, Palermo M, Regular cigarette smoking influences the transsulfuration pathway, endothelial function, and inflammation biomarkers in a sex-gender specific manner in healthy young humans. Am J Transl Res 2013 5 497 509
    • (2013) Am J Transl Res , vol.5 , pp. 497-509
    • Campesi, I.1    Carru, C.2    Zinellu, A.3    Occhioni, S.4    Sanna, M.5    Palermo, M.6
  • 34
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    • Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci USA 2005 102 15545 15550. doi: 10.1073/pnas.0506580102
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 15545-15550
    • Subramanian, A.1    Tamayo, P.2    Mootha, V.K.3    Mukherjee, S.4    Ebert, B.L.5    Gillette, M.A.6
  • 36
    • 79955860273 scopus 로고    scopus 로고
    • Random-effects model aimed at discovering associations in meta-analysis of genome-wide association studies
    • Han B, Eskin E, Random-effects model aimed at discovering associations in meta-analysis of genome-wide association studies. Am J Hum Genet 2011 88 586 598. doi: 10.1016/j.ajhg.2011.04.014
    • (2011) Am J Hum Genet , vol.88 , pp. 586-598
    • Han, B.1    Eskin, E.2
  • 37
    • 84873576566 scopus 로고    scopus 로고
    • Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis
    • Liu Y, Aryee MJ, Padyukov L, Fallin MD, Hesselberg E, Runarsson A, Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis. Nat Biotechnol 2013 31 142 147. doi: 10.1038/nbt.2487
    • (2013) Nat Biotechnol , vol.31 , pp. 142-147
    • Liu, Y.1    Aryee, M.J.2    Padyukov, L.3    Fallin, M.D.4    Hesselberg, E.5    Runarsson, A.6
  • 38
    • 33744454653 scopus 로고    scopus 로고
    • Regulation of adult bone mass by the zinc finger adapter protein Schnurri-3
    • Jones DC, Wein MN, Oukka M, Hofstaetter JG, Glimcher MJ, Glimcher LH, Regulation of adult bone mass by the zinc finger adapter protein Schnurri-3. Science 2006 312 1223 1227. doi: 10.1126/science.1126313
    • (2006) Science , vol.312 , pp. 1223-1227
    • Jones, D.C.1    Wein, M.N.2    Oukka, M.3    Hofstaetter, J.G.4    Glimcher, M.J.5    Glimcher, L.H.6
  • 39
    • 84943745763 scopus 로고    scopus 로고
    • Lymphoblastoid cell lines reveal associations of adult DNA methylation with childhood and current adversity that are distinct from whole blood associations
    • Suderman M, Pappas JJ, Borghol N, Buxton JL, McArdle WL, Ring SM, Lymphoblastoid cell lines reveal associations of adult DNA methylation with childhood and current adversity that are distinct from whole blood associations. Int J Epidemiol 2015 44 1331 1340. doi: 10.1093/ije/dyv168
    • (2015) Int J Epidemiol , vol.44 , pp. 1331-1340
    • Suderman, M.1    Pappas, J.J.2    Borghol, N.3    Buxton, J.L.4    McArdle, W.L.5    Ring, S.M.6
  • 40
    • 84882884517 scopus 로고    scopus 로고
    • Charting a dynamic DNA methylation landscape of the human genome
    • Ziller MJ, Gu H, Müller F, Donaghey J, Tsai LT, Kohlbacher O, Charting a dynamic DNA methylation landscape of the human genome. Nature 2013 500 477 481. doi: 10.1038/nature12433
    • (2013) Nature , vol.500 , pp. 477-481
    • Ziller, M.J.1    Gu, H.2    Müller, F.3    Donaghey, J.4    Tsai, L.T.5    Kohlbacher, O.6
  • 41
    • 84867176545 scopus 로고    scopus 로고
    • DNA methylation at differentially methylated regions of imprinted genes is resistant to developmental programming by maternal nutrition
    • Ivanova E, Chen JH, Segonds-Pichon A, Ozanne SE, Kelsey G, DNA methylation at differentially methylated regions of imprinted genes is resistant to developmental programming by maternal nutrition. Epigenetics 2012 7 1200 1210. doi: 10.4161/epi.22141
    • (2012) Epigenetics , vol.7 , pp. 1200-1210
    • Ivanova, E.1    Chen, J.H.2    Segonds-Pichon, A.3    Ozanne, S.E.4    Kelsey, G.5
  • 42
    • 84952663150 scopus 로고    scopus 로고
    • Smoking-associated DNA methylation biomarkers and their predictive value for all-cause and cardiovascular mortality
    • Zhang Y, Schöttker B, Florath I, Stock C, Butterbach K, Holleczek B, Smoking-associated DNA methylation biomarkers and their predictive value for all-cause and cardiovascular mortality. Environ Health Perspect 2016 124 67 74. doi: 10.1289/ehp.1409020
    • (2016) Environ Health Perspect , vol.124 , pp. 67-74
    • Zhang, Y.1    Schöttker, B.2    Florath, I.3    Stock, C.4    Butterbach, K.5    Holleczek, B.6
  • 43
    • 84893387036 scopus 로고    scopus 로고
    • F2RL3 methylation as a biomarker of current and lifetime smoking exposures
    • Zhang Y, Yang R, Burwinkel B, Breitling LP, Brenner H, F2RL3 methylation as a biomarker of current and lifetime smoking exposures. Environ Health Perspect 2014 122 131 137. doi: 10.1289/ehp.1306937
    • (2014) Environ Health Perspect , vol.122 , pp. 131-137
    • Zhang, Y.1    Yang, R.2    Burwinkel, B.3    Breitling, L.P.4    Brenner, H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.