Identification and characterization of random amplified polymorphic DNA markers linked to a major gene (Cr2) for resistance to Cronartium ribicola in Pinus monticola

Phytopathology

Volumn 96, Issue 4, 2006, Pages 395-399

  Liu, Jun Jun ^a   Ekramoddoullah, Abul K M ^a   Hunt, Rich S ^a   Zamani, Arezoo ^a  

^a PACIFIC FORESTRY CENTRE   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

CRONARTIUM RIBICOLA; FUNGI; PINUS MONTICOLA; UREDINALES;

EID: 33646014449     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO-96-0395     Document Type: Article

References (35)

1. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J. 1997. Gapped BLAST and PSI-BLAST. A new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
2. Arumuganathan, K., and Earle, E. D. 1991. Nuclear DNA content of some important plant species. Plant Mol. Bio. Rep. 9:208-218.
3. Benet, H., Guries, R. P., Boury, S., and Smalley, E. B. 1995. Identification of RAPD markers linked to a black leaf spot resistance gene in Chinese elm. Theor. Appl. Genet. 90:1068-1073.
4. Davis, J., and Mehlenbacher, S. A. 1997. Identification of RAPD markers linked to eastern filbert blight resistance in hazelnut. Acta Hortic. 445:553-556.
5. Devey, M. E., Mix, A. D., Kinloch, B. B., Jr., and Neale, D. B. 1995. Random amplified polymorphic DNA markers tightly linked to a gene for resistance to white pine blister rust in sugar pine. Proc. Natl. Acad. Sci. USA 92:2066-2070.
6. Dodds, P. N., Lawrence, G. J., Catanzariti, A. M., Ayliffe, M. A., and Ellis, J. G. 2004. The Melampsora lini AvrL567 avirulence genes are expressed in haustoria and their products are recognized inside plant cells. Plant Cell. 16:755-768.
7. Echt, C. S., and Nelson, C. D. 1997. Linkage mapping and genome length in eastern white pine (Pinus strobus L.). Theor. Appl. Genet. 94:1031-1039.
8. Ekramoddoullah, A. K. M., and Hunt, R. S. 2002. Challenges and opportunity in studies of host-pathogen interaction in forest tree species. Can. J. Plant Pathol. 24:408-415.
9. Fazekas, A. J., and Yeh, F. C. 2001. Random amplified polymorphic DNA diversity of marginal and central population in Pinus contorta subsp. latifolia. Genomics 44:13-22.
10. Flavell, A. J., Dunbar, E., Anderson, R., Pearce, S. R., Hartley, R., and Kumar, A. 1992. Ty1-copia group retrotransposons are ubiquitous and heterogeneous in higher plants. Nucleic Acids Res. 20:3639-3644.
11. Friesen, N., Brandes, A., and Heslop-Harrison, J. S. 2001. Diversity, origin, and distribution of retrotransposons (gypsy and copia) in conifers. Mol. Biol. Evol. 18:1176-1188.
12. Harkins, D. M., Johnson, G. N., Skaggs, P. A., Mix, A. D., Dupper, G. E., Devey, M. E., Kinloch, B. B., Jr., and Neale, D. B. 1998. Saturation mapping of a major gene for resistance to white pine blister rust in sugar pine. Theor. Appl. Genet. 97:1355-1360.
13. Hunt, R. S. 1997. Relative value of slow canker growth and bark reaction as resistance responses to white pine blister rust. Can. J. Plant Pathol. 19:352-357.
14. Hunt, R. S., Jensen, G. D., and Ekramoddoullah, A. K. M. 2004. Confirmation of dominant gene resistance (CV2) in US white pine selection to white pine blister rust growing in British Columbia. Pages 227-229 in: Breeding and Genetic Resources of Five-Needle Pines: Growth, Adaptability, and Pest Resistance. R. A. Sniezko, S. Samman, S. E. Schlarbaum, and H. B. Knebel, eds. IUFRO Working Party.
15. James, C. M., Clarke, J. B., and Evans, K. M. 2004. Identification of molecular markers linked to the mildew resistance gene Pl-d in apple. Theor. Appl. Genet. 110:175-181.
16. Junghans, D. T., Alfenas, A. C., Brommonschenkel, S. H., Oda, S., Mello, E. J., and Grattapaglia, D. 2003. Resistance to rust (Puccinia psidii Winter) in Eucalyptus: Mode of inheritance and mapping of a major gene with RAPD markers. Theor. Appl. Genet. 108:175-180.
17. Kinloch, B. B., Jr., and Dupper, G. E. 2002. Genetic specificity in the white pine-blister rust pathosystem. Phytopathology 92:278-280.
18. Kinloch, B. B., Jr., and Littlefield, J. L. 1977. White pine blister rust: Hypersensitive resistance in sugar pine. Can. J. Bot. 55:1148-1155.
19. Kinloch, B. B., Jr., Parks, G. K., and Fowler, C. W. 1970. White pine blister rust: Simple inherited resistance in sugar pine. Science 167:193-195.
20. Kinloch, B. B., Jr., Sniezko, R. A., Barnes, G. D., and Greathouse, T. E. 1999. A major gene for resistance to white pine blister rust in western white pine from the western Cascade Range. Phytopathology 89:861-867.
21. Kondo, T., Terada, K., Hayashi, E., Kuramoto, N., Okamura, M., and Kawasaki, H. 2000. RAPD markers linked to a gene for resistance to pine needle gall midge in Japanese black pine (Pinus thunbergii). Theor. Appl. Genet. 100:391-395.
22. Lander, E. S., Green, P., Abrahamson, J., Barlow, A., Daly, M. J., Lincoln, S. E., and Newburg, L. 1987. MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174-181.
23. Liu, J.-J., and Ekramoddoullah, A. K. M. 2003. Isolation, genetic variation and expression of TIR-NBS-LRR resistance gene analogs from western white pine (Pinus monticola Dougl. ex. D. Don.). Mol. Genet. Genom. 270:432-441.
24. Liu, J.-J., Ekramoddoullah, A. K. M., and Zamani, A. 2005. A class IV chitinase is up-regulated upon fungal infection and abiotic stresses and associated with slow-canker-growth resistance to Cronartium ribicola in western white pine (Pinus monticola). Phytopathology 95:284-291.
25. Liu, J.-J., Hunt, R., and Ekramoddoullah, A. K. M. 2004. Recent insights into genetic resistance of western white pine to white blister rust. Rec. Res. Develop. Biotechnol. Bioeng. 6:65-76.
26. Mehlenbacher, S. A., Brown, R. N., Davis, J. W., Chen, H., Bassil, N. V., Smith, D. C., and Kubisiak, T. L. 2004. RAPD markers linked to eastern filbert blight resistance in Corylus avellana. Theor. Appl. Genet. 108:651-656.
27. Michelmore, R. W. 2003. The impact zone: Genomics and breeding for durable disease resistance. Curr. Opin. Plant Biol. 6:397-404.
28. Michelmore, R. W., Paran, I., and Kesseli, R. V. 1991. Identification of markers linked to disease resistance genes by bulked segregant analysis: A rapid method to detect markers in specific genomic regions by using segregating population. Proc. Natl. Acad. Sci. USA 88:9828-9832.
29. Neumann, P., Pozarkova, D., and Macas, J. 2003. Highly abundant pea LTR retrotransposon Ogre is constitutively transcribed and partially spliced. Plant Mol. Biol. 53:399-410.
30. Pearce, S. R., Stuart-Rogers, C., Knox, M. R., Kumar, A., Ellis, T. H., and Flavell, A. J. 1999. Rapid isolation of plant Ty1-copia group retrotransposon LTR sequences for molecular marker studies. Plant J. 19:711-717.
31. Suoniemi, A., Tanskanen, J., and Schulman, A. H. 1998. Gypsy-like retrotransposons are widespread in the plant kingdom. Plant J. 13:699-705.
32. Tabor, G. M., Kubisiak, T. L., Klopfenstein, N. B., and Mcabb, H. S., Jr. 2000. Bulked segregant analysis identifies molecular markers linked to Melampsora medusae resistance in Populus deltoides. Phytopathology 90:1039-1042.
33. Voytas, D. F., Cummings, M. P., Koniczny, A., Ausubel, F. M., and Rodermel, S. R. 1992. Copia-like retrotransposons are ubiquitous among plants. Proc. Natl. Acad. Sci. USA 89:7124-7128.
34. Wakamiya, I., Newton, R. J., Johnston, J. S., and Price, H. J. 1993. Genome size and environmental factors in the genus Pinus. Am. J. Bot. 80:1235-1241.
35. Wilcox, P. L., Amerson, H. V., Kuhlman, E. G., Liu, B.-H., O'Malley, D. M., and Sederoff, R. R. 1996. Detection of a major gene for resistance to fusiform rust disease in loblolly pine by genomic mapping. Proc. Natl. Acad. Sci. USA 93:3859-3864.