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Volumn 5, Issue 2, 2014, Pages 347-362

Mapping fusiform rust resistance genes within a complex mating design of loblolly pine

Author keywords

Bayesc ; Bayesian association with missing data (BAMD); Gene for gene interaction; Logarithm of the odds (LOD); Major gene resistance; Pinus taeda; Single nucleotide polymorphism (SNP)

Indexed keywords

GENE RESISTANCE; GENE-FOR-GENE INTERACTION; LOGARITHM OF THE ODDS (LOD); MISSING DATA; PINUS TAEDA; SINGLE-NUCLEOTIDE POLYMORPHISMS;

EID: 84896890458     PISSN: None     EISSN: 19994907     Source Type: Journal    
DOI: 10.3390/f5020347     Document Type: Article
Times cited : (19)

References (42)
  • 2
    • 0348190020 scopus 로고    scopus 로고
    • An economic analysis of fusiform rust protection research
    • Cubbage, F.; Pye, J.; Holmes, T.; Wagner, J. An economic analysis of fusiform rust protection research. South. J. App. For. 2000, 24, 77-85.
    • (2000) South. J. App. For. , vol.24 , pp. 77-85
    • Cubbage, F.1    Pye, J.2    Holmes, T.3    Wagner, J.4
  • 4
    • 78751613313 scopus 로고    scopus 로고
    • A genomic map enriched for markers linked to Avr1 Cronartium. quercuum f.sp. fusiforme
    • Kubisiak, T.; Anderson, C.; Amerson, H.; Smith, J.; Davis, J.; Nelson, C. A genomic map enriched for markers linked to Avr1 Cronartium. quercuum f.sp. fusiforme. Fungal Gen. Biol. 2011, 48, 266-274.
    • (2011) Fungal Gen. Biol. , vol.48 , pp. 266-274
    • Kubisiak, T.1    Anderson, C.2    Amerson, H.3    Smith, J.4    Davis, J.5    Nelson, C.6
  • 5
    • 15544386412 scopus 로고    scopus 로고
    • Genetic interaction of the fusiform rust fungus with resistance gene fr1 in loblolly pine
    • Kubisiak, T.L.; Amerson, H.V.; Nelson, C.D. Genetic interaction of the fusiform rust fungus with resistance gene fr1 in loblolly pine. Phytopathology 2005, 95, 376-380.
    • (2005) Phytopathology , vol.95 , pp. 376-380
    • Kubisiak, T.L.1    Amerson, H.V.2    Nelson, C.D.3
  • 7
    • 77649160817 scopus 로고    scopus 로고
    • Unravelling and managing fusiform rust disease: A model approach for coevolved forest tree pathosystems
    • Nelson, C.; Kubisiak, T.; Amerson, H. Unravelling and managing fusiform rust disease: A model approach for coevolved forest tree pathosystems. For. Pathol. 2010, 40, 64-72.
    • (2010) For. Pathol. , vol.40 , pp. 64-72
    • Nelson, C.1    Kubisiak, T.2    Amerson, H.3
  • 8
    • 84896869469 scopus 로고    scopus 로고
    • North Carolina State University, Raleigh, NC, USA
    • unpublished
    • Amerson, H. North Carolina State University, Raleigh, NC, USA. Forests 2014, unpublished.
    • (2014) Forests
    • Amerson, H.1
  • 9
    • 77953177926 scopus 로고    scopus 로고
    • Clonal evaluation for fusiform rust disease resistance: Effects of pathogen virulence and disease escape
    • Kayihan, G.; Nelson, C.; Huber, D.; Amerson, H.; White, T.; Davis, J. Clonal evaluation for fusiform rust disease resistance: Effects of pathogen virulence and disease escape. Can. J. For. Res. Rev. 2010, 40, 1042-1050.
    • (2010) Can. J. For. Res. Rev. , vol.40 , pp. 1042-1050
    • Kayihan, G.1    Nelson, C.2    Huber, D.3    Amerson, H.4    White, T.5    Davis, J.6
  • 10
    • 79956114540 scopus 로고    scopus 로고
    • Performance of the loblolly pine fusiform rust disease resistance gene (Fr1) in a slashXloblolly pine hybrid family
    • Huber, D.; Amerson, H., Performance of the loblolly pine fusiform rust disease resistance gene (Fr1) in a slashXloblolly pine hybrid family. Tree Genet. Genomes 2011, 7, 535-540.
    • (2011) Tree Genet. Genomes , vol.7 , pp. 535-540
    • Huber, D.1    Amerson, H.2
  • 11
    • 0029394903 scopus 로고
    • Identification of amplified restriction fragment polymorphism (AFLP) markers tightly linked to the tomato Cf-9 gene for resistance to Cladosporium. fulvum
    • Thomas, C.M.; Vos, P.; Zabeau, M.; Jones, D.A.; Norcott, K.A.; Chadwick, B.P.; Jones, J.D. Identification of amplified restriction fragment polymorphism (AFLP) markers tightly linked to the tomato Cf-9 gene for resistance to Cladosporium. fulvum. Plant J. 1995, 8, 785-794.
    • (1995) Plant J , vol.8 , pp. 785-794
    • Thomas, C.M.1    Vos, P.2    Zabeau, M.3    Jones, D.A.4    Norcott, K.A.5    Chadwick, B.P.6    Jones, J.D.7
  • 12
    • 33745015480 scopus 로고    scopus 로고
    • Direct protein interaction underlies gene-for-gene specificity and coevolution of the flax resistance genes and flax rust avirulence genes
    • Dodds, P.N.; Lawrence, G.J.; Catanzariti, A.M.; Teh, T.; Wang, C.I.; Ayliffe, M.A.; Kobe, B.; Ellis, J.G. Direct protein interaction underlies gene-for-gene specificity and coevolution of the flax resistance genes and flax rust avirulence genes. Proc. Natl. Acad. Sci. USA 2006, 103, 8888-8893.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 8888-8893
    • Dodds, P.N.1    Lawrence, G.J.2    Catanzariti, A.M.3    Teh, T.4    Wang, C.I.5    Ayliffe, M.A.6    Kobe, B.7    Ellis, J.G.8
  • 15
    • 57349107224 scopus 로고    scopus 로고
    • High-throughput genotyping and mapping of single nucleotide polymorphisms in loblolly pine (Pinus taeda L
    • Eckert, A.; Pande, B.; Ersoz, E.; Wright, M.; Rashbrook, V.; Nicolet, C.; Neale, D. High-throughput genotyping and mapping of single nucleotide polymorphisms in loblolly pine (Pinus taeda L.). Tree Genet. Genomes 2009, 5, 225-234.
    • (2009) Tree Genet. Genomes , vol.5 , pp. 225-234
    • Eckert, A.1    Pande, B.2    Ersoz, E.3    Wright, M.4    Rashbrook, V.5    Nicolet, C.6    Neale, D.7
  • 16
    • 17444388556 scopus 로고    scopus 로고
    • Genetic dissection of fusiform rust and pitch canker disease traits in loblolly pine
    • Kayihan, G.; Huber, D.; Morse, A.; White, T.; Davis, J. Genetic dissection of fusiform rust and pitch canker disease traits in loblolly pine. Theor. App. Genet. 2005, 110, 948-958.
    • (2005) Theor. App. Genet. , vol.110 , pp. 948-958
    • Kayihan, G.1    Huber, D.2    Morse, A.3    White, T.4    Davis, J.5
  • 17
    • 79956199958 scopus 로고    scopus 로고
    • Extension of the bayesian alphabet for genomic selection
    • Habier, D.; Fernando, R.; Kizilkaya, K.; Garrick, D. Extension of the bayesian alphabet for genomic selection. BMC Bioinform. 2011, 12, 186.
    • (2011) BMC Bioinform , vol.12 , pp. 186
    • Habier, D.1    Fernando, R.2    Kizilkaya, K.3    Garrick, D.4
  • 19
    • 84866265047 scopus 로고    scopus 로고
    • Simultaneous SNP identification in association studies with missing data
    • Li, Z.; Gopal, V.; Li, X.; Davis, J.M.; Casella, G. Simultaneous SNP identification in association studies with missing data. Ann. App. Statist. 2012, 6, 432-456.
    • (2012) Ann. App. Statist. , vol.6 , pp. 432-456
    • Li, Z.1    Gopal, V.2    Li, X.3    Davis, J.M.4    Casella, G.5
  • 21
    • 84898442293 scopus 로고    scopus 로고
    • Genomic relationship matrix for correcting pedigree errors in breeding populations: Impact on genetic parameters and genomic selection accuracy
    • doi:10.2135/cropsci2012.12.0673
    • Munoz, P.R.; Resende, M.F.R.; Huber, D.A.; Quesada, T.; Resende, M.D.V.; Neale, D.V.; Wegrzyn, J.L.; Kirst, M.; Peter, G.F. Genomic relationship matrix for correcting pedigree errors in breeding populations: Impact on genetic parameters and genomic selection accuracy. Crop Sci. 2013, doi:10.2135/cropsci2012.12.0673.
    • (2013) Crop Sci
    • Munoz, P.R.1    Resende, M.F.R.2    Huber, D.A.3    Quesada, T.4    Resende, M.D.V.5    Neale, D.V.6    Wegrzyn, J.L.7    Kirst, M.8    Peter, G.F.9
  • 22
    • 77956090475 scopus 로고    scopus 로고
    • Patterns of population structure and environmental associations to aridity across the range of loblolly pine (Pinus taeda L., pinaceae)
    • Eckert, A.; Van Heerwaarden, J.; Wegrzyn, J.; Nelson, C.; Ross-Ibarra, J.; Gonzalez-Martinez, S.; Neale, D. Patterns of population structure and environmental associations to aridity across the range of loblolly pine (Pinus taeda L., pinaceae). Genetics 2010, 185, 969-982.
    • (2010) Genetics , vol.185 , pp. 969-982
    • Eckert, A.1    Van Heerwaarden, J.2    Wegrzyn, J.3    Nelson, C.4    Ross-Ibarra, J.5    Gonzalez-Martinez, S.6    Neale, D.7
  • 23
    • 77949854404 scopus 로고    scopus 로고
    • Deregressing estimated breeding values and weighting information for genomic regression analyses
    • Garrick, D.; Taylor, J.; Fernando, R. Deregressing estimated breeding values and weighting information for genomic regression analyses. Genet. Sel. Evol. 2009, 41.
    • (2009) Genet. Sel. Evol. , pp. 41
    • Garrick, D.1    Taylor, J.2    Fernando, R.3
  • 24
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • Falush, D.; Stephens, M.; Pritchard, J.K. Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies. Genetics 2003, 164, 1567-1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 25
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard, J.K.; Stephens, M.; Donnelly, P. Inference of population structure using multilocus genotype data. Genetics 2000, 155, 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 26
    • 84928230633 scopus 로고    scopus 로고
    • SAS Institute Inc
    • SAS Institute, Inc: Cary, NC, USA
    • SAS Institute Inc. SAS/STAT® 9.3. User's Guide; SAS Institute, Inc: Cary, NC, USA, 2011.
    • (2011) SAS/STAT® 9.3. User's Guide
  • 28
    • 0000419737 scopus 로고    scopus 로고
    • Tree improvement and sustainable forestry-Impact of two cycles of loblolly pine breeding in the USA
    • Li, B.; McKeand, S.; Weir, R. Tree improvement and sustainable forestry-Impact of two cycles of loblolly pine breeding in the USA. For. Genet. 1999, 6, 229-234.
    • (1999) For. Genet. , vol.6 , pp. 229-234
    • Li, B.1    McKeand, S.2    Weir, R.3
  • 29
    • 0032439967 scopus 로고    scopus 로고
    • A strategy for the third breeding cycle of loblolly pine in the southeastern US
    • McKeand, S.; Bridgwater, F. A strategy for the third breeding cycle of loblolly pine in the southeastern US. Silvae Genet. 1998, 47, 223-234.
    • (1998) Silvae Genet , vol.47 , pp. 223-234
    • McKeand, S.1    Bridgwater, F.2
  • 30
    • 48249122414 scopus 로고    scopus 로고
    • Genomic and physiological approaches to advancing forest tree improvement
    • Nelson, C.D.; Johnsen, K.H. Genomic and physiological approaches to advancing forest tree improvement. Tree Physiol. 2008, 28, 1135-1143.
    • (2008) Tree Physiol , vol.28 , pp. 1135-1143
    • Nelson, C.D.1    Johnsen, K.H.2
  • 32
    • 84862642813 scopus 로고    scopus 로고
    • Genetic improvement of sawtimber potential in loblolly pine
    • Cumbie, W.; Isik, F.; McKeand, S. Genetic improvement of sawtimber potential in loblolly pine. For. Sci. 2012, 58, 168-177.
    • (2012) For. Sci. , vol.58 , pp. 168-177
    • Cumbie, W.1    Isik, F.2    McKeand, S.3
  • 33
    • 33646087411 scopus 로고    scopus 로고
    • Performance of improved genotypes of loblolly pine across different soils, climates, and silvicultural inputs
    • McKeand, S.E.; Jokela, E.J.; Huber, D.A.; Byram, T.D.; Allen, H.L.; Li, B.; Mullin, T.J. Performance of improved genotypes of loblolly pine across different soils, climates, and silvicultural inputs. For. Ecol. Manag. 2006, 227, 178-184.
    • (2006) For. Ecol. Manag. , vol.227 , pp. 178-184
    • McKeand, S.E.1    Jokela, E.J.2    Huber, D.A.3    Byram, T.D.4    Allen, H.L.5    Li, B.6    Mullin, T.J.7
  • 34
    • 0009624119 scopus 로고
    • Application of genetic-disease resistance for the control of fusiform rust in intensively managed southern pine
    • Schmidt, R.; Powers, H.; Snow, G. Application of genetic-disease resistance for the control of fusiform rust in intensively managed southern pine. Phytopathology 1981, 71, 993-997.
    • (1981) Phytopathology , vol.71 , pp. 993-997
    • Schmidt, R.1    Powers, H.2    Snow, G.3
  • 35
    • 0033836224 scopus 로고    scopus 로고
    • Components of partial resistance in the slash pine-fusiform rust pathosystem
    • Schmidt, R.; Gramacho, K.; Miller, T.; Young, C. Components of partial resistance in the slash pine-fusiform rust pathosystem. Phytopathology 2000, 90, 1005-1010.
    • (2000) Phytopathology , vol.90 , pp. 1005-1010
    • Schmidt, R.1    Gramacho, K.2    Miller, T.3    Young, C.4
  • 37
    • 84861199635 scopus 로고    scopus 로고
    • Genetic and genomic approaches for r-gene mediated disease resistance in tomato: Retrospects and prospects
    • Ercolano, M.R.; Sanseverino, W.; Carli, P.; Ferriello, F.; Frusciante, L. Genetic and genomic approaches for r-gene mediated disease resistance in tomato: Retrospects and prospects. Plant Cell Rep. 2012, 31, 973-985.
    • (2012) Plant Cell Rep , vol.31 , pp. 973-985
    • Ercolano, M.R.1    Sanseverino, W.2    Carli, P.3    Ferriello, F.4    Frusciante, L.5
  • 39
    • 84869508438 scopus 로고    scopus 로고
    • Identification and fine mapping of a major r gene to Magnaporthe oryzae in a broad-spectrum resistant germplasm in rice
    • Xiao, W.; Yang, Q.; Wang, H.; Duan, J.; Guo, T.; Liu, Y.; Zhu, X.; Chen, Z. Identification and fine mapping of a major r gene to Magnaporthe oryzae in a broad-spectrum resistant germplasm in rice. Mol. Breed. 2012, 30, 1715-1726.
    • (2012) Mol. Breed. , vol.30 , pp. 1715-1726
    • Xiao, W.1    Yang, Q.2    Wang, H.3    Duan, J.4    Guo, T.5    Liu, Y.6    Zhu, X.7    Chen, Z.8
  • 40
    • 70350276544 scopus 로고    scopus 로고
    • Molecular markers for the identification of resistance genes and marker-assisted selection in breeding wheat for leaf rust resistance
    • Vida, G.; Gal, M.; Uhrin, A.; Veisz, O.; Syed, N.; Flavell, A.; Wang, Z.; Bedo, Z. Molecular markers for the identification of resistance genes and marker-assisted selection in breeding wheat for leaf rust resistance. Euphytica 2009, 170, 67-76.
    • (2009) Euphytica , vol.170 , pp. 67-76
    • Vida, G.1    Gal, M.2    Uhrin, A.3    Veisz, O.4    Syed, N.5    Flavell, A.6    Wang, Z.7    Bedo, Z.8
  • 41
    • 80052482640 scopus 로고    scopus 로고
    • Functional markers based molecular characterization and cloning of resistance gene analogs encoding NBS-LRR disease resistance proteins in finger millet (Eleusine coracana)
    • Panwar, P.; Jha, A.; Pandey, P.; Gupta, A.; Kumar, A. Functional markers based molecular characterization and cloning of resistance gene analogs encoding NBS-LRR disease resistance proteins in finger millet (Eleusine coracana). Mol. Biol. Rep. 2011, 38, 3427-3436.
    • (2011) Mol. Biol. Rep. , vol.38 , pp. 3427-3436
    • Panwar, P.1    Jha, A.2    Pandey, P.3    Gupta, A.4    Kumar, A.5


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