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Volumn 2, Issue 1, 2016, Pages

Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases

(62)  Arias, Armando a   Watson, Simon J b   Asogun, Danny c,d   Tobin, Ekaete Alice c,d   Lu, Jia a   Phan, My V T b   Jah, Umaru e   Wadoum, Raoul Emeric Guetiya e   Meredith, Luke a   Thorne, Lucy a   Caddy, Sarah a   Tarawalie, Alimamy e   Langat, Pinky b   Dudas, Gytis f   Faria, Nuno R g   Dellicour, Simon g   Kamara, Abdul h   Kargbo, Brima h   Kamara, Brima Osaio h   Gevao, Sahr h   more..


Author keywords

Ebola virus; evolution; outbreak sequencing.; transmission

Indexed keywords


EID: 85084326675     PISSN: None     EISSN: 20571577     Source Type: Journal    
DOI: 10.1093/ve/vew016     Document Type: Article
Times cited : (105)

References (36)
  • 1
    • 84860771820 scopus 로고    scopus 로고
    • Spades: A new genome assembly algorithm and its applications to single-cell sequencing
    • Bankevich, A., et al. (2012) 'SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing', Journal of Computational Biology, 19/5: 455-77
    • (2012) Journal of Computational Biology , vol.5 , Issue.19 , pp. 455-477
    • Bankevich, A.1
  • 2
    • 84978665173 scopus 로고    scopus 로고
    • Reduced evolutionary rate in reemerged ebola virus transmission chains
    • Blackley, D. J., et al. (2016) 'Reduced Evolutionary Rate in Reemerged Ebola Virus Transmission Chains', Science Advances, 2/4: E1600378. DOI: 10.1126/sciadv.1600378.
    • (2016) Science Advances , vol.2 , Issue.4 , pp. e1600378
    • Blackley, D.J.1
  • 3
    • 84931029211 scopus 로고    scopus 로고
    • Possible sexual transmission of ebola virus - Liberia, 2015
    • Christie, A., et al. (2015) 'Possible Sexual Transmission of Ebola Virus - Liberia, 2015', MMWR Morbidity and Mortality Weekly Report, 64/17: 479-81
    • (2015) MMWR Morbidity and Mortality Weekly Report , vol.17 , Issue.64 , pp. 479-481
    • Christie, A.1
  • 4
    • 85031034733 scopus 로고    scopus 로고
    • Ebola RNA persistence in semen of ebola virus disease survivors - Preliminary report
    • Deen, G. F., et al. (2015) 'Ebola RNA Persistence in Semen of Ebola Virus Disease Survivors - Preliminary Report', New England Journal of Medicine. DOI: 10.1056/NEJMoa1511410.
    • (2015) New England Journal of Medicine
    • Deen, G.F.1
  • 5
    • 33344465800 scopus 로고    scopus 로고
    • Relaxed phylogenetics and dating with confidence
    • Drummond, A. J., et al. (2006) 'Relaxed Phylogenetics and Dating with Confidence', PLoS Biology, 4/5: E88
    • (2006) PLoS Biology , vol.4 , Issue.5 , pp. e88
    • Drummond, A.J.1
  • 6
    • 84864530626 scopus 로고    scopus 로고
    • Bayesian phylogenetics with BEAUti and the BEAST 1.7
    • (2012) 'Bayesian Phylogenetics with BEAUti and the BEAST 1.7', Molecular Biology and Evolution, 29/8: 1969-73
    • (2012) Molecular Biology and Evolution , vol.8 , Issue.29 , pp. 1969-1973
  • 7
    • 84964355149 scopus 로고    scopus 로고
    • Transmission dynamics of ebola virus disease and intervention effectiveness in Sierra Leone
    • Fang, L. Q., et al. (2016) 'Transmission Dynamics of Ebola Virus Disease and Intervention Effectiveness in Sierra Leone', Proceedings of the National Academy of Sciences of the United States of America, 113/16: 4488-93
    • (2016) Proceedings of the National Academy of Sciences of the United States of America , vol.16 , Issue.113 , pp. 4488-4493
    • Fang, L.Q.1
  • 8
    • 84937955824 scopus 로고    scopus 로고
    • Real-time digital pathogen surveillance - The time is now
    • Gardy, J., Loman, N. J., and Rambaut, A. (2015) 'Real-Time Digital Pathogen Surveillance - The Time is Now', Genome Biology, 16: 155
    • (2015) Genome Biology , vol.16 , pp. 155
    • Gardy, J.1    Loman, N.J.2    Rambaut, A.3
  • 9
    • 84873576867 scopus 로고    scopus 로고
    • Improving Bayesian population dynamics inference: A coalescent-based model for multiple loci
    • Gill, M. S., et al. (2013) 'Improving Bayesian Population Dynamics Inference: A Coalescent-Based Model for Multiple Loci', Molecular Biology and Evolution, 30/3: 713-24
    • (2013) Molecular Biology and Evolution , vol.3 , Issue.30 , pp. 713-724
    • Gill, M.S.1
  • 10
    • 84907193791 scopus 로고    scopus 로고
    • Genomic surveillance elucidates ebola virus origin and transmission during the 2014 outbreak
    • Gire, S. K., et al. (2014) 'Genomic Surveillance Elucidates Ebola Virus Origin and Transmission During the 2014 Outbreak', Science, 345/6202: 1369-72
    • (2014) Science , vol.345 , Issue.6202 , pp. 1369-1372
    • Gire, S.K.1
  • 13
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa, M., Kishino, H., and Yano, T. (1985) 'Dating of the Human-Ape Splitting by a Molecular Clock of Mitochondrial DNA', Journal of Molecular Evolution, 22/2: 160-74
    • (1985) Journal of Molecular Evolution , vol.2 , Issue.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 15
    • 84911429068 scopus 로고    scopus 로고
    • Aliview: A fast and lightweight alignment viewer and editor for large datasets
    • Larsson, A. (2014) 'AliView: A Fast and Lightweight Alignment Viewer and Editor for Large Datasets', Bioinformatics, 30/22: 3276-8
    • (2014) Bioinformatics , vol.22 , Issue.30 , pp. 3276-3278
    • Larsson, A.1
  • 16
    • 84951139771 scopus 로고    scopus 로고
    • Evolution and spread of ebola virus in Liberia, 2014-2015
    • Ladner, J. T., et al. (2015) 'Evolution and Spread of Ebola Virus in Liberia, 2014-2015', Cell Host Microbe, 18/6: 659-69
    • (2015) Cell Host Microbe , vol.6 , Issue.18 , pp. 659-669
    • Ladner, J.T.1
  • 17
    • 84949460157 scopus 로고    scopus 로고
    • Molecular evidence of sexual transmission of ebolavirus
    • Mate, S. E., et al. (2015) 'Molecular Evidence of Sexual Transmission of EbolaVirus', New England Journal of Medicine, 373: 2448-2454
    • (2015) New England Journal of Medicine , vol.373 , pp. 2448-2454
    • Mate, S.E.1
  • 18
    • 84922041976 scopus 로고    scopus 로고
    • Lactating mothers infected with ebola virus: Ebov rt-PCR of blood only may be insufficient
    • pii=21017
    • Moreau, M., et al. (2015) 'Lactating Mothers Infected with Ebola Virus: EBOV RT-PCR of Blood Only May be Insufficient', Euro Surveillance, 20/3:pii=21017. DOI: Http://dx.doi.org/10.2807/ 1560-7917.ES2015.20.3.21017
    • (2015) Euro Surveillance , vol.3 , Issue.20
    • Moreau, M.1
  • 19
    • 85084326747 scopus 로고    scopus 로고
    • NCBI Ebolavirus Resource. (2016) http://www.ncbi.nlm.nih.gov/ genome/viruses/variation/ebola
    • (2016) NCBI Ebolavirus Resource
  • 20
    • 84961205877 scopus 로고    scopus 로고
    • Ebola virus in breast milk in an ebola virus-positive mother with twin babies, Guinea, 2015
    • Nordenstedt, H., et al. (2016) 'Ebola Virus in Breast Milk in an Ebola Virus-Positive Mother with Twin Babies, Guinea, 2015', Emerging Infectious Diseases, 22/4: 759-60
    • (2016) Emerging Infectious Diseases , vol.4 , Issue.22 , pp. 759-760
    • Nordenstedt, H.1
  • 22
    • 84949221834 scopus 로고    scopus 로고
    • The role of rapid diagnostics in managing ebola epidemics
    • Nouvellet, P., et al. (2015) 'The Role of Rapid Diagnostics in Managing Ebola Epidemics', Nature, 528/7580: S109-16
    • (2015) Nature , vol.528 , Issue.7580 , pp. S109-S116
    • Nouvellet, P.1
  • 23
    • 84934981152 scopus 로고    scopus 로고
    • Ebola virus epidemiology, transmission, and evolution during seven months in Sierra Leone
    • Park, D. J., et al. (2015) 'Ebola Virus Epidemiology, Transmission, and Evolution During Seven Months in Sierra Leone', Cell, 161/ 7: 1516-26
    • (2015) Cell , vol.7 , Issue.16 , pp. 1516-1526
    • Park, D.J.1
  • 24
    • 28944450584 scopus 로고    scopus 로고
    • Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences
    • Shapiro, B., Rambaut, A., and Drummond, A. J. (2006) 'Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences', Molecular Biology and Evolution, 23/1: 7-9
    • (2006) Molecular Biology and Evolution , vol.1 , Issue.23 , pp. 7-9
    • Shapiro, B.1    Rambaut, A.2    Drummond, A.J.3
  • 25
    • 84937234768 scopus 로고    scopus 로고
    • Distinct lineages of ebola virus in Guinea during the 2014 West African epidemic
    • Simon-Loriere, E., et al. (2015) 'Distinct Lineages of Ebola Virus in Guinea During the 2014 West African Epidemic', Nature, 524/ 763: 102-4
    • (2015) Nature , vol.524 , Issue.763 , pp. 102-104
    • Simon-Loriere, E.1
  • 26
    • 84899553363 scopus 로고    scopus 로고
    • RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies
    • Stamatakis, A. (2014) 'RAxML Version 8: A Tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies', Bioinformatics, 30/9: 1312-3
    • (2014) Bioinformatics , vol.9 , Issue.30 , pp. 1312-1313
    • Stamatakis, A.1
  • 27
    • 77954202497 scopus 로고    scopus 로고
    • Dendropy: A python library for phylogenetic computing
    • Sukumaran, J. and Holder, M. T. (2010) 'DendroPy: A Python Library for Phylogenetic Computing', Bioinformatics, 26/12: 1569-71
    • (2010) Bioinformatics , vol.12 , Issue.26 , pp. 1569-1571
    • Sukumaran, J.1    Holder, M.T.2
  • 28
    • 84971297229 scopus 로고    scopus 로고
    • New evidence of long-lasting persistence of ebola virus genetic material in semen of survivors
    • Sow, M. S., et al. (2016) 'New Evidence of Long-Lasting Persistence of Ebola Virus Genetic Material in Semen of Survivors'. Journal of Infectious Diseases. DOI: 10.1093/infdis/jiw078.
    • (2016) Journal of Infectious Diseases
    • Sow, M.S.1
  • 30
    • 84930394639 scopus 로고    scopus 로고
    • Genetic diversity and evolutionary dynamics of ebola virus in Sierra Leone
    • Tong, Y. G., et al. (2015) 'Genetic Diversity and Evolutionary Dynamics of Ebola Virus in Sierra Leone', Nature, 524/7563: 93-6
    • (2015) Nature , vol.524 , Issue.7563 , pp. 93-96
    • Tong, Y.G.1
  • 31
    • 77952716931 scopus 로고    scopus 로고
    • Comprehensive panel of real-time taqman polymerase chain reaction assays for detection and absolute quantification of filoviruses, arenaviruses, and new world hantaviruses
    • Trombley, A. R., et al. (2010) 'Comprehensive Panel of Real-Time TaqMan Polymerase Chain Reaction Assays for Detection and Absolute Quantification of filoviruses, Arenaviruses, and New World Hantaviruses', The American Journal of Tropical Medicine and Hygiene, 82/5: 954-60
    • (2010) The American Journal of Tropical Medicine and Hygiene , vol.5 , Issue.82 , pp. 954-960
    • Trombley, A.R.1
  • 32
    • 84873456999 scopus 로고    scopus 로고
    • Viral population analysis and minority-variant detection using short read next-generation sequencing
    • Watson, S. J., et al. (2013) 'Viral Population Analysis and Minority-Variant Detection Using Short Read Next-Generation Sequencing', Philosophical Transactions of the Royal Society B: Biological Sciences, 368/1614: 20120205
    • (2013) Philosophical Transactions of the Royal Society B: Biological Sciences , vol.368 , Issue.1614 , pp. 20120205
    • Watson, S.J.1
  • 33
    • 84924806083 scopus 로고    scopus 로고
    • WHO, February
    • WHO. Ebola Situation Report - 17 February 2016. http://apps. who.int/ebola/ebola-situation-reports
    • (2016) Ebola Situation Report - 17
  • 34
    • 85084326741 scopus 로고    scopus 로고
    • New Ebola case in Sierra Leone.
    • New Ebola case in Sierra Leone. (2016) WHO continues to stress risk of more flare-ups. http://www.who.int/media centre/news/statements/2016/new-ebola-case/en
    • (2016) WHO Continues to Stress Risk of More Flare-ups


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.