-
1
-
-
84907867765
-
Emergence of Zaire Ebola virus disease in Guinea
-
Baize, S. et al. Emergence of Zaire Ebola virus disease in Guinea. N. Engl. J. Med. 371, 1418-1425 (2014).
-
(2014)
N. Engl. J. Med.
, vol.371
, pp. 1418-1425
-
-
Baize, S.1
-
2
-
-
84907193791
-
Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak
-
Gire, S. K. et al. Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak. Science 345, 1369-1372 (2014).
-
(2014)
Science
, vol.345
, pp. 1369-1372
-
-
Gire, S.K.1
-
3
-
-
84934981152
-
Ebola virus epidemiology, transmission, evolution during seven months in Sierra Leone
-
Park, D. J. et al. Ebola virus epidemiology, transmission, evolution during seven months in Sierra Leone. Cell 161, 1516-1526 (2015).
-
(2015)
Cell
, vol.161
, pp. 1516-1526
-
-
Park, D.J.1
-
4
-
-
84939220307
-
Clinical sequencing uncovers origins and evolution of Lassa virus
-
Andersen, K. G. et al. Clinical sequencing uncovers origins and evolution of Lassa virus. Cell 162, 738-750 (2015).
-
(2015)
Cell
, vol.162
, pp. 738-750
-
-
Andersen, K.G.1
-
5
-
-
84912575573
-
Nomenclature-and database-compatible names for the two Ebola virus variants that emerged in Guinea and the Democratic Republic of the Congo in 2014
-
Kuhn, J. H. et al. Nomenclature-and database-compatible names for the two Ebola virus variants that emerged in Guinea and the Democratic Republic of the Congo in 2014. Viruses 6, 4760-4799 (2014).
-
(2014)
Viruses
, vol.6
, pp. 4760-4799
-
-
Kuhn, J.H.1
-
7
-
-
84991633247
-
-
Ebola Situation Report
-
Ebola Situation Report, W. H. O. Ebola virus disease outbreak http://apps.who. int/ebola/current-situation/ebola-situation-report-30-march-2016 (2016).
-
(2016)
W. H. O. Ebola Virus Disease Outbreak
-
-
-
8
-
-
0027910025
-
Genetic identification of a hantavirus associated with an outbreak of acute respiratory illness
-
Nichol, S. T. et al. Genetic identification of a hantavirus associated with an outbreak of acute respiratory illness. Science 262, 914-917 (1993).
-
(1993)
Science
, vol.262
, pp. 914-917
-
-
Nichol, S.T.1
-
9
-
-
0028819120
-
The molecular epidemiology of human immunodeficiency virus type 1 in Edinburgh
-
Holmes, E. C. et al. The molecular epidemiology of human immunodeficiency virus type 1 in Edinburgh. J. Infect. Dis. 171, 45-53 (1995).
-
(1995)
J. Infect. Dis.
, vol.171
, pp. 45-53
-
-
Holmes, E.C.1
-
10
-
-
0037775607
-
Coronavirus genomic-sequence variations and the epidemiology of the severe acute respiratory syndrome
-
Tsui, S. K., Chim, S. S. & Lo, Y. M. Coronavirus genomic-sequence variations and the epidemiology of the severe acute respiratory syndrome. N. Engl. J. Med. 349, 187-188 (2003).
-
(2003)
N. Engl. J. Med.
, vol.349
, pp. 187-188
-
-
Tsui, S.K.1
Chim, S.S.2
Lo, Y.M.3
-
11
-
-
27144474904
-
Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution
-
Ghedin, E. et al. Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution. Nature 437, 1162-1166 (2005).
-
(2005)
Nature
, vol.437
, pp. 1162-1166
-
-
Ghedin, E.1
-
12
-
-
67650407532
-
Antigenic and genetic characteristics of swine-origin 2009 A(H1N1) influenza viruses circulating in humans
-
Garten, R. J. et al. Antigenic and genetic characteristics of swine-origin 2009 A(H1N1) influenza viruses circulating in humans. Science 325, 197-201 (2009).
-
(2009)
Science
, vol.325
, pp. 197-201
-
-
Garten, R.J.1
-
13
-
-
84882860961
-
Viral pathogen discovery
-
Chiu, C. Y. Viral pathogen discovery. Curr. Opin. Microbiol. 16, 468-478 (2013).
-
(2013)
Curr. Opin. Microbiol.
, vol.16
, pp. 468-478
-
-
Chiu, C.Y.1
-
14
-
-
53649106195
-
Next-generation DNA sequencing
-
Shendure, J. & Ji, H. Next-generation DNA sequencing. Nat. Biotechnol. 26, 1135-1145 (2008).
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1135-1145
-
-
Shendure, J.1
Ji, H.2
-
15
-
-
72849144434
-
Sequencing technologies-the next generation
-
Metzker, M. L. Sequencing technologies-the next generation. Nat. Rev. Genet. 11, 31-46 (2010).
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
16
-
-
84879627975
-
Next-generation sequencing platforms
-
Mardis, E. R. Next-generation sequencing platforms. Annu. Rev. Anal. Chem. 6, 287-303 (2013).
-
(2013)
Annu. Rev. Anal. Chem.
, vol.6
, pp. 287-303
-
-
Mardis, E.R.1
-
17
-
-
84928773215
-
Virology Mutation rate and genotype variation of Ebola virus from Mali case sequences
-
Hoenen, T. et al. Virology. Mutation rate and genotype variation of Ebola virus from Mali case sequences. Science 348, 117-119 (2015).
-
(2015)
Science
, vol.348
, pp. 117-119
-
-
Hoenen, T.1
-
18
-
-
84930410118
-
Genome sequence analysis of Ebola virus in clinical samples from three British healthcare workers August 2014 to March 2015
-
Bell, A. et al. Genome sequence analysis of Ebola virus in clinical samples from three British healthcare workers, August 2014 to March 2015. Euro Surveill. 20, 21131 (2015).
-
(2015)
Euro Surveill.
, vol.20
, pp. 21131
-
-
Bell, A.1
-
19
-
-
84931405690
-
Monitoring of Ebola virus Makona evolution through establishment of advanced genomic capability in Liberia
-
Kugelman, J. R. et al. Monitoring of Ebola virus Makona evolution through establishment of advanced genomic capability in Liberia. Emerg. Infect. Dis. 21, 1135-1143 (2015).
-
(2015)
Emerg. Infect. Dis.
, vol.21
, pp. 1135-1143
-
-
Kugelman, J.R.1
-
20
-
-
84937234768
-
Distinct lineages of Ebola virus in Guinea during the 2014 West African epidemic
-
Simon-Loriere, E. et al. Distinct lineages of Ebola virus in Guinea during the 2014 West African epidemic. Nature 524, 102-104 (2015).
-
(2015)
Nature
, vol.524
, pp. 102-104
-
-
Simon-Loriere, E.1
-
21
-
-
84937234767
-
Temporal and spatial analysis of the 2014-2015 Ebola virus outbreak in West Africa
-
Carroll, M. W. et al. Temporal and spatial analysis of the 2014-2015 Ebola virus outbreak in West Africa. Nature 524, 97-101 (2015).
-
(2015)
Nature
, vol.524
, pp. 97-101
-
-
Carroll, M.W.1
-
22
-
-
84930394639
-
Genetic diversity and evolutionary dynamics of Ebola virus in Sierra Leone
-
Tong, Y. G. et al. Genetic diversity and evolutionary dynamics of Ebola virus in Sierra Leone. Nature 524, 93-96 (2015).
-
(2015)
Nature
, vol.524
, pp. 93-96
-
-
Tong, Y.G.1
-
23
-
-
84944145451
-
Genotypic anomaly in Ebola virus strains circulating in Magazine Wharf area, Freetown, Sierra Leone 2015
-
Smits, S. L. et al. Genotypic anomaly in Ebola virus strains circulating in Magazine Wharf area, Freetown, Sierra Leone, 2015. Euro Surveill. 20, 30035 (2015).
-
(2015)
Euro Surveill
, vol.20
, pp. 30035
-
-
Smits, S.L.1
-
24
-
-
84951139771
-
Evolution and spread of Ebola virus in Liberia, 2014-2015
-
Ladner, J. T. et al. Evolution and spread of Ebola virus in Liberia, 2014-2015. Cell Host Microbe 18, 659-669 (2015).
-
(2015)
Cell Host Microbe
, vol.18
, pp. 659-669
-
-
Ladner, J.T.1
-
25
-
-
84958068536
-
Real-time, portable genome sequencing for Ebola surveillance
-
Quick, J. et al. Real-time, portable genome sequencing for Ebola surveillance. Nature 530, 228-232 (2016).
-
(2016)
Nature
, vol.530
, pp. 228-232
-
-
Quick, J.1
-
26
-
-
85084326675
-
Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases
-
Arias, A. et al. Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases. Virus Evol. 2, vew016(2016).
-
(2016)
Virus Evol.
, vol.2
, pp. 016
-
-
Arias, A.1
-
27
-
-
84965188271
-
Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples
-
Matranga, C. B. et al. Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples. Genome Biol. 15, 519 (2014).
-
(2014)
Genome Biol.
, vol.15
, pp. 519
-
-
Matranga, C.B.1
-
28
-
-
84942880540
-
Lessons from Ebola: Improving infectious disease surveillance to inform outbreak management
-
Woolhouse, M. E., Rambaut, A. & Kellam, P. Lessons from Ebola: improving infectious disease surveillance to inform outbreak management. Sci. Transl. Med. 7, 307-5 (2015).
-
(2015)
Sci. Transl. Med.
, vol.7
, pp. 307-315
-
-
Woolhouse, M.E.1
Rambaut, A.2
Kellam, P.3
-
29
-
-
84947577724
-
Nextflu: Real-time tracking of seasonal influenza virus evolution in humans
-
Neher, R. A. & Bedford, T. Nextflu: real-time tracking of seasonal influenza virus evolution in humans. Bioinformatics 31, 3546-3548 (2015).
-
(2015)
Bioinformatics
, vol.31
, pp. 3546-3548
-
-
Neher, R.A.1
Bedford, T.2
-
30
-
-
84991708223
-
NextStrain-real-time analysis of Ebola virus evolution
-
Bedford, T. & Neher, R. A. NextStrain-real-time analysis of Ebola virus evolution. NextStrain http://ebola.nextstrain.org/(2015).
-
(2015)
NextStrain
-
-
Bedford, T.1
Neher, R.A.2
-
31
-
-
0027482034
-
Phylogenetic relationships of dengue-2 viruses
-
Lewis, J. A. et al. Phylogenetic relationships of dengue-2 viruses. Virology 197, 216-224 (1993).
-
(1993)
Virology
, vol.197
, pp. 216-224
-
-
Lewis, J.A.1
-
32
-
-
0033831605
-
Genetic epidemiology of hepatitis C virus throughout Egypt
-
Ray, S. C., Arthur, R. R., Carella, A., Bukh, J. & Thomas, D. L. Genetic epidemiology of hepatitis C virus throughout Egypt. J. Infect. Dis. 182, 698-707 (2000).
-
(2000)
J. Infect. Dis.
, vol.182
, pp. 698-707
-
-
Ray, S.C.1
Arthur, R.R.2
Carella, A.3
Bukh, J.4
Thomas, D.L.5
-
34
-
-
28444494766
-
Fruit bats as reservoirs of Ebola virus
-
Leroy, E. M. et al. Fruit bats as reservoirs of Ebola virus. Nature 438, 575-576 (2005).
-
(2005)
Nature
, vol.438
, pp. 575-576
-
-
Leroy, E.M.1
-
35
-
-
84939231436
-
Assessing the evidence supporting fruit bats as the primary reservoirs for Ebola viruses
-
Leendertz, S. A., Gogarten, J. F., Düx, A., Calvignac-Spencer, S. & Leendertz, F. H. Assessing the evidence supporting fruit bats as the primary reservoirs for Ebola viruses. EcoHealth 13, 18-25 (2016).
-
(2016)
EcoHealth
, vol.13
, pp. 18-25
-
-
Leendertz, S.A.1
Gogarten, J.F.2
Düx, A.3
Calvignac-Spencer, S.4
Leendertz, F.H.5
-
36
-
-
77953665114
-
Filoviruses are ancient and integrated into mammalian genomes
-
Taylor, D. J., Leach, R. W. & Bruenn, J. Filoviruses are ancient and integrated into mammalian genomes. BMC Evol. Biol. 10, 193 (2010).
-
(2010)
BMC Evol. Biol.
, vol.10
, pp. 193
-
-
Taylor, D.J.1
Leach, R.W.2
Bruenn, J.3
-
37
-
-
84907710141
-
Evidence that ebolaviruses and cuevaviruses have been diverging from marburgviruses since the Miocene
-
Taylor, D. J., Ballinger, M. J., Zhan, J. J., Hanzly, L. E. & Bruenn, J. A. Evidence that ebolaviruses and cuevaviruses have been diverging from marburgviruses since the Miocene. PeerJ 2, e556 (2014).
-
(2014)
PeerJ
, vol.2
, pp. 556
-
-
Taylor, D.J.1
Ballinger, M.J.2
Zhan, J.J.3
Hanzly, L.E.4
Bruenn, J.A.5
-
38
-
-
0018104527
-
Ebola haemorrhagic fever in Zaire 1976
-
Report of an International Commission
-
Report of an International Commission. Ebola haemorrhagic fever in Zaire, 1976. Bull. World Health Organ. 56, 271-293 (1978).
-
(1978)
Bull. World Health Organ.
, vol.56
, pp. 271-293
-
-
-
39
-
-
84908072433
-
Ebola virus disease in West Africa-the first 9 months of the epidemic and forward projections
-
WHO Ebola Response Team
-
WHO Ebola Response Team. Ebola virus disease in West Africa-the first 9 months of the epidemic and forward projections. N. Engl. J. Med. 371, 1481-1495 (2014).
-
(2014)
N. Engl. J. Med.
, vol.371
, pp. 1481-1495
-
-
-
40
-
-
84912094781
-
Case fatality rate for Ebola virus disease in West Africa
-
Kucharski, A. J. & Edmunds, W. J. Case fatality rate for Ebola virus disease in West Africa. Lancet 384, 1260 (2014).
-
(2014)
Lancet
, vol.384
, pp. 1260
-
-
Kucharski, A.J.1
Edmunds, W.J.2
-
41
-
-
84991701772
-
Outbreaks chronology: Ebola virus disease
-
CDC
-
CDC. Outbreaks chronology: Ebola virus disease. Outbreaks http://www.cdc. gov/vhf/ebola/outbreaks/history/chronology.html (2015).
-
(2015)
Outbreaks
-
-
-
42
-
-
84942097404
-
Delayed disease progression in Cynomolgus macaques infected with Ebola virus Makona strain
-
Marzi, A. et al. Delayed disease progression in Cynomolgus macaques infected with Ebola virus Makona strain. Emerg. Infect. Dis. 21, 1777-1783 (2015).
-
(2015)
Emerg. Infect. Dis.
, vol.21
, pp. 1777-1783
-
-
Marzi, A.1
-
43
-
-
84912539213
-
Clinical illness and outcomes in patients with Ebola in Sierra Leone
-
Schieffelin, J. S. et al. Clinical illness and outcomes in patients with Ebola in Sierra Leone. N. Engl. J. Med. 371, 2092-2100 (2014).
-
(2014)
N. Engl. J. Med.
, vol.371
, pp. 2092-2100
-
-
Schieffelin, J.S.1
-
44
-
-
84926018433
-
Phylodynamic analysis of Ebola virus in the 2014 Sierra Leone epidemic
-
ecurrents.outbreaks.6f7025f1271821d4c81 5385b08f5f80e
-
Volz, E. & Pond, S. Phylodynamic analysis of Ebola virus in the 2014 Sierra Leone epidemic. PLoS Curr. 6, ecurrents.outbreaks.6f7025f1271821d4c81 5385b08f5f80e (2014).
-
(2014)
PLoS Curr
, vol.6
-
-
Volz, E.1
Pond, S.2
-
45
-
-
84921934974
-
Quantifying the epidemic spread of Ebola virus (EBOV) in Sierra Leone using phylodynamics
-
Alizon, S., Lion, S., Murall, C. L. & Abbate, J. L. Quantifying the epidemic spread of Ebola virus (EBOV) in Sierra Leone using phylodynamics. Virulence 5, 825-827 (2014).
-
(2014)
Virulence
, vol.5
, pp. 825-827
-
-
Alizon, S.1
Lion, S.2
Murall, C.L.3
Abbate, J.L.4
-
46
-
-
84922683812
-
Estimating the reproduction number of Ebola virus (EBOV) during the 2014 outbreak in West Africa
-
ecurrents. outbreaks.91afb5e0f279e7f29e7056095255b288
-
Althaus, C. L. Estimating the reproduction number of Ebola virus (EBOV) during the 2014 outbreak in West Africa. PLoS Curr. 6, ecurrents. outbreaks.91afb5e0f279e7f29e7056095255b288 (2014).
-
(2014)
PLoS Curr
, vol.6
-
-
Althaus, C.L.1
-
47
-
-
84949998818
-
Ebola virus disease in the democratic republic of the Congo 1976-2014
-
Rosello, A. et al. Ebola virus disease in the Democratic Republic of the Congo, 1976-2014. eLife 4, e09015 (2015).
-
(2015)
ELife
, vol.4
, pp. 09015
-
-
Rosello, A.1
-
48
-
-
84912539216
-
Phylogenetic analysis of Guinea 2014 EBOV ebolavirus outbreak
-
ecurrents.outbreaks.84eefe5ce43ec9dc0 bf0670f7b8b417d
-
Dudas, G. & Rambaut, A. Phylogenetic analysis of Guinea 2014 EBOV ebolavirus outbreak. PLoS Curr. 6, ecurrents.outbreaks.84eefe5ce43ec9dc0 bf0670f7b8b417d (2014).
-
(2014)
PLoS Curr
, vol.6
-
-
Dudas, G.1
Rambaut, A.2
-
49
-
-
9144230635
-
Multiple Ebola virus transmission events and rapid decline of central African wildlife
-
Leroy, E. M. et al. Multiple Ebola virus transmission events and rapid decline of central African wildlife. Science 303, 387-390 (2004).
-
(2004)
Science
, vol.303
, pp. 387-390
-
-
Leroy, E.M.1
-
50
-
-
36749025693
-
Isolates of Zaire ebolavirus from wild apes reveal genetic lineage and recombinants
-
Wittmann, T. J. et al. Isolates of Zaire ebolavirus from wild apes reveal genetic lineage and recombinants. Proc. Natl Acad. Sci. USA 104, 17123-17127 (2007).
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 17123-17127
-
-
Wittmann, T.J.1
-
51
-
-
27844473356
-
Wave-like spread of Ebola Zaire
-
Walsh, P. D., Biek, R. & Real, L. A. Wave-like spread of Ebola Zaire. PLoS Biol. 3, e371 (2005).
-
(2005)
PLoS Biol.
, vol.3
, pp. 371
-
-
Walsh, P.D.1
Biek, R.2
Real, L.A.3
-
52
-
-
84874743752
-
Molecular evolution of viruses of the family Filoviridae based on 97 whole-genome sequences
-
Carroll, S. A. et al. Molecular evolution of viruses of the family Filoviridae based on 97 whole-genome sequences. J. Virol. 87, 2608-2616 (2013).
-
(2013)
J. Virol.
, vol.87
, pp. 2608-2616
-
-
Carroll, S.A.1
-
53
-
-
33750466517
-
Recent common ancestry of Ebola Zaire virus found in a bat reservoir
-
Biek, R., Walsh, P. D., Leroy, E. M. & Real, L. A. Recent common ancestry of Ebola Zaire virus found in a bat reservoir. PLoS Pathog. 2, e90 (2006).
-
(2006)
PLoS Pathog.
, vol.2
, pp. 90
-
-
Biek, R.1
Walsh, P.D.2
Leroy, E.M.3
Real, L.A.4
-
54
-
-
33344465800
-
Relaxed phylogenetics and dating with confidence
-
Drummond, A. J., Ho, S. Y., Phillips, M. J. & Rambaut, A. Relaxed phylogenetics and dating with confidence. PLoS Biol. 4, e88 (2006).
-
(2006)
PLoS Biol.
, vol.4
, pp. 88
-
-
Drummond, A.J.1
Ho, S.Y.2
Phillips, M.J.3
Rambaut, A.4
-
55
-
-
0029976177
-
The virion glycoproteins of Ebola viruses are encoded in two reading frames and are expressed through transcriptional editing
-
Sanchez, A., Trappier, S. G., Mahy, B. W., Peters, C. J. & Nichol, S. T. The virion glycoproteins of Ebola viruses are encoded in two reading frames and are expressed through transcriptional editing. Proc. Natl Acad. Sci. USA 93, 3602-3607 (1996).
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 3602-3607
-
-
Sanchez, A.1
Trappier, S.G.2
Mahy, B.W.3
Peters, C.J.4
Nichol, S.T.5
-
56
-
-
0030625060
-
Isolation and phylogenetic characterization of Ebola viruses causing different outbreaks in Gabon
-
Georges-Courbot, M. C. et al. Isolation and phylogenetic characterization of Ebola viruses causing different outbreaks in Gabon. Emerg. Infect. Dis. 3, 59-62 (1997).
-
(1997)
Emerg. Infect. Dis.
, vol.3
, pp. 59-62
-
-
Georges-Courbot, M.C.1
-
57
-
-
0033066467
-
Ebola hemorrhagic fever outbreaks in Gabon 1994-1997: Epidemiologic and health control issues
-
Georges, A. J. et al. Ebola hemorrhagic fever outbreaks in Gabon, 1994-1997: epidemiologic and health control issues. J. Infect. Dis. 179 (Suppl. 1), S65-S75 (1999).
-
(1999)
J. Infect. Dis.
, vol.179
, pp. 565-575
-
-
Georges, A.J.1
-
58
-
-
0033030820
-
Persistence and genetic stability of Ebola virus during the outbreak in Kikwit
-
Rodriguez, L. L. et al. Persistence and genetic stability of Ebola virus during the outbreak in Kikwit, Democratic Republic of the Congo, 1995. J. Infect. Dis. 179 (Suppl. 1), S170-S176 (1999).
-
(1999)
Democratic Republic of the Congo 1995. J. Infect. Dis.
, vol.179
, pp. 5170-5176
-
-
Rodriguez, L.L.1
-
59
-
-
80054754287
-
Emergence of divergent Zaire ebola virus strains in Democratic Republic of the Congo in 2007 and 2008
-
Grard, G. et al. Emergence of divergent Zaire ebola virus strains in Democratic Republic of the Congo in 2007 and 2008. J. Infect. Dis. 204 (Suppl. 3), S776-S784 (2011).
-
(2011)
J. Infect. Dis.
, vol.204
, pp. 5776-5784
-
-
Grard, G.1
-
62
-
-
84929332445
-
Transmission of Ebola viruses: What we know and what we do not know
-
Osterholm, M. T. et al. Transmission of Ebola viruses: what we know and what we do not know. MBio 6, e00137 (2015).
-
(2015)
MBio
, vol.6
, pp. 00137
-
-
Osterholm, M.T.1
-
63
-
-
84991723340
-
Ebola through air or not through air: That is the question
-
Ponce De Leon-Rosales, S., Arredondo-Hernandez, R., Macias, A. & Wenzel, R. P. Ebola, through air or not through air: that is the question. Front. Public Health 2, 292 (2015).
-
(2015)
Front. Public Health
, vol.2
, pp. 292
-
-
Ponce De Leon-Rosales, S.1
Arredondo-Hernandez, R.2
MacIas, A.3
Wenzel, R.P.4
-
64
-
-
84912524573
-
Ebola in West Africa: The outbreak able to change many things
-
Leroy, E. M., Labouba, I., Maganga, G. D. & Berthet, N. Ebola in West Africa: the outbreak able to change many things. Clin. Microbiol. Infect. 20, O597-O599 (2014).
-
(2014)
Clin. Microbiol. Infect.
, vol.20
, pp. O597-O599
-
-
Leroy, E.M.1
Labouba, I.2
Maganga, G.D.3
Berthet, N.4
-
65
-
-
84991657641
-
What we're afraid to say about Ebola
-
11 Sept.
-
Osterholm, M. T. What we're afraid to say about Ebola. NY Times (11 Sept. 2014).
-
(2014)
NY Times
-
-
Osterholm, M.T.1
-
66
-
-
84946103895
-
Coverage of the Ebola virus disease epidemic in three widely circulated United States newspapers: Implications for preparedness and prevention
-
Basch, C. H., Basch, C. E. & Redlener, I. Coverage of the Ebola virus disease epidemic in three widely circulated United States newspapers: implications for preparedness and prevention. Health Promot. Perspect. 4, 247-251 (2014).
-
(2014)
Health Promot. Perspect.
, vol.4
, pp. 247-251
-
-
Basch, C.H.1
Basch, C.E.2
Redlener, I.3
-
67
-
-
84991614266
-
Ebola's fast evolution questioned
-
Callaway, E. M. Ebola's fast evolution questioned. NATNEWS doi:10.1038/nature.2015.17200 (2015).
-
(2015)
NATNEWS
-
-
Callaway, E.M.1
-
68
-
-
84927566113
-
A reassuring snapshot of Ebola
-
Vogel, G. A reassuring snapshot of Ebola. Science 347, 1407 (2015).
-
(2015)
Science
, vol.347
, pp. 1407
-
-
Vogel, G.1
-
69
-
-
84929304501
-
New advances in the effort against Ebola
-
Saphire, E. O. New advances in the effort against Ebola. Cell Host Microbe 17, 545-547 (2015).
-
(2015)
Cell Host Microbe
, vol.17
, pp. 545-547
-
-
Saphire, E.O.1
-
70
-
-
84937629431
-
How Ebola has been evolving in West Africa
-
Liu, S. Q., Rayner, S. & Zhang, B. How Ebola has been evolving in West Africa. Trends Microbiol. 23, 387-388 (2015).
-
(2015)
Trends Microbiol.
, vol.23
, pp. 387-388
-
-
Liu, S.Q.1
Rayner, S.2
Zhang, B.3
-
71
-
-
34548548784
-
Evidence for time dependency of molecular rate estimates
-
Ho, S. Y., Shapiro, B., Phillips, M. J., Cooper, A. & Drummond, A. J. Evidence for time dependency of molecular rate estimates. Syst. Biol. 56, 515-522 (2007).
-
(2007)
Syst. Biol.
, vol.56
, pp. 515-522
-
-
Ho, S.Y.1
Shapiro, B.2
Phillips, M.J.3
Cooper, A.4
Drummond, A.J.5
-
72
-
-
84902668596
-
Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates
-
Duchene, S., Holmes, E. C. & Ho, S. Y. Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates. Proc. R. Soc. 281, 20140732(2014).
-
(2014)
Proc. R. Soc.
, vol.281
, pp. 20140732
-
-
Duchene, S.1
Holmes, E.C.2
Ho, S.Y.3
-
73
-
-
2142753891
-
The population genetics and evolutionary epidemiology of RNA viruses
-
Moya, A., Holmes, E. C. & González-Candelas, F. The population genetics and evolutionary epidemiology of RNA viruses. Nat. Rev. Microbiol. 2, 279-288 (2004).
-
(2004)
Nat. Rev. Microbiol.
, vol.2
, pp. 279-288
-
-
Moya, A.1
Holmes, E.C.2
González-Candelas, F.3
-
74
-
-
84912539215
-
Ebola virus disease in the Democratic Republic of Congo
-
Maganga, G. D. et al. Ebola virus disease in the Democratic Republic of Congo. N. Engl. J. Med. 371, 2083-2091 (2014).
-
(2014)
N. Engl. J. Med.
, vol.371
, pp. 2083-2091
-
-
Maganga, G.D.1
-
75
-
-
84940973393
-
Puzzling origins of the Ebola outbreak in the Democratic Republic of the Congo 2014
-
Lam, T. T., Zhu, H., Chong, Y. L., Holmes, E. C. & Guan, Y. Puzzling origins of the Ebola outbreak in the Democratic Republic of the Congo, 2014. J. Virol. 89, 10130-10132 (2015).
-
(2015)
J. Virol.
, vol.89
, pp. 10130-10132
-
-
Lam, T.T.1
Zhu, H.2
Chong, Y.L.3
Holmes, E.C.4
Guan, Y.5
-
76
-
-
84978665173
-
Reduced evolutionary rate in reemerged Ebola virus transmission chains
-
Blackley, D. J. et al. Reduced evolutionary rate in reemerged Ebola virus transmission chains. Sci. Adv. 2, e1600378 (2016).
-
(2016)
Sci. Adv.
, vol.2
, pp. 1600378
-
-
Blackley, D.J.1
-
77
-
-
84949460157
-
Molecular evidence of sexual transmission of Ebola virus
-
Mate, S. E. et al. Molecular evidence of sexual transmission of Ebola virus. N. Engl. J. Med. 373, 2448-2454 (2015).
-
(2015)
N. Engl. J. Med.
, vol.373
, pp. 2448-2454
-
-
Mate, S.E.1
-
78
-
-
0036961512
-
The rate and character of spontaneous mutation in an RNA virus
-
Malpica, J. M. et al. The rate and character of spontaneous mutation in an RNA virus. Genetics 162, 1505-1511 (2002).
-
(2002)
Genetics
, vol.162
, pp. 1505-1511
-
-
Malpica, J.M.1
-
79
-
-
77956826336
-
Viral mutation rates
-
Sanjuán, R., Nebot, M. R., Chirico, N., Mansky, L. M. & Belshaw, R. Viral mutation rates. J. Virol. 84, 9733-9748 (2010).
-
(2010)
J. Virol.
, vol.84
, pp. 9733-9748
-
-
Sanjuán, R.1
Nebot, M.R.2
Chirico, N.3
Mansky, L.M.4
Belshaw, R.5
-
80
-
-
80955177492
-
Experimental evolution of RNA versus DNA viruses
-
Domingo-Calap, P. & Sanjuán, R. Experimental evolution of RNA versus DNA viruses. Evolution 65, 2987-2994 (2011).
-
(2011)
Evolution
, vol.65
, pp. 2987-2994
-
-
Domingo-Calap, P.1
Sanjuán, R.2
-
81
-
-
50649111431
-
A compendium of 40 years of epidemiological, clinical, laboratory studies
-
Kuhn, J. H. Filoviruses. A compendium of 40 years of epidemiological, clinical, laboratory studies. Arch. Virol. Suppl. 20, 13-360 (2008).
-
(2008)
Arch. Virol. Suppl.
, vol.20
, pp. 13-360
-
-
Kuhn, J.H.1
Filoviruses2
-
82
-
-
80052868218
-
Small molecule inhibitors reveal Niemann-Pick C1 is essential for Ebola virus infection
-
Côté, M. et al. Small molecule inhibitors reveal Niemann-Pick C1 is essential for Ebola virus infection. Nature 477, 344-348 (2011).
-
(2011)
Nature
, vol.477
, pp. 344-348
-
-
Côté, M.1
-
83
-
-
80052851832
-
Ebola virus entry requires the cholesterol transporter Niemann-Pick C1
-
Carette, J. E. et al. Ebola virus entry requires the cholesterol transporter Niemann-Pick C1. Nature 477, 340-343 (2011).
-
(2011)
Nature
, vol.477
, pp. 340-343
-
-
Carette, J.E.1
-
84
-
-
22944457912
-
Influenza: Lessons from past pandemics, warnings from current incidents
-
Horimoto, T. & Kawaoka, Y. Influenza: lessons from past pandemics, warnings from current incidents. Nat. Rev. Microbiol. 3, 591-600 (2005).
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 591-600
-
-
Horimoto, T.1
Kawaoka, Y.2
-
85
-
-
85031034733
-
Ebola RNA persistence in semen of Ebola virus disease survivors-preliminary report
-
Deen, G. F. et al. Ebola RNA persistence in semen of Ebola virus disease survivors-preliminary report. N. Engl. J. Med. (2015). 10.1056/NEJMoa1511410
-
(2015)
N. Engl. J. Med.
-
-
Deen, G.F.1
-
86
-
-
84931029211
-
Possible sexual transmission of Ebola virus-Liberia, 2015
-
Christie, A. et al. Possible sexual transmission of Ebola virus-Liberia, 2015. MMWR Morb. Mortal. Wkly. Rep. 64, 479-481 (2015).
-
(2015)
MMWR Morb. Mortal. Wkly. Rep.
, vol.64
, pp. 479-481
-
-
Christie, A.1
-
87
-
-
84955092798
-
Ebola virus persistence in semen ex vivo
-
Fischer, R. J., Judson, S., Miazgowicz, K., Bushmaker, T. & Munster, V. J. Ebola virus persistence in semen ex vivo. Emerg. Infect. Dis. 22, 289-291 (2016).
-
(2016)
Emerg. Infect. Dis.
, vol.22
, pp. 289-291
-
-
Fischer, R.J.1
Judson, S.2
Miazgowicz, K.3
Bushmaker, T.4
Munster, V.J.5
-
88
-
-
84959413363
-
Systematic review of the literature on viral persistence and sexual transmission from recovered Ebola survivors: Evidence and recommendations
-
Thorson, A., Formenty, P., Lofthouse, C. & Broutet, N. Systematic review of the literature on viral persistence and sexual transmission from recovered Ebola survivors: evidence and recommendations. BMJ Open 6, e008859 (2016).
-
(2016)
BMJ Open
, vol.6
, pp. 008859
-
-
Thorson, A.1
Formenty, P.2
Lofthouse, C.3
Broutet, N.4
-
89
-
-
70349675664
-
Bayesian phylogeography finds its roots
-
Lemey, P., Rambaut, A., Drummond, A. J. & Suchard, M. A. Bayesian phylogeography finds its roots. PLOS Comput. Biol. 5, e1000520 (2009).
-
(2009)
PLOS Comput. Biol.
, vol.5
, pp. 1000520
-
-
Lemey, P.1
Rambaut, A.2
Drummond, A.J.3
Suchard, M.A.4
-
90
-
-
84858420452
-
Estimating the basic reproductive number from viral sequence data
-
Stadler, T. et al. Estimating the basic reproductive number from viral sequence data. Mol. Biol. Evol. 29, 347-357 (2012).
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 347-357
-
-
Stadler, T.1
-
91
-
-
84926018434
-
Insights into the early epidemic spread of Ebola in Sierra Leone provided by viral sequence data
-
ecurrents.outbreaks.02bc6d927ecee7bbd33532ec8ba6a25f
-
Stadler, T., Kühnert, D., Rasmussen, D. A. & du Plessis, L. Insights into the early epidemic spread of Ebola in Sierra Leone provided by viral sequence data. PLoS Curr. 6, ecurrents.outbreaks.02bc6d927ecee7bbd33532ec8ba6a25f (2014).
-
(2014)
PLoS Curr.
, pp. 6
-
-
Stadler, T.1
Kühnert, D.2
Rasmussen, D.A.3
Du Plessis, L.4
-
92
-
-
84880494351
-
Uncovering epidemiological dynamics in heterogeneous host populations using phylogenetic methods
-
Stadler, T. & Bonhoeffer, S. Uncovering epidemiological dynamics in heterogeneous host populations using phylogenetic methods. Phil. Trans. R. Soc. Lond. B 368, 20120198 (2013).
-
(2013)
Phil. Trans. R. Soc. Lond. B
, vol.368
, pp. 20120198
-
-
Stadler, T.1
Bonhoeffer, S.2
-
93
-
-
84955114356
-
Nanopore sequencing as a rapidly deployable Ebola outbreak tool
-
Hoenen, T. et al. Nanopore sequencing as a rapidly deployable Ebola outbreak tool. Emerg. Infect. Dis. 22, 331-334 (2016).
-
(2016)
Emerg. Infect. Dis.
, vol.22
, pp. 331-334
-
-
Hoenen, T.1
-
94
-
-
84976542434
-
Roots, not parachutes: Research collaborations combat outbreaks
-
Yozwiak, N. L. et al. Roots, not parachutes: research collaborations combat outbreaks. Cell 166, 5-8 (2016).
-
(2016)
Cell
, vol.166
, pp. 5-8
-
-
Yozwiak, N.L.1
-
95
-
-
84956621342
-
Quantifying influenza virus diversity and transmission in humans
-
Poon, L. L. et al. Quantifying influenza virus diversity and transmission in humans. Nat. Genet. 48, 195-200 (2016).
-
(2016)
Nat. Genet.
, vol.48
, pp. 195-200
-
-
Poon, L.L.1
-
96
-
-
84869753388
-
Inferring the inter-host transmission of influenza A virus using patterns of intra-host genetic variation
-
Stack, J. C., Murcia, P. R., Grenfell, B. T., Wood, J. L. & Holmes, E. C. Inferring the inter-host transmission of influenza A virus using patterns of intra-host genetic variation. Proc. R. Soc. 280, 20122173 (2013).
-
(2013)
Proc. R. Soc.
, vol.280
, pp. 20122173
-
-
Stack, J.C.1
Murcia, P.R.2
Grenfell, B.T.3
Wood, J.L.4
Holmes, E.C.5
-
97
-
-
84864530626
-
Bayesian phylogenetics with BEAUti and the BEAST 1.7
-
Drummond, A. J., Suchard, M. A., Xie, D. & Rambaut, A. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol. Biol. Evol. 29, 1969-1973 (2012).
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 1969-1973
-
-
Drummond, A.J.1
Suchard, M.A.2
Xie, D.3
Rambaut, A.4
-
98
-
-
84930200436
-
Erratum: Mutation rate and genotype variation of Ebola virus from Mali case sequences
-
Hoenen, T. et al. Erratum: Mutation rate and genotype variation of Ebola virus from Mali case sequences. Science 348, aac5674 (2015).
-
(2015)
Science
, vol.348
, pp. 5674
-
-
Hoenen, T.1
-
99
-
-
14644397888
-
RAxML-III: A fast program for maximum likelihood-based inference of large phylogenetic trees
-
Stamatakis, A., Ludwig, T. & Meier, H. RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 21, 456-463 (2005).
-
(2005)
Bioinformatics
, vol.21
, pp. 456-463
-
-
Stamatakis, A.1
Ludwig, T.2
Meier, H.3
-
100
-
-
0242578620
-
A simple, fast, accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon, S. & Gascuel, O. A simple, fast, accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696-704 (2003).
-
(2003)
Syst. Biol.
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
|