메뉴 건너뛰기




Volumn 17, Issue 1, 2016, Pages

Genetic mapping of Pinus flexilis major gene (Cr4) for resistance to white pine blister rust using transcriptome-based SNP genotyping

Author keywords

Disease resistance; Genetic map; Limber pine; Transcriptome de novo assembly; White pine blister rust

Indexed keywords

TRANSCRIPTOME;

EID: 84992135303     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-016-3079-2     Document Type: Article
Times cited : (31)

References (64)
  • 1
    • 84986815919 scopus 로고
    • Stand dynamics of Pinus flexilis-dominated subalpine forests in the Colorado Front Range
    • Rebertus AJ, Burns AJ, Veblen TT. Stand dynamics of Pinus flexilis-dominated subalpine forests in the Colorado Front Range. J Veg Sci. 1991;2:445-58.
    • (1991) J Veg Sci , vol.2 , pp. 445-458
    • Rebertus, A.J.1    Burns, A.J.2    Veblen, T.T.3
  • 2
    • 0034520254 scopus 로고    scopus 로고
    • Morphological variation of Pinus flexilis (Pinaceae), a bird-dispersed pine, across a range of elevations
    • Schoettle AW, Rochelle SG. Morphological variation of Pinus flexilis (Pinaceae), a bird-dispersed pine, across a range of elevations. Am J Bot. 2000;87:1797-806.
    • (2000) Am J Bot , vol.87 , pp. 1797-1806
    • Schoettle, A.W.1    Rochelle, S.G.2
  • 3
    • 77955604696 scopus 로고    scopus 로고
    • Blister rust and western forest biodiversity: ecology, values and outlook for white pines
    • Tomback DF, Achuff P. Blister rust and western forest biodiversity: ecology, values and outlook for white pines. Forest Pathol. 2010;40:186-225.
    • (2010) Forest Pathol , vol.40 , pp. 186-225
    • Tomback, D.F.1    Achuff, P.2
  • 5
    • 84921456707 scopus 로고    scopus 로고
    • Permanent forest plots show accelerating tree mortality in subalpine forests of the Colorado Front Range from 1982 to 2013
    • Smith JM, Paritsis J, Veblen TT, Chapman TB. Permanent forest plots show accelerating tree mortality in subalpine forests of the Colorado Front Range from 1982 to 2013. For Ecol Manage. 2015;341:8-17.
    • (2015) For Ecol Manage , vol.341 , pp. 8-17
    • Smith, J.M.1    Paritsis, J.2    Veblen, T.T.3    Chapman, T.B.4
  • 6
    • 84941686742 scopus 로고    scopus 로고
    • Limber pine in the central and southern Rocky Mountains: Stand conditions and interactions with blister rust, mistletoe, and bark beetles
    • Cleaver CM, Jacobi WR, Burns KS, Means RE. Limber pine in the central and southern Rocky Mountains: Stand conditions and interactions with blister rust, mistletoe, and bark beetles. For Ecol Manage. 2015;358:139-53.
    • (2015) For Ecol Manage , vol.358 , pp. 139-153
    • Cleaver, C.M.1    Jacobi, W.R.2    Burns, K.S.3    Means, R.E.4
  • 8
    • 84907528980 scopus 로고    scopus 로고
    • Genetic resistance to fusiform rust in southern pines and white pine blister rust in white pines-a contrasting tale of two rust pathosystems-current status and future prospects
    • Sniezko RA, Smith J, Liu J-J, Hamelin RC. Genetic resistance to fusiform rust in southern pines and white pine blister rust in white pines-a contrasting tale of two rust pathosystems-current status and future prospects. Forests. 2014;5:2050-83.
    • (2014) Forests , vol.5 , pp. 2050-2083
    • Sniezko, R.A.1    Smith, J.2    Liu, J.-J.3    Hamelin, R.C.4
  • 9
    • 0007576899 scopus 로고
    • White pine blister rust: Simply inherited resistance in sugar pine
    • Kinloch Jr BB, Parks GK, Fowler CW. White pine blister rust: Simply inherited resistance in sugar pine. Can J Bot. 1970;58:1912-4.
    • (1970) Can J Bot , vol.58 , pp. 1912-1914
    • Kinloch, B.B.1    Parks, G.K.2    Fowler, C.W.3
  • 10
    • 0344172568 scopus 로고    scopus 로고
    • A major gene for resistance to white pine blister rust in western white pine from the western Cascade Range
    • Kinloch Jr BB, Sniezko RA, Barnes GD, Greathouse TE. A major gene for resistance to white pine blister rust in western white pine from the western Cascade Range. Phytopathol. 1999;89:861-7.
    • (1999) Phytopathol. , vol.89 , pp. 861-867
    • Kinloch, B.B.1    Sniezko, R.A.2    Barnes, G.D.3    Greathouse, T.E.4
  • 11
    • 0036198162 scopus 로고    scopus 로고
    • Genetic specificity in the white pine-blister rust pathosystem
    • Kinloch Jr BB, Dupper GE. Genetic specificity in the white pine-blister rust pathosystem. Phytopathol. 2002;92:278-80.
    • (2002) Phytopathol. , vol.92 , pp. 278-280
    • Kinloch, B.B.1    Dupper, G.E.2
  • 12
    • 84892186308 scopus 로고    scopus 로고
    • White pine blister rust resistance in limber pine: evidence for a major gene
    • Schoettle AW, Sniezko RA, Kegley A, Burns KS. White pine blister rust resistance in limber pine: evidence for a major gene. Phytopathol. 2014;104:163-73.
    • (2014) Phytopathol. , vol.104 , pp. 163-173
    • Schoettle, A.W.1    Sniezko, R.A.2    Kegley, A.3    Burns, K.S.4
  • 13
    • 0001119910 scopus 로고
    • Current status of the gene-for-gene concept
    • Flor HH. Current status of the gene-for-gene concept. Annu Rev Phytopathol. 1971;9:275-96.
    • (1971) Annu Rev Phytopathol , vol.9 , pp. 275-296
    • Flor, H.H.1
  • 14
    • 0028904128 scopus 로고
    • Random amplified polymorphic DNA markers tightly linked to a gene for resistance to white pine blister rust in sugar pine
    • Devey ME, Mix AD, Kinloch Jr BB, Neale DB. Random amplified polymorphic DNA markers tightly linked to a gene for resistance to white pine blister rust in sugar pine. Proc Natl Acad Sci U S A. 1995;92:2066-70.
    • (1995) Proc Natl Acad Sci U S A , vol.92 , pp. 2066-2070
    • Devey, M.E.1    Mix, A.D.2    Kinloch, B.B.3    Neale, D.B.4
  • 15
    • 33646014449 scopus 로고    scopus 로고
    • Identification and characterization of random amplified polymorphic DNA markers linked to a major gene (Cr2) for resistance to Cronartium ribicola in Pinus monticola
    • Liu J-J, Ekramoddoullah AK, Hunt RS, Zamani A. Identification and characterization of random amplified polymorphic DNA markers linked to a major gene (Cr2) for resistance to Cronartium ribicola in Pinus monticola. Phytopathol. 2006;96:395-9.
    • (2006) Phytopathol. , vol.96 , pp. 395-399
    • Liu, J.-J.1    Ekramoddoullah, A.K.2    Hunt, R.S.3    Zamani, A.4
  • 17
    • 84881413993 scopus 로고    scopus 로고
    • Pivoting the plant immune system from dissection to deployment
    • Dangl JL, Horvath DM, Staskawicz BJ. Pivoting the plant immune system from dissection to deployment. Science. 2013;341:746-51.
    • (2013) Science , vol.341 , pp. 746-751
    • Dangl, J.L.1    Horvath, D.M.2    Staskawicz, B.J.3
  • 18
    • 0346373736 scopus 로고    scopus 로고
    • Isolation, genetic variation and expression of TIR-NBS-LRR resistance gene analogs from limber pine (Pinus monticola Dougl. ex. D. Don.)
    • Liu J-J, Ekramoddoullah AK. Isolation, genetic variation and expression of TIR-NBS-LRR resistance gene analogs from limber pine (Pinus monticola Dougl. ex. D. Don.). Mol Genet Genomics. 2004;270:432-41.
    • (2004) Mol Genet Genomics , vol.270 , pp. 432-441
    • Liu, J.-J.1    Ekramoddoullah, A.K.2
  • 20
    • 84988697103 scopus 로고    scopus 로고
    • Western white pine SNP discovery and high-throughput genotyping for breeding and conservation applications
    • Liu J-J, Sniezko RA, Sturrock RN, Chen H. Western white pine SNP discovery and high-throughput genotyping for breeding and conservation applications. BMC Plant Biol. 2014;14:1586.
    • (2014) BMC Plant Biol , vol.14 , pp. 1586
    • Liu, J.-J.1    Sniezko, R.A.2    Sturrock, R.N.3    Chen, H.4
  • 21
    • 0030746489 scopus 로고    scopus 로고
    • Linkage mapping and genome length in eastern white pine (Pinus strobus L.)
    • Echt CS, Nelson CD. Linkage mapping and genome length in eastern white pine (Pinus strobus L.). Theor Appl Genet. 1997;94:1031-7.
    • (1997) Theor Appl Genet , vol.94 , pp. 1031-1037
    • Echt, C.S.1    Nelson, C.D.2
  • 22
    • 73449106115 scopus 로고    scopus 로고
    • Congruent climate related genecological responses from molecular markers and quantitative traits for western white pine (Pinus monticola)
    • Richardson BA, Rehfeldt GE, Kim M-S. Congruent climate related genecological responses from molecular markers and quantitative traits for western white pine (Pinus monticola). Int J Plant Sci. 2009;170:1120-31.
    • (2009) Int J Plant Sci , vol.170 , pp. 1120-1131
    • Richardson, B.A.1    Rehfeldt, G.E.2    Kim, M.-S.3
  • 23
    • 49749110789 scopus 로고    scopus 로고
    • Development of leucine-rich repeat polymorphism, amplified fragment length polymorphism, and sequence characterized amplified region markers to the Cronartium ribicola resistance gene Cr2 in western white pine (Pinus monticola)
    • Liu J-J, Ekramoddoullah AK. Development of leucine-rich repeat polymorphism, amplified fragment length polymorphism, and sequence characterized amplified region markers to the Cronartium ribicola resistance gene Cr2 in western white pine (Pinus monticola). Tree Genet Genomes. 2008;4:601-10.
    • (2008) Tree Genet Genomes , vol.4 , pp. 601-610
    • Liu, J.-J.1    Ekramoddoullah, A.K.2
  • 24
    • 80051705190 scopus 로고    scopus 로고
    • Association of a novel Pinus monticola chitinase gene (PmCh4B) with quantitative resistance to Cronartium ribicola
    • Liu J-J, Sniezko RA, Ekramoddoullah AK. Association of a novel Pinus monticola chitinase gene (PmCh4B) with quantitative resistance to Cronartium ribicola. Phytopathol. 2011;101:904-11.
    • (2011) Phytopathol. , vol.101 , pp. 904-911
    • Liu, J.-J.1    Sniezko, R.A.2    Ekramoddoullah, A.K.3
  • 25
    • 84928798103 scopus 로고    scopus 로고
    • The genetic architecture of local adaptation I: The genomic landscape of foxtail pine (Pinus balfouriana Grev. & Balf.) as revealed from a high-density linkage map
    • Friedline CJ, Lind BM, Hobson EM, Harwood DE, Mix AD, Maloney PE, Eckert AJ. The genetic architecture of local adaptation I: The genomic landscape of foxtail pine (Pinus balfouriana Grev. & Balf.) as revealed from a high-density linkage map. Tree Genet Genomes. 2015;11:49.
    • (2015) Tree Genet Genomes , vol.11 , pp. 49
    • Friedline, C.J.1    Lind, B.M.2    Hobson, E.M.3    Harwood, D.E.4    Mix, A.D.5    Maloney, P.E.6    Eckert, A.J.7
  • 26
    • 84865339912 scopus 로고    scopus 로고
    • Genome sizes of 172 species, covering 64 out of the 67 genera, range from 8 to 72 picogram
    • Zonneveld BJM. Genome sizes of 172 species, covering 64 out of the 67 genera, range from 8 to 72 picogram. Nordic J Bot. 2012;30:490-502.
    • (2012) Nordic J Bot , vol.30 , pp. 490-502
    • Zonneveld, B.J.M.1
  • 28
    • 84893657208 scopus 로고    scopus 로고
    • Effectors as tools in disease resistance breeding against biotrophic, hemibiotrophic, and necrotrophic plant pathogens
    • Vleeshouwers VG, Oliver RP. Effectors as tools in disease resistance breeding against biotrophic, hemibiotrophic, and necrotrophic plant pathogens. Mol Plant-Microbe Interact. 2014;27:196-206.
    • (2014) Mol Plant-Microbe Interact , vol.27 , pp. 196-206
    • Vleeshouwers, V.G.1    Oliver, R.P.2
  • 31
    • 84890256853 scopus 로고    scopus 로고
    • Transcriptome analysis of Pinus monticola primary needles by RNA-seq provides novel insight into host resistance to Cronartium ribicola
    • Liu J-J, Sturrock RN, Benton R. Transcriptome analysis of Pinus monticola primary needles by RNA-seq provides novel insight into host resistance to Cronartium ribicola. BMC Genomics. 2013;14:884.
    • (2013) BMC Genomics , vol.14 , pp. 884
    • Liu, J.-J.1    Sturrock, R.N.2    Benton, R.3
  • 32
    • 84938982173 scopus 로고    scopus 로고
    • Comparative transcriptomics of a complex of four European pine species
    • Wachowiak W, Trivedi U, Perry A, Cavers S. Comparative transcriptomics of a complex of four European pine species. BMC Genomics. 2015;16:234.
    • (2015) BMC Genomics , vol.16 , pp. 234
    • Wachowiak, W.1    Trivedi, U.2    Perry, A.3    Cavers, S.4
  • 34
    • 68949186256 scopus 로고    scopus 로고
    • Next-generation sequencing technologies and their implications for crop genetics and breeding
    • Varshney RK, Nayak SN, May GD, Jackson SA. Next-generation sequencing technologies and their implications for crop genetics and breeding. Trends Biotechnol. 2009;27:522-30.
    • (2009) Trends Biotechnol , vol.27 , pp. 522-530
    • Varshney, R.K.1    Nayak, S.N.2    May, G.D.3    Jackson, S.A.4
  • 35
    • 84868249180 scopus 로고    scopus 로고
    • Sequencing of the needle transcriptome from Norway spruce (Picea abies Karst L.) reveals lower substitution rates, but similar selective constraints in gymnosperms and angiosperms
    • Chen J, Uebbing S, Gyllenstrand N, Lagercrantz U, Lascoux M, Kallman T. Sequencing of the needle transcriptome from Norway spruce (Picea abies Karst L.) reveals lower substitution rates, but similar selective constraints in gymnosperms and angiosperms. BMC Genomics. 2012;13:589.
    • (2012) BMC Genomics , vol.13 , pp. 589
    • Chen, J.1    Uebbing, S.2    Gyllenstrand, N.3    Lagercrantz, U.4    Lascoux, M.5    Kallman, T.6
  • 41
    • 84902013943 scopus 로고    scopus 로고
    • Paleo-evolutionary plasticity of plant disease resistance genes
    • Zhang R, Murat F, Pont C, Langin T, Salse J. Paleo-evolutionary plasticity of plant disease resistance genes. BMC Genomics. 2014;15:187.
    • (2014) BMC Genomics , vol.15 , pp. 187
    • Zhang, R.1    Murat, F.2    Pont, C.3    Langin, T.4    Salse, J.5
  • 42
    • 33748941620 scopus 로고    scopus 로고
    • Significance of inducible defense-related proteins in infected plants
    • van Loon LC, Rep M, Pieterse CM. Significance of inducible defense-related proteins in infected plants. Annu Rev Phytopathol. 2006;44:135-62.
    • (2006) Annu Rev Phytopathol , vol.44 , pp. 135-162
    • Loon, L.C.1    Rep, M.2    Pieterse, C.M.3
  • 43
    • 66649128241 scopus 로고    scopus 로고
    • GhZFP1, a novel CCCH-type zinc finger protein from cotton, enhances salt stress tolerance and fungal disease resistance in transgenic tobacco by interacting with GZIRD21A and GZIPR5
    • Guo YH, Yu YP, Wang D, Wu CA, Yang GD, Huang JG, Zheng CC. GhZFP1, a novel CCCH-type zinc finger protein from cotton, enhances salt stress tolerance and fungal disease resistance in transgenic tobacco by interacting with GZIRD21A and GZIPR5. New Phytol. 2009;183:62-75.
    • (2009) New Phytol , vol.183 , pp. 62-75
    • Guo, Y.H.1    Yu, Y.P.2    Wang, D.3    Wu, C.A.4    Yang, G.D.5    Huang, J.G.6    Zheng, C.C.7
  • 44
    • 40549134512 scopus 로고    scopus 로고
    • Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice
    • Wang D, Guo Y, Wu C, Yang G, Li Y, Zheng C. Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice. BMC Genomics. 2008;9:44.
    • (2008) BMC Genomics , vol.9 , pp. 44
    • Wang, D.1    Guo, Y.2    Wu, C.3    Yang, G.4    Li, Y.5    Zheng, C.6
  • 45
    • 33748627439 scopus 로고    scopus 로고
    • Expression profiling and mutant analysis reveals complex regulatory networks involved in Arabidopsis response to Botrytis infection
    • AbuQamar S, Chen X, Dhawan R, Bluhm B, Salmeron J, Lam S, Dietrich RA, Mengiste T. Expression profiling and mutant analysis reveals complex regulatory networks involved in Arabidopsis response to Botrytis infection. Plant J. 2006;48:28-44.
    • (2006) Plant J , vol.48 , pp. 28-44
    • AbuQamar, S.1    Chen, X.2    Dhawan, R.3    Bluhm, B.4    Salmeron, J.5    Lam, S.6    Dietrich, R.A.7    Mengiste, T.8
  • 47
    • 84877043826 scopus 로고    scopus 로고
    • Arabidopsis and Brachypodium transgenic plants expressing A. nidulans acetylesterases have decreased degree of polysaccharide acetylation and increased resistance to pathogens
    • Pogorelko G, Lionetti V, Fursova O, Sundaram RM, Qi M, Whitham SA, Bogdanove AJ, Bellincampi D, Zabotina OA. Arabidopsis and Brachypodium transgenic plants expressing A. nidulans acetylesterases have decreased degree of polysaccharide acetylation and increased resistance to pathogens. Plant Physiol. 2013;162:9-23.
    • (2013) Plant Physiol , vol.162 , pp. 9-23
    • Pogorelko, G.1    Lionetti, V.2    Fursova, O.3    Sundaram, R.M.4    Qi, M.5    Whitham, S.A.6    Bogdanove, A.J.7    Bellincampi, D.8    Zabotina, O.A.9
  • 48
    • 84883484627 scopus 로고    scopus 로고
    • Cell wall integrity: Targeted post-synthetic modifications to reveal its role in plant growth and defense against pathogens
    • Pogorelko G, Lionetti V, Bellincampi D, Zabotina O. Cell wall integrity: Targeted post-synthetic modifications to reveal its role in plant growth and defense against pathogens. Plant Signal Behav. 2013;8:e25435.
    • (2013) Plant Signal Behav , vol.8 , pp. e25435
    • Pogorelko, G.1    Lionetti, V.2    Bellincampi, D.3    Zabotina, O.4
  • 49
    • 0030152183 scopus 로고    scopus 로고
    • Characterization of hsr201 and hsr515, two tobacco genes preferentially expressed during the hypersensitive reaction provoked by phytopathogenic bacteria
    • Czernic P, Huang HC, Marco Y. Characterization of hsr201 and hsr515, two tobacco genes preferentially expressed during the hypersensitive reaction provoked by phytopathogenic bacteria. Pant Mol Biol. 1996;31:255-65.
    • (1996) Pant Mol Biol , vol.31 , pp. 255-265
    • Czernic, P.1    Huang, H.C.2    Marco, Y.3
  • 50
    • 0036741859 scopus 로고    scopus 로고
    • Characterization of an acyltransferase capable of synthesizing benzylbenzoate and other volatile esters in flowers and damaged leaves of Clarkia breweri
    • D'Auria JC, Chen F, Pichersky E. Characterization of an acyltransferase capable of synthesizing benzylbenzoate and other volatile esters in flowers and damaged leaves of Clarkia breweri. Plant Physiol. 2002;130:466-76.
    • (2002) Plant Physiol , vol.130 , pp. 466-476
    • D'Auria, J.C.1    Chen, F.2    Pichersky, E.3
  • 52
    • 33750216254 scopus 로고    scopus 로고
    • A novel link between tomato GRAS genes, plant disease resistance and mechanical stress response
    • Mayrose M, Ekengren SK, Melech-Bonfil S, Martin GB, Sessa G. A novel link between tomato GRAS genes, plant disease resistance and mechanical stress response. Mol Plant Pathol. 2006;7:593-604.
    • (2006) Mol Plant Pathol , vol.7 , pp. 593-604
    • Mayrose, M.1    Ekengren, S.K.2    Melech-Bonfil, S.3    Martin, G.B.4    Sessa, G.5
  • 53
    • 84856650192 scopus 로고    scopus 로고
    • The transcriptome of compatible and incompatible interactions of potato (Solanum tuberosum) with Phytophthora infestans revealed by DeepSAGE analysis
    • Gyetvai G, Sønderkær M, Göbel U, Basekow R, Ballvora A, Imhoff M, Kersten B, Nielsen K-L, Gebhardt C. The transcriptome of compatible and incompatible interactions of potato (Solanum tuberosum) with Phytophthora infestans revealed by DeepSAGE analysis. PLoS ONE. 2012;7(2):e31526.
    • (2012) PLoS ONE , vol.7 , Issue.2 , pp. e31526
    • Gyetvai, G.1    Sønderkær, M.2    Göbel, U.3    Basekow, R.4    Ballvora, A.5    Imhoff, M.6    Kersten, B.7    Nielsen, K.-L.8    Gebhardt, C.9
  • 55
    • 84855802587 scopus 로고    scopus 로고
    • Accelerating the domestication of trees using genomic selection: accuracy of prediction models across ages and environments
    • Resende Jr MF, Muñoz P, Acosta JJ, Peter GF, Davis JM, Grattapaglia D, Resende MD, Kirst M. Accelerating the domestication of trees using genomic selection: accuracy of prediction models across ages and environments. New Phytol. 2012;193:617-24.
    • (2012) New Phytol , vol.193 , pp. 617-624
    • Resende, M.F.1    Muñoz, P.2    Acosta, J.J.3    Peter, G.F.4    Davis, J.M.5    Grattapaglia, D.6    Resende, M.D.7    Kirst, M.8
  • 56
    • 84992026844 scopus 로고    scopus 로고
    • Limber pine conservation strategy for the greater Rocky Mountain National Park area
    • Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station.
    • Schoettle AW, Cleaver CM, Burns KS, Connor JJ. Limber pine conservation strategy for the greater Rocky Mountain National Park area. General Technical Report RMRS-GTR-xxx. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 2016; (in press).
    • (2016) General Technical Report RMRS-GTR-xxx
    • Schoettle, A.W.1    Cleaver, C.M.2    Burns, K.S.3    Connor, J.J.4
  • 57
    • 0036008978 scopus 로고    scopus 로고
    • Important roles of drought- and cold-inducible genes for galactinol synthase in stress tolerance in Arabidopsis thaliana
    • Taji T, Ohsumi C, Iuchi S, Seki M, Kasuga M, Kobayashi M, Yamaguchi-Shinozaki K, Shinozaki K. Important roles of drought- and cold-inducible genes for galactinol synthase in stress tolerance in Arabidopsis thaliana. Plant J. 2002;29:417-26.
    • (2002) Plant J , vol.29 , pp. 417-426
    • Taji, T.1    Ohsumi, C.2    Iuchi, S.3    Seki, M.4    Kasuga, M.5    Kobayashi, M.6    Yamaguchi-Shinozaki, K.7    Shinozaki, K.8
  • 58
    • 84923870418 scopus 로고    scopus 로고
    • Selection for resistance to white pine blister rust affects the abiotic stress tolerances of limber pine
    • Vogan PJ, Schoettle AW. Selection for resistance to white pine blister rust affects the abiotic stress tolerances of limber pine. For Ecol Manage. 2015;344:110-9.
    • (2015) For Ecol Manage , vol.344 , pp. 110-119
    • Vogan, P.J.1    Schoettle, A.W.2
  • 59
    • 84940772066 scopus 로고    scopus 로고
    • Transcriptome analysis of the white pine blister rust pathogen Cronartium ribicola: de novo assembly, expression profiling, and identification of candidate effectors
    • Liu J-J, Sturrock RN, Sniezko RA, Williams H, Benton R, Zamany A. Transcriptome analysis of the white pine blister rust pathogen Cronartium ribicola: de novo assembly, expression profiling, and identification of candidate effectors. BMC Genomics. 2015;16:678.
    • (2015) BMC Genomics , vol.16 , pp. 678
    • Liu, J.-J.1    Sturrock, R.N.2    Sniezko, R.A.3    Williams, H.4    Benton, R.5    Zamany, A.6
  • 60
    • 84905049901 scopus 로고    scopus 로고
    • Trimmomatic: A flexible trimmer for Illumina Sequence Data
    • Bolger AM, Lohse M, Usadel B. Trimmomatic: A flexible trimmer for Illumina Sequence Data. Bioinformatics. 2014;30(15):2114-20.
    • (2014) Bioinformatics , vol.30 , Issue.15 , pp. 2114-2120
    • Bolger, A.M.1    Lohse, M.2    Usadel, B.3
  • 62
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics. 2005;21:3674-6.
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1    Gotz, S.2    Garcia-Gomez, J.M.3    Terol, J.4    Talon, M.5    Robles, M.6
  • 63
    • 0004110466 scopus 로고    scopus 로고
    • JoinMap® version 3.0: software for the calculation of genetic linkage maps
    • Wageningen: Plant Research International
    • Van Ooijen JW, Voorrips RE. JoinMap® version 3.0: software for the calculation of genetic linkage maps. Wageningen: Plant Research International; 2001.
    • (2001)
    • Van Ooijen, J.W.1    Voorrips, R.E.2
  • 64
    • 79551671756 scopus 로고    scopus 로고
    • Accurate construction of consensus genetic maps via integer linear programming
    • Wu Y, Close TJ, Lonardi S. Accurate construction of consensus genetic maps via integer linear programming. IEEE/ACM Tran Comput Biol Bioinform. 2011;8:381-94.
    • (2011) IEEE/ACM Tran Comput Biol Bioinform , vol.8 , pp. 381-394
    • Wu, Y.1    Close, T.J.2    Lonardi, S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.